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1.
Bone Joint Res ; 5(10): 444-452, 2016 10.
Article in English | MEDLINE | ID: mdl-27765735

ABSTRACT

OBJECTIVES: The annual incidence of hip fracture is 620 000 in the European Union. The cost of this clinical problem has been estimated at 1.75 million disability-adjusted life years lost, equating to 1.4% of the total healthcare burden in established market economies. Recent guidance from The National Institute for Health and Clinical Excellence (NICE) states that research into the clinical and cost effectiveness of total hip arthroplasty (THA) as a treatment for hip fracture is a priority. We asked the question: can a trial investigating THA for hip fracture currently be delivered in the NHS? METHODS: We performed a contemporaneous process evaluation that provides a context for the interpretation of the findings of WHiTE Two - a randomised study of THA for hip fracture. We developed a mixed methods approach to situate the trial centre within the context of wider United Kingdom clinical practice. We focused on fidelity, implementation, acceptability and feasibility of both the trial processes and interventions to stakeholder groups, such as healthcare providers and patients. RESULTS: We have shown that patients are willing to participate in this type of research and that surgeons value being part of a team that has a strong research ethos. However, surgical practice does not currently reflect NICE guidance. Current models of service delivery for hip fractures are unlikely to be able to provide timely total hip arthroplasty for suitable patients. CONCLUSIONS: Further observational research should be conducted to define the population of interest before future interventional studies are performed.Cite this article: C. Huxley, J. Achten, M. L. Costa, F. Griffiths, X. L. Griffin. A process evaluation of the WHiTE Two trial comparing total hip artroplasty with and without dual mobility component in the treatment of displaced intracapsular fractures of the proximal femur: Can a trial investigating total hip arthroplasty for hip fracture be delivered in the NHS? Bone Joint Res 2016;5:444-452. DOI: 10.1302/2046-3758.510.BJR-2015-0008.R1.

2.
Chromosome Res ; 13(4): 411-22, 2005.
Article in English | MEDLINE | ID: mdl-15973505

ABSTRACT

Clones from one BAC and one PAC library carrying centromeric alphoid DNA were characterized and found to be stable but to differ according to the enzyme used to make the library. Five different clones with homogeneous alphoid DNA, derived from chromosomes 13/21, 14/22, 17 and 18, were all shown to form minichromosomes de novo after transfection into the human cell line HT1080 in greater than 29% of the cell lines analysed. Similarly sized alphoid arrays (110-160 kb) from chromosomes 17, 13/21 and 14/22 all formed minichromosomes in about 50% of the cell lines analysed while a smaller array (50 kb) of 14/22 alphoid was less efficient (29% of cell lines) and a larger array (200 kb) from chromosome 18 was more efficient (2/2 cell lines). Thus the larger arrays of alphoid DNA gave higher percentages of cell lines with minichromosomes. However, smaller arrays may be preferable for gene expression as there appeared to be more EGFP expression from these minichromosomes.


Subject(s)
Chromosomes/genetics , Chromosomes/metabolism , DNA, Satellite/genetics , Centromere/metabolism , Chromosomes/chemistry , Chromosomes, Artificial, Bacterial/genetics , Chromosomes, Artificial, P1 Bacteriophage/genetics , Cloning, Molecular , Humans , Sequence Analysis, DNA
3.
J Gene Med ; 6(2): 195-209, 2004 Feb.
Article in English | MEDLINE | ID: mdl-14978773

ABSTRACT

BACKGROUND: The ability to deliver large (>100 kb) fragments of DNA to mammalian cells in vitro and in vivo is becoming increasingly important with the availability of BAC and PAC constructs for gene expression. Here we investigate in vitro and in vivo delivery of BACs up to 157 kb. METHODS: Different types of polyethylenimine (PEI) and Lipofectamine were used to deliver 150-kb BAC (bacterial artificial chromosome) DNA to mouse and human cell lines in tissue culture and the level of EGFP expression compared. To assess the intactness of the DNA delivered, a BAC carrying oriP/EBNA-1 was used to make stably transfected cell lines. Episomal DNA was then rescued into E. coli followed by analysis on a pulsed-field gel. Three different methods of in vivo delivery were also assessed for delivery of BAC DNA; intravenous injection of DNA/PEI particles, intramuscular injection with electroporation and high-volume injection into the tail vein. RESULTS: PEI22 (linear polymer form, 22 kDa) was found to be the most efficient method for delivery of 150-kb BAC DNA to both cell lines in tissue culture. However, Lipofectamine 2000 was found to give a higher proportion of intact DNA than PEI22 in stably transformed colonies and almost all the DNA delivered by Lipofectamine 2000 was intact. Intravenous injection of DNA/PEI particles was found to be inefficient for delivery of BAC DNA. Intramuscular injection with electroporation of pure BAC DNA was very efficient and expression was maintained for 105 days. High-volume injection of BAC DNA gave excellent expression in the liver and intact BAC DNA could be rescued 7 days after injection. CONCLUSIONS: These results demonstrate efficient delivery of intact, large (up to 157 kb) DNA constructs for in vitro gene expression and in vivo gene therapy applications.


Subject(s)
Chromosomes, Artificial, Bacterial , Gene Transfer Techniques , Genetic Vectors , Animals , Electroporation , Epstein-Barr Virus Nuclear Antigens/genetics , Epstein-Barr Virus Nuclear Antigens/metabolism , Genetic Vectors/administration & dosage , Humans , In Vitro Techniques , Injections, Intravenous , Lipids , Mice , Plasmids , Polyethyleneimine , Transfection
4.
Br J Ophthalmol ; 88(3): 428-32, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14977782

ABSTRACT

BACKGROUND/AIMS: To report the generation of a new mouse model for a genetically determined corneal abnormality that occurred in transgenesis experiments. METHODS: Transgenic mice expressing mutant forms of Rab27a, a GTPase that has been implicated in the pathogenesis of choroideremia, were generated. RESULTS: Only one transgenic line (T27aT15) exhibited an unexpected eye phenotype. T27aT15 mice developed corneal opacities, usually unilateral, and cataracts, resulting in some cases in phthisical eyes. Histologically, the corneal stroma was thickened and vacuolated, and both epithelium and endothelium were thinned. The posterior segment of the eye was also affected with abnormal pigmentation, vessel narrowing, and abnormal leakage of dye upon angiography but was histologically normal. CONCLUSION: Eye abnormality in T27aT15 mice results from random insertional mutagenesis of the transgene as it was only observed in one line. The corneal lesion observed in T27aT15 mice most closely resembles posterior polymorphous corneal dystrophy and might result from the disruption of the equivalent mouse locus.


Subject(s)
Corneal Dystrophies, Hereditary/genetics , Models, Animal , Mutagenesis, Insertional , rab GTP-Binding Proteins/genetics , Animals , Corneal Dystrophies, Hereditary/pathology , Fluorescein Angiography , Fundus Oculi , Mice , Mice, Inbred C57BL , Mice, Transgenic , Phenotype , rab27 GTP-Binding Proteins
5.
J Anat ; 200(4): 377-90, 2002 Apr.
Article in English | MEDLINE | ID: mdl-12090404

ABSTRACT

Charcot-Marie-Tooth disease type 1A is a dominantly inherited demyelinating disorder of the peripheral nervous system. It is most frequently caused by overexpression of peripheral myelin protein 22 (PMP22), but is also caused by point mutations in the PMP22 gene. We describe a new transgenic mouse model (My41) carrying the mouse, rather than the human, pmp22 gene. The My41 strain has a severe phenotype consisting of unstable gait and weakness of the hind limbs that becomes obvious during the first 3 weeks of life. My41 mice have a shortened life span and breed poorly. Pathologically, My41 mice have a demyelinating peripheral neuropathy in which 75% of axons do not have a measurable amount of myelin. We compare the peripheral nerve pathology seen in My41 mice, which carry the mouse pmp22 gene, with previously described transgenic mice over-expressing the human PMP22 protein and Trembler-J (TrJ) mice which have a P16L substitution. We also look at the differences between CMT1A duplication patients, patients with the P16L mutation and their appropriate mouse models.


Subject(s)
Charcot-Marie-Tooth Disease/genetics , Mice, Transgenic , Models, Animal , Myelin Proteins/genetics , Animals , Charcot-Marie-Tooth Disease/pathology , Gene Expression , Humans , Mice , Myelin Sheath/physiology , Nerve Fibers/pathology
6.
Genomics ; 77(3): 127-34, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11597137

ABSTRACT

Exon 9 of the human gene CFTR is skipped in some mRNA transcripts in human tissues. The level of skipping correlates with the number of TG's and T's in the 5' splice acceptor of exon 9. Poorly spliced alleles are associated with mild cystic fibrosis related phenotypes. Here we describe transgenic mice carrying a yeast artificial chromosome (YAC) with the intact human gene CFTR. When the YAC carries 10 TG's and 7 T's at the splice acceptor, there is about 50% skipping of exon 9 in most tissues, whereas 12 TG's and 5 T's give about 90% skipping. The level of skipping is quite uniform over many tissues, except the testis, in which there is a much higher level of correct splicing. These mice confirm that the TG(m)T(n) polymorphism has an effect on splicing and should be valuable for studying this phenomenon.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Exons , RNA Splicing , Alleles , Animals , Cell Line , Chromosomes, Artificial, Yeast , Cystic Fibrosis/genetics , Digestive System/metabolism , Female , Gene Expression , Humans , Male , Mice , Mice, Transgenic , Mutation , Polymorphism, Genetic , RNA Splice Sites , RNA, Messenger/genetics , RNA, Messenger/metabolism , Testis/metabolism , Transgenes
8.
Hum Mol Genet ; 10(14): 1455-64, 2001 Jul 01.
Article in English | MEDLINE | ID: mdl-11448937

ABSTRACT

The elements controlling the complex developmental and tissue-specific expression of the cystic fibrosis transmembrane conductance regulator (CFTR) gene lie outside the basal promoter region and have not been characterized. We previously identified a tissue-specific DNase I hypersensitive site (DHS) in intron 1 (185 + 10 kb) of the CFTR gene. Here we show that removal of the core element abolishes the activity of this DHS in transient transfection assays of reporter/enhancer gene constructs. We then compared expression from a 310 kb yeast artificial chromosome (YAC) that contains the entire CFTR gene with expression from the same YAC from which the DHS element had been deleted. Stable transfection of a human colon carcinoma cell line showed that transcription from the deleted YAC was reduced by approximately 60%. In transgenic mice, deletion of the intron 1 DHS had no effect on expression in the lung, but reduced expression in the intestine by approximately 60%. Thus, the regulatory element associated with the intron 1 DHS is tissue-specific and is required for normal CFTR expression levels in the intestinal epithelium in vivo.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Gene Expression Regulation , Intestinal Mucosa/metabolism , Introns , Regulatory Sequences, Nucleic Acid , Animals , Caco-2 Cells , Cell Line , Chromosomes, Artificial, Yeast , DNA-Binding Proteins/metabolism , Deoxyribonuclease I/metabolism , Humans , Mice , Mice, Inbred C57BL , Mice, Transgenic , Polymerase Chain Reaction , Tissue Distribution , Transcription, Genetic , Transfection
9.
Hum Mol Genet ; 10(10): 1007-18, 2001 May 01.
Article in English | MEDLINE | ID: mdl-11331611

ABSTRACT

Charcot-Marie-Tooth disease type 1A, a hereditary demyelinating neuropathy, is usually caused by overexpression of peripheral myelin protein 22 (PMP22) due to a genomic duplication. We have generated a transgenic mouse model in which mouse pmp22 overexpression can be regulated. In this mouse model, overexpression of pmp22 occurs specifically in Schwann cells of the peripheral nerve and is switched off when the mice are fed tetracycline. Overexpression of pmp22 throughout life (in the absence of tetracycline) causes demyelination. In contrast, myelination is nearly normal when pmp22 overexpression is switched off throughout life by feeding the mice tetracycline. When overexpression of pmp22 is switched off in adult mice, correction begins within 1 week and myelination is well advanced by 3 months (although the myelin sheaths are still thinner than normal), indicating that the Schwann cells are poised to start myelination. Upregulation of the gene in adult mice (which had previously had normal pmp22 expression) is followed by active demyelination within 1 week, which had plateaued by 8 weeks. This indicates that Schwann cells with mature myelin are sensitive to increased amounts of pmp22 such that they rapidly demyelinate. Thus, demyelination can largely be corrected within a few months, but the correction will be sensitive to subsequent upregulation of pmp22.


Subject(s)
Charcot-Marie-Tooth Disease/genetics , Demyelinating Diseases/genetics , Myelin Proteins/genetics , Myelin Sheath/pathology , Schwann Cells/cytology , Animals , Charcot-Marie-Tooth Disease/pathology , Demyelinating Diseases/pathology , Disease Models, Animal , Gene Expression Regulation , Humans , Mice , Mice, Transgenic , Neural Conduction , Phenotype , RNA, Messenger/metabolism , Regulatory Sequences, Nucleic Acid , Schwann Cells/metabolism , Tetracycline/pharmacology , Tetracycline Resistance/genetics
10.
Gene ; 266(1-2): 147-53, 2001 Mar 21.
Article in English | MEDLINE | ID: mdl-11290429

ABSTRACT

Bacterial artificial chromosomes (BACs) and P1 artificial chromosomes (PACs) are widely used to investigate the functions of genes and genomes in mammalian cells in vitro and in vivo. We have developed a series of vectors which can simply and efficiently be retrofitted onto BACs or PACs. These vectors carry a neoR gene for selection in cells in tissue culture, including ES cells, and also an EGFP gene driven by the strong CAG promoter for quick detection of the DNA in cells. All the plasmids are retrofitted using the loxP site and Cre recombinase and some carry the gamma origin of plasmid R6K which does not function in commonly used bacteria such as DH10B. Retrofitting of PACs and BACs carrying alphoid DNA was very efficient with almost no rearrangement of the highly repetitive alphoid DNA. Following transfer into HT1080 cells and mouse oocytes in tissue culture the DNA could easily be monitored by the EGFP fluorescence.


Subject(s)
Bacteriophage P1/genetics , Chromosomes, Artificial, Bacterial/genetics , Genetic Vectors/genetics , Animals , Cloning, Molecular , Drug Resistance/genetics , Embryo, Mammalian/cytology , Embryo, Mammalian/drug effects , Embryo, Mammalian/metabolism , Green Fluorescent Proteins , Humans , Luminescent Proteins/genetics , Male , Neomycin/pharmacology , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Transfection , Tumor Cells, Cultured/cytology , Tumor Cells, Cultured/drug effects , Tumor Cells, Cultured/metabolism
11.
BMC Genet ; 2: 2, 2001.
Article in English | MEDLINE | ID: mdl-11178108

ABSTRACT

BACKGROUND: Rab GTPases are regulators of intracellular membrane traffic. The Rab27 subfamily consists of Rab27a and Rab27b. Rab27a has been recently implicated in Griscelli Disease, a disease combining partial albinism with severe immunodeficiency. Rab27a plays a key role in the function of lysosomal-like organelles such as melanosomes in melanocytes and lytic granules in cytotoxic T lymphocytes. Little is known about Rab27b. RESULTS: The human RAB27B gene is organised in six exons, spanning about 69 kb in the chromosome 18q21.1 region. Exon 1 is non-coding and is separated from the others by 49 kb of DNA and exon 6 contains a long 3' untranslated sequence (6.4 kb). The mouse Rab27b cDNA shows 95% identity with the human cDNA at the protein level and maps to mouse chromosome 18. The mouse mRNA was detected in stomach, large intestine, spleen and eye by RT-PCR, and in heart, brain, spleen and kidney by Northern blot. Transient over-expression of EGF-Rab27b fusion protein in cultured melanocytes revealed that Rab27b is associated with melanosomes, as observed for EGF-Rab27a. CONCLUSIONS: Our results indicate that the Rab27 subfamily of Ras-like GTPases is highly conserved in mammals. There is high degree of conservation in sequence and gene structure between RAB27A and RAB27B genes. Exogenous expression of Rab27b in melanocytes results in melanosomal association as observed for Rab27a, suggesting the two Rab27 proteins are functional homologues. As with RAB27A in Griscelli Disease, RAB27B may be also associated with human disease mapping to chromosome 18.


Subject(s)
rab GTP-Binding Proteins/genetics , Amino Acid Sequence , Animals , Cell Line , Chromosome Mapping , Cloning, Molecular , Gene Components , Humans , Melanocytes/chemistry , Mice , Molecular Sequence Data , RNA, Messenger/biosynthesis , Sequence Alignment , Tissue Distribution , rab GTP-Binding Proteins/analysis , rab GTP-Binding Proteins/biosynthesis , rab27 GTP-Binding Proteins
12.
Genomics ; 68(2): 118-26, 2000 Sep 01.
Article in English | MEDLINE | ID: mdl-10964509

ABSTRACT

To facilitate the use of large-insert bacterial clones for functional analysis, we have constructed new bacterial artificial chromosome vectors, pPAC4 and pBACe4. These vectors contain two genetic elements that enable stable maintenance of the clones in mammalian cells: (1) The Epstein-Barr virus replicon, oriP, is included to ensure stable episomal propagation of the large insert clones upon transfection into mammalian cells. (2) The blasticidin deaminase gene is placed in a eukaryotic expression cassette to enable selection for the desired mammalian clones by using the nucleoside antibiotic blasticidin. Sequences important to select for loxP-specific genome targeting in mammalian chromosomes are also present. In addition, we demonstrate that the attTn7 sequence present on the vectors permits specific addition of selected features to the library clones. Unique sites have also been included in the vector to enable linearization of the large-insert clones, e. g., for optical mapping studies. The pPAC4 vector has been used to generate libraries from the human, mouse, and rat genomes. We believe that clones from these libraries would serve as an important reagent in functional experiments, including the identification or validation of candidate disease genes, by transferring a particular clone containing the relevant wildtype gene into mutant cells or transgenic or knock-out animals.


Subject(s)
DNA/genetics , Genetic Vectors/genetics , Animals , Bacteriophage P1/genetics , Binding Sites/genetics , COS Cells , Cell Line , Chromosomes, Bacterial/genetics , Cloning, Molecular , DNA Transposable Elements , DNA, Recombinant/genetics , Humans , Molecular Sequence Data , Plasmids/genetics , Transfection
13.
Hum Mol Genet ; 9(4): 617-29, 2000 Mar 01.
Article in English | MEDLINE | ID: mdl-10699185

ABSTRACT

Plasmids carrying the origin of plasmid replication ( oriP ) and expressing the EBNA-1 protein from the Epstein-Barr virus replicate and segregate in human cells and are thus potentially useful vectors for gene therapy. As very large circular molecules, up to 660 kb in size, can be maintained episomally using this system, it is possible to include intact human genes with all their long-range controlling elements which might give high levels of tissue-specific and controlled gene expression. We have shown previously that a 320 kb yeast artificial chromosome (YAC) carrying the intact human CFTR gene can complement the Cambridge null cystic fibrosis mice as a transgene. We have now modified this YAC to a circular molecule carrying both oriP and the EBNA-1 gene. We show that this oriP-EBNA1-YAC can be stably maintained as unrearranged episomes in mouse LA-9 cells, which do not express endogenous cftr, and in mouse CMT-93 cells, which do express endogenous cftr. The human CFTR gene is expressed in some of the cell lines, but the level of expression is very variable between cell lines and is not related to the copy number of the elements.


Subject(s)
Chromosomes, Artificial, Yeast/genetics , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Epstein-Barr Virus Nuclear Antigens/genetics , Gene Expression Regulation , Plasmids/genetics , Replication Origin/genetics , Alanine/genetics , Animals , Cell Line , Chromosomes/metabolism , Chromosomes, Artificial, Yeast/metabolism , Cystic Fibrosis Transmembrane Conductance Regulator/biosynthesis , Epstein-Barr Virus Nuclear Antigens/biosynthesis , Epstein-Barr Virus Nuclear Antigens/metabolism , Gene Dosage , Glycine/genetics , Humans , Mice , Plasmids/chemical synthesis , Plasmids/metabolism , Recombination, Genetic , Repetitive Sequences, Amino Acid , Transgenes , Tumor Cells, Cultured
14.
Gene ; 241(2): 275-85, 2000 Jan 11.
Article in English | MEDLINE | ID: mdl-10675040

ABSTRACT

The fission yeast Schizosaccharomyces pombe (Sch. pombe) has been proposed as a possible cloning host for both mammalian artificial chromosomes (MACs) and mammalian genomic libraries, due to the large size of its chromosomes and its similarity to higher eukaryotic cells. Here, it was investigated for its ability to form telomeres from human telomere sequence and to stably maintain long stretches of alphoid DNA. Using linear constructs terminating in the telomere repeat, T2AG3, human telomere DNA was shown to efficiently seed telomere formation in Sch. pombe. Much of the human telomeric sequence was removed on addition of Sch. pombe telomeric sequence, a process similar to that described in S. cerevisiae. To investigate the stability of alphoid DNA in fission yeast, bacterial artificial chromosomes (BACs) containing 130 and 173 kb of alphoid DNA were retrofitted with the Sch. pombe ars1 element and ura4+ marker using Cre-lox recombination. These alphoid BACs were found to be highly unstable in Sch. pombe deleting down to less than 40 kb, whilst control BACs of 96 and 202 kb, containing non-repetitive DNA, were unrearranged. Alphoid DNA has been shown to be sufficient for human centromere function, and this marked instability excludes Sch. pombe as a useful cloning host for mammalian artificial chromosomes. In addition, regions containing repetitive DNA from mammalian genomes may not be truly represented in libraries constructed in Sch. pombe.


Subject(s)
Cloning, Molecular/methods , DNA, Satellite , Schizosaccharomyces/genetics , Telomere , Viral Proteins , Base Sequence , DNA , Humans , Integrases , Molecular Sequence Data
15.
J Anat ; 195 ( Pt 3): 331-9, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10580849

ABSTRACT

Mutations in the gene for peripheral myelin protein 22 (PMP22) are associated with peripheral neuropathy in mice and humans. Although PMP22 is strongly expressed in peripheral nerves and is localised largely to the myelin sheath, a dual role has been suggested as 2 differentially expressed promoters have been found. In this study we compared the initial stages of postnatal development in transgenic mouse models which have, in addition to the murine pmp22 gene, 7 (C22) and 4 (C61) copies of the human PMP22 gene and in homozygous and heterozygous Trembler-J (TrJ) mice, which have a point mutation in the pmp22 gene. The number of axons that were singly ensheathed by Schwann cells was the same in all groups indicating that PMP22 does not function in the initial ensheathment and separation of axons. At both P4 and P12 all mutants had an increased proportion of fibres that were incompletely surrounded by Schwann cell cytoplasm indicating that this step is disrupted in PMP22 mutants. C22 and homozygous TrJ animals could be distinguished by differences in the Schwann cell morphology at the initiation of myelination. In homozygous TrJ animals the Schwann cell cytoplasm had failed to make a full turn around the axon whereas in the C22 strain most fibres had formed a mesaxon. It is concluded that PMP22 functions in the initiation of myelination and probably involves the ensheathment of the axon by the Schwann cell, and the extension of this cell along the axon. Abnormalities may result from a failure of differentiation but more probably from defective interactions between the axon and the Schwann cell.


Subject(s)
Myelin Proteins/physiology , Peripheral Nervous System Diseases/embryology , Sciatic Nerve/embryology , Animals , Axons/ultrastructure , Charcot-Marie-Tooth Disease/genetics , Cytoplasm/ultrastructure , Embryonic and Fetal Development , Mice , Mice, Neurologic Mutants , Mice, Transgenic , Microscopy, Electron , Myelin Proteins/genetics , Peripheral Nervous System Diseases/pathology , Point Mutation , Schwann Cells/ultrastructure , Sciatic Nerve/ultrastructure
16.
Eur J Biochem ; 266(2): 431-43, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10561583

ABSTRACT

The cystic fibrosis transmembrane conductance regulator gene (CFTR) shows a tightly regulated pattern of expression with spatial and temporal control. The regulatory elements achieving this appear to lie outside the basal promoter of the gene. We previously identified DNase I hypersensitive sites (DHSs) at -79.5 kb and -20.5 kb with respect to the CFTR translational start site which may contain important regulatory elements. We have now investigated further the DHS at -20.5 kb to evaluate its potential function in the regulation of CFTR expression. Finer mapping revealed that the DHS lies at -20.9 kb. Deletion of the DHS from a 310-kb yeast artificial chromosome (YAC) containing the human CFTR gene has shown that this site may be responsible for about 60% of wild-type levels of transcription from the YAC transgene when expressed in Caco2 cells. DNase I footprinting showed several regions of protection within the -20.9 kb region with nuclear extracts from Caco2 cells, but not with extracts from lymphoblastoid cells, which do not show the DHS. Matches to several transcription factor-binding sites were found, but supershift analysis with specific antibodies did not identify the transcription factors involved. Two purine/pyrimidine mirror repeat elements within the -20.9-kb DHS were shown not to adopt non-B-DNA conformations. Thus, we provide evidence for a role for the -20.9 kb DHS in the transcriptional regulation of the CFTR gene, although the mechanisms mediating this effect remain unclear.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Deoxyribonuclease I/chemistry , Amino Acid Motifs , Base Sequence , Binding Sites , Chromosomes, Artificial, Yeast , Cloning, Molecular , Cystic Fibrosis Transmembrane Conductance Regulator/chemistry , DNA, Superhelical/ultrastructure , Electrophoresis, Agar Gel , Exons , Gene Deletion , Gene Expression Regulation , Humans , Models, Genetic , Molecular Sequence Data , Nucleic Acid Conformation , Plasmids/metabolism , Protein Biosynthesis , Purines/chemistry , Pyrimidines/chemistry , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , Single-Strand Specific DNA and RNA Endonucleases/metabolism , Transcription, Genetic , Transgenes , Tumor Cells, Cultured
17.
Gene ; 239(1): 109-16, 1999 Oct 18.
Article in English | MEDLINE | ID: mdl-10571040

ABSTRACT

Choroideremia (CHM) is an X-linked retinal degenerative disease that results from mutations in Rab Escort Protein-1 (REP1). REP1 acts in the prenylation of Rab GTPases, regulators of intracellular protein trafficking. Rab27a is unique among Rabs in that it is selectively unprenylated in CHM cells, suggesting that the degenerative process in CHM may result from unprenylation and consequent loss-of-function of Rab27a. As a first step towards the analysis of the Rab27a protein in patients, we report here the characterization of the human RAB27A gene. The putative protein encoded by this gene shares 96% identity with the previously cloned rat homologue. The RAB27A gene comprises five coding exons and two non-coding exons, of which one is alternatively used, and spans approximately 65 kb of DNA. There are three alternative poly-A addition sites in the long 3' UTR and also six potential single-nucleotide polymorphisms. The gene is located on chromosome 15q15-21.1, as determined by fluorescent in situ hybridization, and between markers D15S209 and AFM321ZD5 by radiation hybrid mapping.


Subject(s)
rab GTP-Binding Proteins/genetics , 3' Untranslated Regions , Amino Acid Sequence , Base Sequence , Chromosome Banding , Chromosome Mapping , Chromosomes, Human, Pair 15/genetics , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/genetics , Exons , Genes/genetics , Humans , Hybrid Cells , In Situ Hybridization, Fluorescence , Introns , Molecular Sequence Data , Poly A , Restriction Mapping , Sequence Analysis, DNA , Tumor Cells, Cultured , rab27 GTP-Binding Proteins
18.
Nucleic Acids Res ; 27(18): 3736-44, 1999 Sep 15.
Article in English | MEDLINE | ID: mdl-10471744

ABSTRACT

One approach to the construction and propagation of a mammalian artificial chromosome is to build it up in Saccharomyces cerevisiae, using a yeast artificial chromosome (YAC) base. We have demonstrated that circular YACs carrying the Epstein-Barr virus origin of plasmid replication ( oriP ) are maintained as stable, episomal elements in human cells. We wished to determine whether this technology could be extended, to generate linear extrachromosomal elements. Here, we describe the generation of retrofitting constructs, which permit the addition of human telomeres and the oriP domain to YACs. The constructs contain 0.8 kb of human telomere sequence separated by a unique Not I site from 0.7 kb of Tetrahymena telomere sequence. These constructs seed telomere formation with approximately 40-60% efficiency in human 293-EBNA and HT1080 cells whether or not the Tetrahymena sequence is removed by Not I digestion. A detailed analysis demonstrates that YACs carrying the human telomere cassettes on both arms show instability of the telomere sequences in S.cerevisiae at a frequency of approximately 50%. Introduction of correctly retrofitted, linear oriP YACs into human 293-EBNA cells by lipofection resulted in the generation of circular extrachromosomal elements varying in size from 8 to 300 kb. However, no apparently linear YACs could be detected, suggesting that extrachromosomal maintenance of DNA with the oriP /EBNA-1 system is not compatible with linear molecules capped by telomeres.


Subject(s)
Chromosomes, Artificial, Yeast/genetics , Herpesvirus 4, Human/genetics , Mutagenesis, Insertional/genetics , Replication Origin/genetics , Saccharomyces cerevisiae/genetics , Telomere/genetics , Animals , Blotting, Southern , Cation Exchange Resins , Cell Line , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , DNA, Circular/genetics , DNA, Recombinant/genetics , DNA, Viral/genetics , Electrophoresis, Gel, Pulsed-Field , Genetic Markers/genetics , Genetic Vectors/genetics , Humans , Lipids , Mutagenesis, Insertional/methods , Recombination, Genetic/genetics , Tetrahymena/genetics , Transfection , Tumor Cells, Cultured
19.
Gene ; 236(1): 53-61, 1999 Aug 05.
Article in English | MEDLINE | ID: mdl-10433966

ABSTRACT

Machado-Joseph disease or spinocerebellar ataxia 3 (SCA3) is a progressive neurodegenerative disorder caused by pathological expansion of a trinucleotide repeat motif present within exon 4 of the MJD1 gene. Previous attempts to create a transgenic animal model have failed to produce a neurological deficit truly representative of the disease phenotype. This appears to be the result of inappropriate expression of the mutant protein in neuronal populations generally spared in the disease state. Introduction of a human disease gene in the context of a yeast artificial chromosome clone containing endogenous regulatory elements would enhance the potential for correct tissue/cell-specific expression at physiological levels. We report the introduction of expanded CAG repeat motifs into a 250kb yeast artificial chromosome clone spanning the MJD1 locus using two rounds of homologous recombination. Transformants exhibited both expansions and contractions of the motif with alleles ranging in size from 48 to 84 repeat units. The availability of these clones for modelling of the disease in transgenic animals should allow elucidation of the role of repeat length in the phenotypic spectrum of the disease.


Subject(s)
Chromosomes, Artificial, Yeast , Mutagenesis, Insertional , Nerve Tissue Proteins/genetics , Trinucleotide Repeat Expansion , Ataxin-3 , Chromosome Mapping , DNA Restriction Enzymes/metabolism , Genetic Markers , Humans , Machado-Joseph Disease/genetics , Models, Genetic , Nuclear Proteins , Phenotype , Recombination, Genetic , Repressor Proteins
20.
Mol Med ; 5(4): 211-23, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10448643

ABSTRACT

BACKGROUND: The cystic fibrosis transmembrane conductance regulator gene (CFTR) shows a complex pattern of expression. The regulatory elements conferring tissue-specific and temporal regulation are thought to lie mainly outside the promoter region. Previously, we identified DNase I hypersensitive sites (DHS) that may contain regulatory elements associated with the CFTR gene at -79.5 and at -20.5 kb with respect to the ATG and at 10 kb into the first intron. MATERIALS AND METHODS: In order to evaluate these regulatory elements in vivo we examined these DHS in a human CFTR gene that was introduced on a yeast artificial chromosome (YAC) into transgenic mice. The 310 kb human CFTR YAC was shown to restore the pheno-type of CF-null mice and so is likely to contain most of the regulatory elements required for tissue-specific expression of CFTR. RESULTS: We found that the YAC does not include the -79.5 kb region. The DHS at -20.5 kb is present in the chromatin of most tissues of the transgenic mice, supporting its non-tissue-specific nature. The DHS in the first intron is present in a more restricted set of tissues in the mice, although its presence does not show complete concordance with CFTR expression. The intron I DHS may be important for the higher levels of expression found in human pancreatic ducts and in lung submucosal glands. CONCLUSION: These data support the in vivo importance of these regulatory elements.


Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Regulatory Sequences, Nucleic Acid , Animals , Chromosomes, Artificial, Yeast , Cystic Fibrosis Transmembrane Conductance Regulator/biosynthesis , Deoxyribonuclease I/metabolism , Gene Expression , Genetic Complementation Test , Humans , Mice , Mice, Transgenic , Protein Binding , Restriction Mapping , Reverse Transcriptase Polymerase Chain Reaction , Species Specificity , Tissue Distribution
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