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1.
ACS Nano ; 18(26): 16325-16342, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38888229

ABSTRACT

The realm of biomedical materials continues to evolve rapidly, driven by innovative research across interdisciplinary domains. Leveraging big data from the CAS Content Collection, this study employs quantitative analysis through natural language processing (NLP) to identify six emerging areas within nanoscale materials for biomedical applications. These areas encompass self-healing, bioelectronic, programmable, lipid-based, protein-based, and antibacterial materials. Our Nano Focus delves into the multifaceted utilization of nanoscale materials in these domains, spanning from augmenting physical and electronic properties for interfacing with human tissue to facilitating intricate functionalities like programmable drug delivery.


Subject(s)
Biocompatible Materials , Humans , Biocompatible Materials/chemistry , Drug Delivery Systems , Nanostructures/chemistry , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Nanotechnology/methods , Natural Language Processing , Lipids/chemistry , Proteins/chemistry
2.
Heliyon ; 7(6): e07295, 2021 Jun.
Article in English | MEDLINE | ID: mdl-34179539

ABSTRACT

Bioethanol has been considered as a more sustainable alternative for fossil fuels, and it has been used as a drop-in fuel mixture. In this paper, the autoxidation properties of real kerosene as well as single, binary and ternary surrogates with the presence of ethanol are investigated for the first time. A simplified python code is proposed to predict the pressure drop of the PetroOXY method that was used for assessing the fuel autoxidation properties. The experimental results show that the addition of an ethanol concentration reduces the induction period of real kerosene while increasing that of surrogate mixtures. Also, the maximum pressure during the PetroOXY test increases with the increase of ethanol concentration. The model is able to predict the induction period of ethanol accurately by employing an automated reaction mechanism generator. A strategy to increase the autoxidation stability of ethanol by adding 1 g/L antioxidant has been evaluated. The efficiency of the antioxidants for ethanol is in the following order: PY > Decalin > DTBP > Tetralin > BHT > MTBP > BHA > TBHQ > PG.

3.
Cell Rep ; 33(12): 108527, 2020 12 22.
Article in English | MEDLINE | ID: mdl-33357439

ABSTRACT

Many bacteria contain an RNA repair operon, encoding the RtcB RNA ligase and the RtcA RNA cyclase, that is regulated by the RtcR transcriptional activator. Although RtcR contains a divergent version of the CARF (CRISPR-associated Rossman fold) oligonucleotide-binding regulatory domain, both the specific signal that regulates operon expression and the substrates of the encoded enzymes are unknown. We report that tRNA fragments activate operon expression. Using a genetic screen in Salmonella enterica serovar Typhimurium, we find that the operon is expressed in the presence of mutations that cause tRNA fragments to accumulate. RtcA, which converts RNA phosphate ends to 2', 3'-cyclic phosphate, is also required. Operon expression and tRNA fragment accumulation also occur upon DNA damage. The CARF domain binds 5' tRNA fragments ending in cyclic phosphate, and RtcR oligomerizes upon binding these ligands, a prerequisite for operon activation. Our studies reveal a signaling pathway involving broken tRNAs and implicate the operon in tRNA repair.


Subject(s)
Operon/immunology , RNA, Transfer/metabolism , RNA/metabolism , Humans
4.
Inorg Chem ; 56(13): 7566-7573, 2017 Jul 03.
Article in English | MEDLINE | ID: mdl-28613068

ABSTRACT

The estimation of the thermochemical radius is very important because most of the properties of the electrolyte solutions are, to some extent, linked to this property. Also, these thermochemical radii can be used to estimate lattice energies, which can be a very important parameter to be evaluated when assessing the possibility of synthesizing new inorganic materials. This study presents a formulation for estimating the thermochemical radii of complex ions. More specifically, these thermochemical radii are estimated using a weighted sum based on the radii of the contributing cations and anions. Also, the influence of the ionic charge on these thermochemical radii is assessed and discussed. Finally, the parameters obtained from the estimation of the thermochemical radii of complex cations are used to estimate cation volumes, and this estimation is then validated through comparison with literature values. As a result, the equations developed for thermochemical radii of complex ions produce predictions that are accurate to within 15% in general, whereas the equation developed to estimate cation volumes produces predictions that are accurate to within 20% considering cation volumes greater than 70 Å3.

5.
J Am Chem Soc ; 133(9): 3131-8, 2011 Mar 09.
Article in English | MEDLINE | ID: mdl-21306161

ABSTRACT

The assembly of colloidal nanocrystals (NCs) into superstructures with long-range translational and orientational order is sensitive to the molecular interactions between ligands bound to the NC surface. We illustrate how ligand coverage on colloidal PbS NCs can be exploited as a tunable parameter to direct the self-assembly of superlattices with predefined symmetry. We show that PbS NCs with dense ligand coverage assemble into face-centered cubic (fcc) superlattices whereas NCs with sparse ligand coverage assemble into body-centered cubic (bcc) superlattices which also exhibit orientational ordering of NCs in their lattice sites. Surface chemistry characterization combined with density functional theory calculations suggest that the loss of ligands occurs preferentially on {100} than on reconstructed {111} NC facets. The resulting anisotropic ligand distribution amplifies the role of NC shape in the assembly and leads to the formation of superlattices with translational and orientational order.


Subject(s)
Lead/chemistry , Nanoparticles/chemistry , Nanoparticles/ultrastructure , Sulfides/chemistry , Anisotropy , Colloids/chemistry , Ligands , Surface Properties
6.
Langmuir ; 24(16): 8610-9, 2008 Aug 19.
Article in English | MEDLINE | ID: mdl-18636717

ABSTRACT

We have investigated the growth of hyperbranched polyglycidol films, and their subsequent reaction with a transition metal coordination complex, pentakis(dimethylamido)tantalum, Ta[N(CH 3) 2] 5 using ellipsometry, contact angle measurements, atomic force microscopy and X-ray photoelectron spectroscopy (XPS). Up to thicknesses of approximately 150 A, the growth of polyglycidol is approximately linear with reaction time for growth activated using either sodium methoxide or an organic superbase. The reaction of Ta[N(CH 3) 2] 5 at room temperature with these layers depends strongly on their thickness--the amount of uptake of Ta by the surface increases with the thickness of the organic layer, and thicker films also lead to more extensive ligand exchange reactions (with the R-OH groups), with as many as 4 ligands being lost on the thicker organic films. Ta penetrates the surface of all films examined (thicknesses 30-84 A), but the average depth of the penetration is nearly independent of the thickness of the organic film, and it is approximately 15-25 A. Modification of the polyglycidol with an aminoalkoxysilane introduces a significant fraction of -NH 2 termination in the organic layer. Reactions of this layer with the Ta complex are quite different than those on an unmodified layer--now on average only a single ligand exchange reaction occurs, while on the unmodified surface as many as four ligands are exchanged.

7.
J Phys Chem A ; 111(29): 6679-92, 2007 Jul 26.
Article in English | MEDLINE | ID: mdl-17536788

ABSTRACT

The kinetics and H atom channel yield at both 298 and 195 K have been determined for reactions of CN radicals with C2H2 (1.00+/-0.21, 0.97+/-0.20), C2H4 (0.96+/-0.032, 1.04+/-0.042), C3H6 (pressure dependent), iso-C4H8 (pressure dependent), and trans-2-C4H8 (0.039+/-0.019, 0.029+/-0.047) where the first figure in each bracket is the H atom yield at 298 K and the second is that at 195 K. The kinetics of all reactions were studied by monitoring both CN decay and H atom growth by laser-induced fluorescence at 357.7 and 121.6 nm, respectively. The results are in good agreement with previous studies where available. The rate coefficients for the reaction of CN with trans-2-butene and iso-butene have been measured at 298 and 195 K for the first time, and the rate coefficients are as follows: k298K=(2.93+/-0.23)x10(-10) cm3 molecule(-1) s(-1), k195K=(3.58+/-0.43)x10(-10) cm3 molecule(-1) s(-1) and k298K=(3.17+/-0.10)x10(-10) cm3 molecule(-1) s(-1), k195K=(4.32+/-0.35)x10(-10) cm3 molecule(-1) s(-1), respectively, where the errors represent a combination of statistical uncertainty (2sigma) and an estimate of possible systematic errors. A potential energy surface for the CN+C3H6 reaction has been constructed using G3X//UB3LYP electronic structure calculations identifying a number of reaction channels leading to either H, CH3, or HCN elimination following the formation of initial addition complexes. Results from the potential energy surface calculations have been used to run master equation calculations with the ratio of primary:secondary addition, the average amount of downward energy transferred in a collision DeltaEd, and the difference in barrier heights between H atom elimination and an H atom 1, 2 migration as variable parameters. Excellent agreement is obtained with the experimental 298 K H atom yields with the following parameter values: secondary addition complex formation equal to 80%, DeltaEd=145 cm(-1), and the barrier height for H atom elimination set 5 kJ mol(-1) lower than the barrier for migration. Finally, very low temperature master equation simulations using the best fit parameters have been carried out in an increased precision environment utilizing quad-double and double-double arithmetic to predict H and CH3 yields for the CN+C3H6 reaction at temperatures and pressures relevant to Titan. The H and CH3 yields predicted by the master equation have been parametrized in a simple equation for use in modeling.

8.
Phys Chem Chem Phys ; 8(27): 3197-210, 2006 Jul 21.
Article in English | MEDLINE | ID: mdl-16902712

ABSTRACT

The purpose of this paper is to show the application of global uncertainty analysis to comprehensive and reduced kinetic models as a tool to identify important thermochemical and reaction rate parameters as determinants of the conditions leading to autoignition. Propane oxidation is taken as the test case. The simulation of experimental investigations of the cool flames and two-stage ignitions, via the pressure-temperature ignition diagram, show that existing kinetic models for the low temperature combustion of propane at sub-atmospheric pressures reflect a greater reactivity than seems to be appropriate. That is, the models lead to a prediction of two-stage ignition at pressures somewhat lower and with ignition delays shorter than is found experimentally. The inconsistency between experiment and numerical simulation seems not to be an inherent problem of the qualitative structure of the models, but may derive from uncertainties in the parameters within the mechanism. By use of "brute force", Morris-one-at-a-time and Monte-Carlo simulations, we show that uncertainties in only a small number of parameters, and falling well within the errors that may reasonably be assigned, can shift the response appropriately. Moreover, it appears that in the low temperature combustion regime, thermochemistry is at least as, if not more, important than the reaction rates, yet usually receives less attention within sensitivity studies. In the present case, the main factors controlling the temperature reached in the first stage of two-stage ignition and the time to ignition appear to be connected with the thermochemistry of three specific hydroperoxyalkyl radicals and their derivatives. Other factors, such as heat and mass transport are also addressed, and their effects are mitigated to some extent by evaluation of initial and revised models against experimental data for ignition delay obtained under microgravity. The results highlight more general issues that pertain to the numerical simulation of the combustion of higher hydrocarbons and contribute to the development of the protocol necessary for testing kinetic models before they are ready for use in a predictive capacity.


Subject(s)
Alkanes/chemistry , Computer Simulation , Monte Carlo Method , Atmospheric Pressure , Cold Temperature , Free Radicals/chemistry , Hydroxides/chemistry , Kinetics , Models, Chemical
9.
J Phys Chem A ; 110(9): 2996-3009, 2006 Mar 09.
Article in English | MEDLINE | ID: mdl-16509621

ABSTRACT

The temperature and pressure dependence of the rate coefficient for the reaction H + SO2 has been measured using a laser flash photolysis/laser-induced fluorescence technique, for 295 10(3) atm, the latter proceeds directly from H + SO2, via the energized states of HOSO. The derived rate coefficients rely heavily on measurements of the reverse reaction, OH + SO, which has only been determined at temperatures up to 700 K.

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