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1.
Soft Matter ; 20(11): 2496-2508, 2024 Mar 13.
Article in English | MEDLINE | ID: mdl-38385969

ABSTRACT

We report a numerical investigation of the magnetophoresis of solutions containing paramagnetic metal ions. Using a simulated magnetic field of a superconducting magnet and the convection-diffusion model, we study the transport of transition metal salts through a porous medium domain. In particular, through a detailed comparison of the numerical results of magnetophoretic velocity and ion concentration profiles with prior published experiments, we validate the model. Subsequent to model validation, we perform a systematic analysis of the model parameters on the magnetophoresis of metal ions. Magnetophoresis is quantified with a magnetic Péclet number Pem. Under a non-uniform magnetic field, Pem initially rises, exhibiting a local maximum, and subsequently declines towards a quasi-steady value. Our results show that both the initial and maximum Pem values increase with increasing magnetic susceptibility, initial concentration of metal solutes, and ion cluster size. Conversely, Pem decreases as the porosity of the medium increases. Finally, the adsorption of metal salts onto the porous media surface is modeled through a dimensionless Damkohler number Daad. Our results suggest that the adsorption significantly slows the magnetophoresis and self-diffusion of the paramagnetic metal salts, with a net magnetophoresis velocity dependent on the kinetics and equilibrium adsorption properties of the metal salts. The latter result underscores the crucial role of adsorption in future magnetophoresis research.

2.
Science ; 376(6593): eabo2029, 2022 05 06.
Article in English | MEDLINE | ID: mdl-35536896

ABSTRACT

Walter et al. issue a number of critical comments on our report about the discovery of davemaoite to the end that they believe to show that our results do not provide compelling evidence for the presence of davemaoite in the type specimen and that the hosting diamond had formed in the lithosphere. Their claim is based on a misinterpretation of the diffraction data contained in the paper, an insufficient analysis of the compositional data that disregards the three-dimensional distribution of inclusions, and the arbitrary assumption that Earth's mantle shows no lateral variations in temperature, inconsistent with state-of-the-art assessments of mantle temperature variations and with their own published results.

3.
Science ; 374(6569): 891-894, 2021 Nov 12.
Article in English | MEDLINE | ID: mdl-34762475

ABSTRACT

Calcium silicate perovskite, CaSiO3, is arguably the most geochemically important phase in the lower mantle, because it concentrates elements that are incompatible in the upper mantle, including the heat-generating elements thorium and uranium, which have half-lives longer than the geologic history of Earth. We report CaSiO3-perovskite as an approved mineral (IMA2020-012a) with the name davemaoite. The natural specimen of davemaoite proves the existence of compositional heterogeneity within the lower mantle. Our observations indicate that davemaoite also hosts potassium in addition to uranium and thorium in its structure. Hence, the regional and global abundances of davemaoite influence the heat budget of the deep mantle, where the mineral is thermodynamically stable.

4.
Science ; 371(6525): 164-167, 2021 01 08.
Article in English | MEDLINE | ID: mdl-33414218

ABSTRACT

Carbonaceous chondritic meteorites are primordial Solar System materials and a source of water delivery to Earth. Fluid flow on the parent bodies of these meteorites is known to have occurred very early in Solar System history (first <4 million years). We analyze short-lived uranium isotopes in carbonaceous chondrites, finding excesses of 234-uranium over 238-uranium and 238-uranium over 230-thorium. These indicate that the fluid-mobile uranium ion U6+ moved within the past few 100,000 years. In some meteorites, this time scale is less than the cosmic-ray exposure age, which measures when they were ejected from their parent body into space. Fluid flow occurred after melting of ice, potentially by impact heating, solar heating, or atmospheric ablation. We favor the impact heating hypothesis, which implies that the parent bodies still contain ice.

5.
Sci Adv ; 6(26): eaba2923, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32637603

ABSTRACT

Mid-oceanic ridge basalts (MORBs) are depleted in incompatible elements, but ridge segments far from mantle plumes frequently erupt chemically enriched MORBs (E-MORBs). Two major explanations of E-MORBs are that these basalts are generated by the melting of entrained recycled crust (pyroxenite) beneath ridges or by the melting of refertilized peridotites. These two hypotheses can be discriminated with compatible element abundances from Sc to Ge, here termed the ScGe elements. Here, we demonstrate that E-MORBs have systematically lower Ge/Si and Sc contents and slightly higher Fe/Mn and Nb/Ta ratios than depleted MORBs (D-MORBs) due to the mixing of low-degree pyroxenite melts. The Ge/Si ratio is a new tracer that effectively discriminates between melts derived from peridotite sources and melts derived from mixed pyroxenite-peridotite sources. These new data are used to estimate the distribution of pyroxenite in the mantle sources of global MORB segments.

6.
Science ; 339(6121): 771-2, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23413347
7.
J Bacteriol ; 188(24): 8421-9, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17041042

ABSTRACT

The pathogenesis of human infections caused by the gram-positive microbe Staphylococcus aureus has been previously shown to be reliant on the acquisition of iron from host hemoproteins. The iron-regulated surface determinant system (Isd) encodes a heme transport apparatus containing three cell wall-anchored proteins (IsdA, IsdB, and IsdH) that are exposed on the staphylococcal surface and hence have the potential to interact with human hemoproteins. Here we report that S. aureus can utilize the host hemoproteins hemoglobin and myoglobin, but not hemopexin, as iron sources for bacterial growth. We demonstrate that staphylococci capture hemoglobin on the bacterial surface via IsdB and that inactivation of isdB, but not isdA or isdH, significantly decreases hemoglobin binding to the staphylococcal cell wall and impairs the ability of S. aureus to utilize hemoglobin as an iron source. Stable-isotope-tracking experiments revealed removal of heme iron from hemoglobin and transport of this compound into staphylococci. Importantly, mutants lacking isdB, but not isdH, display a reduction in virulence in a murine model of abscess formation. Thus, IsdB-mediated scavenging of iron from hemoglobin represents an important virulence strategy for S. aureus replication in host tissues and for the establishment of persistent staphylococcal infections.


Subject(s)
Cation Transport Proteins/metabolism , Heme/metabolism , Hemoglobins/metabolism , Iron/metabolism , Receptors, Cell Surface/metabolism , Staphylococcus aureus/pathogenicity , Animals , Cation Transport Proteins/genetics , Gene Expression Regulation, Bacterial , Heme/chemistry , Humans , Mice , Mice, Inbred BALB C , Mutation , Myoglobin/metabolism , Staphylococcal Infections/microbiology , Staphylococcus aureus/genetics , Staphylococcus aureus/growth & development , Staphylococcus aureus/metabolism , Virulence
8.
Science ; 306(5693): 91-4, 2004 Oct 01.
Article in English | MEDLINE | ID: mdl-15459385

ABSTRACT

Chemical interaction of Earth's mantle with the liquid outer core should influence the mantle's iron content. Osmium isotope ratios in Hawaiian lavas indicate a mass flux of

9.
Science ; 305(5690): 1626-8, 2004 Sep 10.
Article in English | MEDLINE | ID: mdl-15361626

ABSTRACT

Although bacteria use different iron compounds in vitGro, the possibility that microbes distinguish between these iron sources during infection has hitherto not been examined. We applied stable isotope labeling to detect source-specific iron by mass spectrometry and show that Staphylococcus aureus preferentially imports heme iron over transferrin iron. By combining this approach with computational genome analysis, we identified hts (heme transport system), a gene cluster that promotes preferred heme iron import by S. aureus. Heme iron scavenging by means of hts is required for staphylococcal pathogenesis in animal hosts, indicating that heme iron is the preferred iron source during the initiation of infection.


Subject(s)
ATP-Binding Cassette Transporters/metabolism , Heme/metabolism , Iron/metabolism , Staphylococcal Infections/microbiology , Staphylococcus aureus/metabolism , ATP-Binding Cassette Transporters/genetics , Abscess/microbiology , Animals , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biological Transport , Caenorhabditis elegans/microbiology , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cell Membrane/metabolism , Computational Biology , Cytoplasm/metabolism , Genes, Bacterial , Genome, Bacterial , Hemin/metabolism , Humans , Iron Isotopes , Kidney/microbiology , Liver/microbiology , Mass Spectrometry , Mice , Mice, Inbred BALB C , Mutagenesis, Insertional , Operon , Staphylococcus aureus/genetics , Staphylococcus aureus/growth & development , Staphylococcus aureus/pathogenicity , Transferrin/metabolism
10.
Science ; 299(5608): 906-9, 2003 Feb 07.
Article in English | MEDLINE | ID: mdl-12574635

ABSTRACT

The cell wall envelope of Gram-positive pathogens functions as a scaffold for the attachment of virulence factors and as a sieve that prevents diffusion of molecules. Here the isd genes (iron-regulated surface determinant) of Staphylococcus aureus were found to encode factors responsible for hemoglobin binding and passage of heme-iron to the cytoplasm, where it acts as an essential nutrient. Heme-iron passage required two sortases that tether Isd proteins to unique locations within the cell wall. Thus, Isd appears to act as an import apparatus that uses cell wall-anchored proteins to relay heme-iron across the bacterial envelope.


Subject(s)
Bacterial Proteins/metabolism , Cell Membrane/metabolism , Cell Wall/metabolism , Heme/metabolism , Iron/metabolism , Staphylococcus aureus/metabolism , Aminoacyltransferases/genetics , Aminoacyltransferases/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Biological Transport , Cysteine Endopeptidases , Cytoplasm/metabolism , Endopeptidases/metabolism , Genes, Bacterial , Hemoglobins/metabolism , Lysostaphin/metabolism , N-Acetylmuramoyl-L-alanine Amidase/metabolism , Protein Sorting Signals , Recombinant Fusion Proteins/metabolism , Staphylococcus aureus/genetics , Staphylococcus aureus/growth & development
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