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1.
Sensors (Basel) ; 23(18)2023 Sep 08.
Article in English | MEDLINE | ID: mdl-37765824

ABSTRACT

Too often, the testing and evaluation of object detection, as well as the classification techniques for high-resolution remote sensing imagery, are confined to clean, discretely partitioned datasets, i.e., the closed-world model. In recent years, the performance on a number of benchmark datasets has exceeded 99% when evaluated using cross-validation techniques. However, real-world remote sensing data are truly big data, which often exceed billions of pixels. Therefore, one of the greatest challenges regarding the evaluation of machine learning models taken out of the clean laboratory setting and into the real world is the difficulty of measuring performance. It is necessary to evaluate these models on a grander scale, namely, tens of thousands of square kilometers, where it is intractable to the ground truth and the ever-changing anthropogenic surface of Earth. The ultimate goal of computer vision model development for automated analysis and broad area search and discovery is to augment and assist humans, specifically human-machine teaming for real-world tasks. In this research, various models have been trained using object classes from benchmark datasets such as UC Merced, PatternNet, RESISC-45, and MDSv2. We detail techniques to scan broad swaths of the Earth with deep convolutional neural networks. We present algorithms for localizing object detection results, as well as a methodology for the evaluation of the results of broad-area scans. Our research explores the challenges of transitioning these models out of the training-validation laboratory setting and into the real-world application domain. We show a scalable approach to leverage state-of-the-art deep convolutional neural networks for the search, detection, and annotation of objects within large swaths of imagery, with the ultimate goal of providing a methodology for evaluating object detection machine learning models in real-world scenarios.

2.
Phys Rev Lett ; 106(2): 025002, 2011 Jan 14.
Article in English | MEDLINE | ID: mdl-21405235

ABSTRACT

We demonstrate controllable excitation of the center-of-mass longitudinal motion of a thermal antiproton plasma using a swept-frequency autoresonant drive. When the plasma is cold, dense, and highly collective in nature, we observe that the entire system behaves as a single-particle nonlinear oscillator, as predicted by a recent theory. In contrast, only a fraction of the antiprotons in a warm plasma can be similarly excited. Antihydrogen was produced and trapped by using this technique to drive antiprotons into a positron plasma, thereby initiating atomic recombination.

3.
Gynecol Oncol ; 118(1): 47-51, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20382413

ABSTRACT

BACKGROUND: Increased rates of bowel perforation in patients with recurrent epithelial ovarian cancer (EOC) treated with bevacizumab have been reported, but the risk factors for this association are uncertain. We sought to identify factors associated with bowel perforation and fistula formation in recurrent EOC patients treated with bevacizumab. METHODS: A chart review of all patients treated with bevacizumab for recurrent EOC at a single institution was performed. Pertinent patient characteristics and treatment information were collected. Univariate logistic regression was performed to analyze multiple variables. RESULTS: One hundred twelve patients who were treated with 160 different bevacizumab regimens were identified. The median age was 60 years (range, 29-78 years). Patients had received a median of 4 prior chemotherapy regimens (range, 1-10). The median number of cycles was 4 (range, 0.5-31). Ten patients (9%) were diagnosed with bowel perforations, and another 2 patients (1.8%) were diagnosed with fistulas. The 30-day mortality following perforation was 50%, with 30% of patients dying within 1 week. Patients with rectovaginal nodularity were more likely to develop a bowel perforation or fistula than those who did not have this finding, OR=3.64 (95% CI=1.1 to 12.1, p=0.04). None of the other variables were significantly associated with bowel perforations or fistula formation. CONCLUSIONS: Rectovaginal nodularity is associated with an increased risk of bowel perforation or fistula formation for patients with recurrent EOC treated with bevacizumab. Careful consideration should be given prior to initiating bevacizumab treatment in EOC patients with rectovaginal nodularity since the mortality rate with bevacizumab associated bowel perforations is 50%.


Subject(s)
Antibodies, Monoclonal/adverse effects , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Intestinal Perforation/chemically induced , Neoplasm Recurrence, Local/drug therapy , Ovarian Neoplasms/drug therapy , Adult , Aged , Angiogenesis Inhibitors/administration & dosage , Angiogenesis Inhibitors/adverse effects , Antibodies, Monoclonal/administration & dosage , Antibodies, Monoclonal, Humanized , Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Bevacizumab , Epithelial Cells/pathology , Fallopian Tube Neoplasms/drug therapy , Fallopian Tube Neoplasms/pathology , Female , Humans , Intestinal Perforation/pathology , Middle Aged , Neoplasm Recurrence, Local/pathology , Ovarian Neoplasms/pathology , Peritoneal Neoplasms/drug therapy , Peritoneal Neoplasms/pathology , Retrospective Studies , Risk Factors
4.
Gynecol Oncol ; 115(3): 396-400, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19804901

ABSTRACT

OBJECTIVE: To determine efficacy, toxicity, and survival in patients with recurrent epithelial ovarian cancer (EOC) receiving combination of weekly paclitaxel and biweekly bevacizumab (PB). METHODS: We reviewed chemotherapy logs identifying all patients receiving combination PB. Toxicities were graded using CTCAEv3.0 criteria. Response rates (RR) were measured using RECIST criteria or by CA-125 levels per modified Rustin criteria. RR and progression-free survival (PFS) were determined and plotted using Kaplan-Meier survival analysis. RESULTS: Fifty-one patients receiving at least two cycles of chemotherapy were evaluable for survival and 55 patients receiving one cycle of PB were evaluable in toxicity analysis. The mean number of previous regimens was four. The overall median PFS was 7 months and median OS was 12 months. The overall response rate (ORR) was 60% (CR 25% and PR 35%). Median PFS for complete and partial responders were 14 and 5 months respectively. Stable disease was seen in 26% with median PFS of 6 months. Thirteen experienced treatment delays for a variety of factors. The most G3/4 toxicities were fatigue (16%), hematologic (9%) and neurotoxicity (7%). Three patients (5%) experienced bowel perforations. CONCLUSIONS: Combination of paclitaxel and bevacizumab is feasible and demonstrates an acceptable toxicity profile and a high response rate. These observations should be useful in planning future clinical trials with this combination therapy.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/administration & dosage , Neoplasm Recurrence, Local/drug therapy , Ovarian Neoplasms/drug therapy , Adult , Aged , Antibodies, Monoclonal/administration & dosage , Antibodies, Monoclonal/adverse effects , Antibodies, Monoclonal, Humanized , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Bevacizumab , Disease-Free Survival , Drug Administration Schedule , Female , Humans , Middle Aged , Paclitaxel/administration & dosage , Paclitaxel/adverse effects , Retrospective Studies , Survival Rate
5.
Neurosci Lett ; 317(3): 161-5, 2002 Jan 14.
Article in English | MEDLINE | ID: mdl-11755264

ABSTRACT

The pathobiology of schizophrenia is poorly understood, and many neuroanatomical domains have been considered to underlie the pathophysiology of the disease. There is considerable clinical and neuroradiological evidence to support cerebellar involvement in the schizophrenic illness. We have analysed the changes in synaptic and cytoskeletal proteins in the cerebellum associated with schizophrenia. The cerebellar expression of tau and MAP2 proteins is similar in schizophrenia to that detected in age-matched controls, whereas the level of SNAP-25 is significantly depleted in the schizophrenic cerebellum. Other synaptic proteins, such as synaptophysin and syntaxin, are not affected. This provides evidence that alterations of the cerebellar synaptic network occur in schizophrenia. These changes may influence cerebellar-forebrain connections, especially those with the frontal lobes, and give rise to the cognitive dysmetria that is characteristic of the clinical phenotype in schizophrenia.


Subject(s)
Cerebellum/metabolism , Cytoskeletal Proteins/metabolism , Down-Regulation/physiology , Membrane Proteins/metabolism , Nerve Tissue Proteins/metabolism , Presynaptic Terminals/metabolism , Schizophrenia/metabolism , Adult , Aged , Aged, 80 and over , Cerebellum/pathology , Cerebellum/physiopathology , Female , Humans , Immunohistochemistry , Male , Microtubule-Associated Proteins/metabolism , Middle Aged , Neurotransmitter Agents/metabolism , Presynaptic Terminals/ultrastructure , Qa-SNARE Proteins , Schizophrenia/pathology , Schizophrenia/physiopathology , Synaptic Transmission/physiology , Synaptophysin/metabolism , Synaptosomal-Associated Protein 25 , tau Proteins/metabolism
6.
Pediatr Radiol ; 30(8): 573-8, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10993544

ABSTRACT

OBJECTIVE: To determine the effect of conversion to soft-copy interpretation on the number of images and imaging time. MATERIALS AND METHODS: Before and 1 year after conversion to soft-copy interpretation, 20 consecutive normal abdominal, renal, and cranial sonograms were performed by each of three technologists (360 sonograms total). The number of images and imaging time per sonogram were recorded. For each technologist and each examination type, the differences between number of images and the imaging times before and after conversion were compared. Multivariate repeated measures analysis of variance was used to analyze the data. RESULTS: After conversion to soft-copy, the number of images significantly increased for all imaging types (P = 0.004), and the imaging time significantly decreased (P < 0.001). After conversion, there were 213 more images. The average number of images increased 1.0 per abdominal sonogram, 0.5 per renal sonogram, and 2.0 per cranial sonogram. The additional storage requirement for the 213 images was 64 MB; total long-term storage media cost increased $1.06. On average, there was a 19% decrease in imaging time, with abdominal imaging time decreasing 2 min and 18 s, renal 1 min and 46 s, and cranial 40 s. This would potentially allow time for two additional sonograms to be performed per day and would generate up to $112,000 additional revenue per year. CONCLUSION: Following soft-copy conversion, there was a significant increase in the number of images acquired per examination, with an increased storage requirement but a negligible increase in storage cost. Technologist efficiency significantly improved.


Subject(s)
Ultrasonography , Abdomen/diagnostic imaging , Adult , Child , Cost Savings , Humans , Information Systems , Kidney/diagnostic imaging , Multivariate Analysis , Observer Variation , Radiology Information Systems , Retrospective Studies , Skull/diagnostic imaging , Time Factors , Ultrasonography/economics , Ultrasonography/methods , Ultrasonography/statistics & numerical data
7.
Am J Pathol ; 157(2): 623-36, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10934165

ABSTRACT

We have examined the relationships between dementia, loss of synaptic proteins, changes in the cytoskeleton, and deposition of beta-amyloid plaques in the neocortex in a clinicopathologically staged epidemiological cohort using a combination of biochemical and morphometric techniques. We report that loss of synaptic proteins is a late-stage phenomenon, occurring only at Braak stages 5 and 6, or at moderate to severe clinical grades of dementia. Loss of synaptic proteins was seen only after the emergence of the full spectrum of tau and beta-amyloid pathology in the neocortex at stage 4, but not in the presence of beta-amyloid plaques alone. Contrary to previous studies, we report increases in the levels of synaptophysin, syntaxin, and SNAP-25 at stage 3 and of alpha-synuclein and MAP2 at stage 4. Minimal and mild clinical grades of dementia were associated with either unchanged or elevated levels of synaptic proteins in the neocortex. Progressive aggregation of paired helical filament (PHF)-tau protein could be detected biochemically from stage 2 onwards, and this was earliest change relative to the normal aging background defined by Braak stage 1 that we were able to detect in the neocortex. These results are consistent with the possibility that failure of axonal transport associated with early aggregation of tau protein elicits a transient adaptive synaptic response to partial de-afferentation that may be mediated by trophic factors. This early abnormality in cytoskeletal function may contribute directly to the earliest clinically detectable stages of dementia.


Subject(s)
Alzheimer Disease/metabolism , Amyloid beta-Peptides/metabolism , Cytoskeleton/metabolism , Neocortex/metabolism , Synapses/metabolism , Alzheimer Disease/pathology , Disease Progression , Female , Humans , Male , Membrane Proteins/metabolism , Microtubule-Associated Proteins/metabolism , Neocortex/pathology , Nerve Tissue Proteins/metabolism , Neurofibrillary Tangles/pathology , Phosphorylation , Plaque, Amyloid/pathology , Qa-SNARE Proteins , Severity of Illness Index , Synaptophysin/metabolism , Synaptosomal-Associated Protein 25 , Synucleins , alpha-Synuclein , tau Proteins/metabolism
8.
J Neuropathol Exp Neurol ; 59(5): 408-17, 2000 May.
Article in English | MEDLINE | ID: mdl-10888371

ABSTRACT

Alpha-synuclein has assumed particular neuropathological interest in the light both of its identification as a non-beta-amyloid plaque constituent in Alzheimer disease (AD), and the recent association between dominant inheritance of Parkinson disease (PD) and 2 missense mutations at positions 30 and 53 of the synuclein protein. We report a systematic study of alpha-synuclein, tau, and ubiquitin immunoreactivity in representative neurodegenerative disorders of late life. The alpha-synuclein association with Lewy bodies is variable, peripheral, and is not stable with respect to proteases or acid treatment, whereas there is no association with Pick bodies. Stable patterns of immunoreactivity included neurites and a novel inclusion body. Although there is an overlap between the presence of Lewy bodies and stable alpha-synuclein immunoreactivity, this is seen only in the presence of concomitant neuropathological features of AD. The novel alpha-synuclein inclusion body identified in pyramidal cells of the medial temporal lobe in particular was found in AD and in the Lewy body variant of AD, and was associated neither with ubiquitin nor tau protein. The inclusion is therefore neither a Lewy body nor a PHF-core body, but may be confused with the Lewy body, particularly in the Lewy body variant of AD. Abnormal processing of alpha-synuclein leading to its deposition in the form of proteolytically stable deposits is a particular feature of the intermediate stages of AD.


Subject(s)
Alzheimer Disease/metabolism , Inclusion Bodies/metabolism , Lewy Body Disease/metabolism , Nerve Tissue Proteins/metabolism , Aged , Aged, 80 and over , Alzheimer Disease/pathology , Brain/metabolism , Brain/pathology , Entorhinal Cortex/metabolism , Entorhinal Cortex/pathology , Female , Hippocampus/metabolism , Hippocampus/pathology , Humans , Immunohistochemistry , Inclusion Bodies/pathology , Lewy Body Disease/pathology , Male , Microscopy, Confocal , Microscopy, Fluorescence , Middle Aged , Synucleins , alpha-Synuclein
9.
Free Radic Biol Med ; 28(7): 1017-29, 2000 Apr 01.
Article in English | MEDLINE | ID: mdl-10832063

ABSTRACT

Manganese porphyrin complexes serve to catalytically scavenge superoxide, hydrogen peroxide, and peroxynitrite. Herein, reactions of manganese 5,10,15,20-tetrakis(N-ethylpyridinium-2-yl)porphyrin (MnTE-2-PyP(5+)) with lipids and lipid hydroperoxides (LOOH) are examined. In linoleic acid and human low-density lipoprotein (LDL), MnTE-2-PyP(5+) promotes oxidative reactions when biological reductants are not present. By redox cycling between Mn(+3) and Mn(+4) forms, MnTE-2-PyP(5+) initiates lipid peroxidation via decomposition of 13(S)hydroperoxyoctadecadienoic acid [13(S)HPODE], with a second-order rate constant of 8.9 x 10(3) M(-1)s(-1)and k(cat) = 0.32 s(-1). Studies of LDL oxidation demonstrate that: (i) MnTE-2-PyP(5+) can directly oxidize LDL, (ii) MnTE-2-PyP(5+) does not inhibit Cu-induced LDL oxidation, and (iii) MnTE-2-PyP(5+) plus a reductant partially inhibit lipid peroxidation. MnTE-2-PyP(5+) (1-5 microM) also significantly inhibits FeCl(3) plus ascorbate-induced lipid peroxidation of rat brain homogenate. In summary, MnTE-2-PyP(5+) initiates membrane lipid and lipoprotein oxidation in the absence of biological reductants, while MnTE-2-PyP(5+) inhibits lipid oxidation reactions initiated by other oxidants when reductants are present. It is proposed that, as the Mn(+3) resting redox state of MnTE-2-PyP(5+) becomes oxidized to the Mn(+4) redox state, LOOH is decomposed to byproducts that propagate lipid oxidation reactions. When the manganese of MnTE-2-PyP(5+) is reduced to the +2 state by biological reductants, antioxidant reactions of the metalloporphyrin are favored.


Subject(s)
Lipids/chemistry , Lipoproteins/chemistry , Manganese/chemistry , Metalloporphyrins/chemistry , Animals , Brain Chemistry/drug effects , Catalysis , Chromatography, Thin Layer , Free Radical Scavengers/chemistry , Free Radical Scavengers/pharmacology , Humans , Linoleic Acid/chemistry , Linoleic Acids/chemistry , Lipid Peroxidation , Lipid Peroxides/chemistry , Lipoproteins, LDL/blood , Male , Mass Spectrometry , Metalloporphyrins/pharmacology , Oxidation-Reduction , Rats , Rats, Sprague-Dawley
10.
Oncogene ; 16(14): 1825-38, 1998 Apr 09.
Article in English | MEDLINE | ID: mdl-9583680

ABSTRACT

Cell cycle checkpoints and tumor suppressor gene functions appear to be required for the maintenance of a stable genome in proliferating cells. In this study chromosomal destabilization was monitored in relation to telomere structure, lifespan control and G2 checkpoint function. Replicative senescence was inactivated in secondary cultures of human skin fibroblasts by expressing the human papillomavirus type 16 (HPV-16) E6 oncoprotein to inactivate p53. Chromosome aberrations were enumerated during in vitro aging of isogenic control (F5neo) and HPV-16E6-expressing (F5E6) fibroblasts. We found that structural and numerical aberrations in chromosomes were significantly increased in F5E6 cells during aging in vitro and fluorescence in situ hybridization (FISH) analysis using chromosome-specific probes demonstrated the occurrence of rearrangements involving chromosome 4 and 6 in genetically unstable F5E6 cells. Flow cytometry and karyotypic analyses revealed increased polyploidy and aneuploidy in F5E6 cells only at passages > 16, although these cells displayed defective mitotic spindle checkpoint function associated with inactivation of p53 at passages 5 and 16. G2 checkpoint function was confirmed to be gradually but progressively inactivated during in vitro aging of E6-expressing cells. Aging of F5neo fibroblasts was documented during in vitro passaging by induction of a senescence-associated marker, pH 6.0 lysosomal beta-galactosidase. F5E6 cells displayed extension of in vitro lifespan and did not induce beta-galactosidase at high passage. Erosion of telomeres during in vitro aging of telomerase-negative F5neo cells was demonstrated by Southern hybridization and by quantitative FISH analysis on an individual cell level. Telomeric signals diminished continuously as F5neo cells aged in vitro being reduced by 80% near the time of replicative senescence. Telomeric signals detected by FISH also decreased continuously during aging of telomerase-negative F5E6 cells, but telomeres appeared to be stabilized at passage 34 when telomerase was expressed. Chromosomal instability in E6-expressing cells was correlated (P < 0.05) with both loss of telomeric signals and inactivation of G2 checkpoint function. The results suggest that chromosomal stability depends upon a complex interaction among the systems of telomere length maintenance and cell cycle checkpoints.


Subject(s)
Chromosome Aberrations/genetics , G2 Phase/genetics , Oncogene Proteins, Viral/genetics , Papillomaviridae/genetics , Repressor Proteins , Telomere/genetics , Cell Line , Cellular Senescence/genetics , Chromosomes, Human, Pair 4 , Chromosomes, Human, Pair 6 , Fibroblasts/enzymology , Fibroblasts/metabolism , Humans , In Situ Hybridization, Fluorescence , Oncogene Proteins, Viral/biosynthesis , Polymorphism, Restriction Fragment Length , Spindle Apparatus/genetics , Telomerase/biosynthesis , Telomere/pathology , Translocation, Genetic/genetics , Tumor Suppressor Protein p53/drug effects , Tumor Suppressor Protein p53/metabolism , beta-Galactosidase/analysis
11.
Protein Sci ; 7(3): 556-63, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9541386

ABSTRACT

Carbonic anhydrase IV (CAIV) is a membrane-associated enzyme anchored to plasma membrane surfaces by a phosphatidylinositol glycan linkage. We have determined the 2.8-angstroms resolution crystal structure of a truncated, soluble form of recombinant murine CAIV. We have also determined the structure of its complex with a drug used for glaucoma therapy, the sulfonamide inhibitor brinzolamide (Azopt). The overall structure of murine CAIV is generally similar to that of human CAIV; however, some local structural differences are found in the active site resulting from amino acid sequence differences in the "130's segment" and the residue-63 loop (these may affect the nearby catalytic proton shuttle, His-64). Similar to human CAIV, the C-terminus of murine CAIV is surrounded by a substantial electropositive surface potential that may stabilize the interaction with the phospholipid membrane. Binding interactions observed for brinzolamide rationalize the generally weaker affinity of inhibitors used in glaucoma therapy toward CAIV compared with CAII.


Subject(s)
Carbonic Anhydrase Inhibitors/chemistry , Carbonic Anhydrases/ultrastructure , Sulfonamides/chemistry , Thiazines/chemistry , Amino Acid Sequence , Animals , Crystallography, X-Ray , Glycosylphosphatidylinositols , Histidine , Humans , Isoenzymes/ultrastructure , Metalloproteins/ultrastructure , Mice , Models, Molecular , Molecular Sequence Data , Protein Structure, Tertiary , Structure-Activity Relationship , Zinc
12.
Protein Expr Purif ; 12(1): 7-16, 1998 Feb.
Article in English | MEDLINE | ID: mdl-9473451

ABSTRACT

A 1193-bp cDNA containing the complete murine carbonic anhydrase IV coding sequence was isolated from a Balb/c kidney cDNA library. The entire coding sequence plus shorter segments was used in an Escherichia coli T7 expression vector system to produce four forms of murine CA IV, including (1) a protein representing the full-length coding sequence, (2) an amino-truncated protein lacking the 18 N-terminal amino acid plasma membrane targeting sequence, (3) a protein which lacked the plasma membrane targeting sequence and 26 C-terminal amino acids, and (4) a protein which lacked both 36 N-terminal residues (the plasma membrane targeting sequence plus 18 additional amino acids which included the first two cysteines) and 26 C-terminal residues. All four proteins were expressed as catalytically inactive inclusion bodies. After rapid dilution of washed, guanidine hydrochloride-denatured inclusion bodies into a glutathione-, l-arginine-containing renaturation buffer, an active carbonic anhydrase IV at yields of 3-4 mg/liter was easily purified from cultures expressing the form lacking the N-terminal targeting sequence and 26 C-terminal residues. The longest and shortest forms of carbonic anhydrase IV failed to refold into active enzyme under these conditions. The activity of purified recombinant carbonic anhydrase IV was highly resistant to sodium dodecyl sulfate, as is the native enzyme. This resistance presumably results from intramolecular disulfide bonds maintaining a functional active site configuration even in the presence of denaturing agents.


Subject(s)
Carbonic Anhydrases/genetics , Carbonic Anhydrases/isolation & purification , Amino Acid Sequence , Animals , Base Sequence , Binding Sites , Carbonic Anhydrases/chemistry , Cloning, Molecular , DNA Primers/genetics , DNA, Complementary/genetics , Escherichia coli/genetics , Gene Expression , Humans , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Protein Folding , Rats , Sequence Homology, Amino Acid
13.
Cell Growth Differ ; 8(10): 1105-14, 1997 Oct.
Article in English | MEDLINE | ID: mdl-9342189

ABSTRACT

Chromosomal stability was linked to G2 checkpoint function in human fibroblasts expressing the human papillomavirus type 16 E6 oncoprotein. Soon after expression of E6, cells displayed an undamaged, diploid karyotype and normal mitotic delay after gamma-irradiation. As the E6-expressing cells aged through their in vitro life span, G2 checkpoint function diminished progressively. After 30-70 population doublings, 60-86% of the E6 cells displayed defective G2 checkpoint response. This attenuation of G2 checkpoint function was also associated with radiation-resistant cyclin B1/CDK1 protein kinase activity. Numerical and structural abnormalities of chromosomes developed in unirradiated E6 cells with kinetics that mirrored the loss of G2 checkpoint function. A significant correlation between inactivation of the G2 checkpoint and acquisition of chromosomal abnormalities was found, suggesting that the G2 checkpoint represents a barrier to genetic instability in cells lacking G1 checkpoint function.


Subject(s)
Chromosome Breakage/physiology , G2 Phase/physiology , G2 Phase/radiation effects , Oncogene Proteins, Viral/metabolism , CDC2 Protein Kinase/analysis , Cell Culture Techniques/methods , Cells, Cultured , Cellular Senescence , Cyclin B/analysis , Cyclin B1 , DNA/analysis , DNA/drug effects , Dose-Response Relationship, Radiation , Fibroblasts/metabolism , Fibroblasts/radiation effects , Flow Cytometry , G1 Phase/physiology , G1 Phase/radiation effects , Genes, p53/physiology , Humans , Maturation-Promoting Factor/radiation effects , Microscopy, Fluorescence , Ploidies , Propidium/pharmacology , Repressor Proteins/metabolism , S Phase , Spindle Apparatus/physiology
14.
J Biol Chem ; 272(21): 13512-8, 1997 May 23.
Article in English | MEDLINE | ID: mdl-9153196

ABSTRACT

A cDNA encoding the murine carbonic anhydrase IV (mCA IV) gene, modified to resemble a form of mature human carbonic anhydrase IV (Okuyama, T., Waheed, A., Kusumoto, W., Zhu, X. L., and Sly, W. S. (1995) Arch. Biochem. Biophys. 320, 315-322), was expressed in Escherichia coli. Inactive inclusion bodies were collected and refolded, and active enzyme was purified; the resulting mCA IV was used to characterize the catalysis of CO2 hydration using stopped flow spectrophotometry and 18O exchange between CO2 and water. Unlike previously studied isozymes in this class of carbonic anhydrase, the pH profile for kcat for hydration of CO2 catalyzed by mCA IV could not be described by a single ionization, suggesting multiple proton transfer pathways between the zinc-bound water molecule and solution. A role for His64 in transferring protons between the zinc-bound water and solution was confirmed by the 100-fold lower activity of the mutant of mCA IV containing the replacement His64 --> Ala. The remaining activity in this mutant at pH levels near 9 suggested a second proton shuttle mechanism. The maximal turnover number kcat for hydration of CO2 catalyzed by mCA IV was 1.1 x 10(6) s-1 at pH > 9. A pKa of 6.6 was estimated for the zinc-bound water molecule in mCA IV.


Subject(s)
Carbonic Anhydrases/metabolism , Isoenzymes/metabolism , Amino Acid Sequence , Animals , Carbon Dioxide/metabolism , Carbonic Anhydrase Inhibitors/pharmacology , Carbonic Anhydrases/genetics , Catalysis , DNA, Complementary/chemistry , DNA, Complementary/isolation & purification , Humans , Hydrogen-Ion Concentration , Inclusion Bodies/enzymology , Isoenzymes/genetics , Kinetics , Mice , Molecular Sequence Data , Mutagenesis, Site-Directed , Sequence Alignment , Spectrophotometry
15.
Cancer Res ; 57(1): 68-74, 1997 Jan 01.
Article in English | MEDLINE | ID: mdl-8988043

ABSTRACT

In response to DNA damage, cells transduce a signal that leads to accumulation and activation of p53 protein, transcriptional induction of several genes, including p21, gadd45, and gadd153, and cell cycle arrest. One hypothesis is that the signal is mediated by DNA-dependent protein kinase (DNA-PK), which consists of a catalytic subunit (DNA-PKcs) and a regulatory subunit (Ku). DNA-PK has several characteristics that support this hypothesis: Ku binds to DNA damaged by nicks or double-strand breaks, DNA-PKcs is activated when Ku binds to DNA, DNA-PK will phosphorylate p53 and other cell cycle regulatory proteins in vitro, and DNA-PKcs shares homology with ATM, which is mutated in ataxia telangiectasia and involved in signaling the p53 response to ionizing radiation. The hypothesis was tested by analyzing early passage fibroblasts from severe combined immunodeficient mice, which are deficient in DNA-PK. After exposure to ionizing radiation, UV radiation, or methyl methane-sulfonate, severe combined immunodeficient and wild-type cells were indistinguishable in their response. The accumulation of p53, induction of p21, gadd45, and gadd153, and arrest of the cell cycle in G1 and G2 occurred normally. Therefore, DNA-PK is not required for the p53 response or cell cycle arrest after DNA damage.


Subject(s)
CCAAT-Enhancer-Binding Proteins , DNA Damage/physiology , G1 Phase/physiology , G2 Phase/physiology , Protein Serine-Threonine Kinases/physiology , Tumor Suppressor Protein p53/metabolism , Animals , Animals, Newborn , Cricetinae , Cyclin-Dependent Kinase Inhibitor p21 , Cyclins/genetics , Cyclins/metabolism , DNA/drug effects , DNA/radiation effects , DNA-Activated Protein Kinase , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Fibroblasts/drug effects , Fibroblasts/enzymology , Fibroblasts/radiation effects , G1 Phase/genetics , G2 Phase/genetics , Intracellular Signaling Peptides and Proteins , Mice , Mice, Inbred BALB C , Mice, SCID , Proteins/genetics , Proteins/metabolism , Transcription Factor CHOP , Transcription Factors/genetics , Transcription Factors/metabolism , Transcription, Genetic , GADD45 Proteins
16.
Dementia ; 5(5): 215-28, 1994.
Article in English | MEDLINE | ID: mdl-7951676

ABSTRACT

We have used biochemical assays to examine cingulate and occipital cortices from age-matched cases of Alzheimer's disease (AD; n = 12), senile dementia of the Lewy body type (SDLT; n = 13), Parkinson's disease (PD; 5 non-demented cases and 7 cognitively impaired cases) and controls (n = 11) for paired helical filaments (PHFs), phosphorylated and normal tau protein and beta/A4-protein. Whereas cingulate cortex is characterised by relatively high densities of cortical Lewy bodies in the SDLT cases and lower numbers in PD, these inclusion bodies were absent in the cingulate cortex from AD and control cases. Protease-resistant PHFs and hyperphosphorylated tau protein were found in AD and, at low levels, in a minority of SDLT cases. Qualitatively, both of these preparations were indistinguishable in SDLT from those found in AD but levels of both parameters in SDLT were less than 5% of those in AD. SDLT, PD and control groups did not differ from each other in terms of the quantity of protease-resistant PHFs or the level of hyperphosphorylated tau. Furthermore, PHF accumulation did not distinguish between PD cases with or without dementia. The levels of normal tau protein did not differ between the four groups. beta/A4 protein levels did not distinguish between PD and control groups, between AD and SDLT groups, or between SDLT and control groups for either cingulate or occipital cortices. Thus extensive accumulation of PHFs in either neurofibrillary tangles or dystrophic neurites is not a feature of either SDLT or PD. Our findings provide molecular support for the neuropathological and clinical separation of SDLT as a form of dementia that is distinct from AD.


Subject(s)
Alzheimer Disease/metabolism , Dementia/metabolism , Neurofibrillary Tangles/chemistry , Parkinson Disease/metabolism , tau Proteins/chemistry , Aged , Aged, 80 and over , Alzheimer Disease/pathology , Dementia/pathology , Female , Gyrus Cinguli/chemistry , Humans , Lewy Bodies/pathology , Male , Microscopy, Immunoelectron , Occipital Lobe/chemistry , Parkinson Disease/pathology , Phosphorylation
17.
Biochim Biophys Acta ; 1158(2): 120-8, 1993 Oct 03.
Article in English | MEDLINE | ID: mdl-7691181

ABSTRACT

Antibodies to synthetic peptides corresponding to different regions of beta/A4-protein recognize deposits of amyloid in the brains of patients with Alzheimer's disease. Down's syndrome cases and in the normal ageing brain. We have prepared a monoclonal antibody, mAb 22.212, raised against a synthetic C-terminal peptide of beta/A4 protein (residues 28-40) which labelled senile plaques in Alzheimer's disease after proteolytic treatment of tissue sections. In addition to recognising synthetic beta/A4-peptides that include the C-terminal residues 28-42, the mAb 22.212 was found to cross-react with a soluble, 47 kDa protein found in brain homogenates. This protein was shown, by amino acid sequence analysis and immunoassay, to be neuron-specific enolase (NSE). The mAb 22.212 did not recognize the non-neuronal enolase (NNE) or muscle-specific enolase (MSE) isoforms and its epitope was mapped to a short stretch of amino-acids unique to NSE, near the C-terminus. The cross-reactive NSE epitope is sited between residues 402-423 in NSE and shows no common sequence with beta/A4, perhaps suggesting that it is a conformational epitope. The significance and applications of these findings are discussed.


Subject(s)
Amyloid beta-Peptides/immunology , Antibodies, Monoclonal , Epitopes/analysis , Phosphopyruvate Hydratase/analysis , Alzheimer Disease/pathology , Amino Acid Sequence , Amyloid beta-Peptides/chemistry , Animals , Antibodies, Monoclonal/immunology , Antibody Specificity , Cross Reactions , Epitopes/immunology , Hippocampus/chemistry , Hippocampus/pathology , Humans , Immunohistochemistry , Mice , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/immunology , Phosphopyruvate Hydratase/immunology
18.
Nucleic Acids Res ; 20(12): 2985-90, 1992 Jun 25.
Article in English | MEDLINE | ID: mdl-1620593

ABSTRACT

The mitochondrial enzyme, manganese superoxide dismutase (MnSOD) is an integral component of the cell's defense against superoxide-mediated cellular damage. We have isolated and characterized four cDNA clones and the structural gene for rat MnSOD. Northern analyses using MnSOD cDNA probes detected at least five mRNAs in all tissues and cell types examined. Southern and Northern analysis using a 3' non-coding sequence probe, common to all the cDNAs, showed hybridization only to genomic restriction fragments that correspond to our genomic clone and the five MnSOD mRNAs. These data demonstrate that all of the rat MnSOD transcripts are derived from a single functional gene. Primer extension data indicate that transcription initiation is clustered within a few bases. Northern analysis using intron probes demonstrates that all five transcripts are fully processed. Northern analysis using cDNA and genomic probes from sequences progressively 3' to the end of the coding sequence indicates that size heterogeneity in the MnSOD transcripts results from variations in the length of the 3' non-coding sequence. From this data and the location of potential polyadenylation signals near the expected sites of transcript termination, we conclude that the existence of multiple MnSOD mRNA species originate as the result of alternate polyadenylation.


Subject(s)
Poly A/genetics , RNA, Messenger/genetics , Superoxide Dismutase/genetics , Animals , Blotting, Northern , Blotting, Southern , Cloning, Molecular , DNA Probes/genetics , Genomic Library , Introns/genetics , Poly A/metabolism , Rats
19.
J Clin Psychol ; 48(1): 120-8, 1992 Jan.
Article in English | MEDLINE | ID: mdl-1556207

ABSTRACT

This study compared the performance of 30 White adolescent males (M age = 15 years, 8 months; SD = 7 months) and 30 incarcerated White male delinquents (M age = 15 years, 6 months, SD = 8 months) on measures of planning, attention, simultaneous, and successive cognitive processes. Normal and delinquent samples did not differ on measures of planning, simultaneous, or successive processes, but did differ significantly in selective attention. The results help clarify previous equivocal findings of attention and planning deficiencies in delinquents and suggest that A. R. Luria's model of functioning may provide a useful perspective for conceptualization of this group's cognitive competence.


Subject(s)
Attention , Concept Formation , Impulsive Behavior/psychology , Juvenile Delinquency/psychology , Mental Recall , Problem Solving , Psychomotor Performance , Adolescent , Arousal , Humans , Impulsive Behavior/diagnosis , Male , Neuropsychological Tests/statistics & numerical data , Psychometrics
20.
J Am Optom Assoc ; 59(8): 623-8, 1988 Aug.
Article in English | MEDLINE | ID: mdl-3171066

ABSTRACT

We conducted a two-part study to evaluate patient satisfaction with the Corning CPF-550 lenses and to determine whether or not the success of these lenses can be attributed to their selective attenuation of the short wave-lengths of light. In the first part of our investigation we asked nine low vision patients who were currently wearing CPF-550 lenses to evaluate the performance of the tint. Their responses were generally very favorable. In the second part of the study, seven of those patients were given identical prescriptions made of C-Lite material with a solid gray tint on the back surface and a photo-gray extra front surface. They were asked to compare the two filters. To our surprise, six of the seven preferred the more neutral density C-Lite lenses over the CPF-550 filter. Although we have been encouraged by the results of the first part of the study to continue prescribing the CPF-550 lenses, the second part of the study has caused us to question the theory behind the success of these lenses and has alerted us to the fact that some individuals may be even more satisfied with a neutral gray photochromic tint.


Subject(s)
Eyeglasses , Adult , Aged , Consumer Behavior , Eye Diseases/rehabilitation , Female , Humans , Male , Middle Aged , Optics and Photonics
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