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1.
PLoS Biol ; 19(3): e3001161, 2021 03.
Article in English | MEDLINE | ID: mdl-33788834

ABSTRACT

Scientists routinely use images to display data. Readers often examine figures first; therefore, it is important that figures are accessible to a broad audience. Many resources discuss fraudulent image manipulation and technical specifications for image acquisition; however, data on the legibility and interpretability of images are scarce. We systematically examined these factors in non-blot images published in the top 15 journals in 3 fields; plant sciences, cell biology, and physiology (n = 580 papers). Common problems included missing scale bars, misplaced or poorly marked insets, images or labels that were not accessible to colorblind readers, and insufficient explanations of colors, labels, annotations, or the species and tissue or object depicted in the image. Papers that met all good practice criteria examined for all image-based figures were uncommon (physiology 16%, cell biology 12%, plant sciences 2%). We present detailed descriptions and visual examples to help scientists avoid common pitfalls when publishing images. Our recommendations address image magnification, scale information, insets, annotation, and color and may encourage discussion about quality standards for bioimage publishing.


Subject(s)
Pictorial Works as Topic/trends , Writing/standards , Biomedical Research , Communication , Humans , Periodicals as Topic , Publications/standards , Publishing/trends , Scholarly Communication
3.
Elife ; 92020 07 07.
Article in English | MEDLINE | ID: mdl-32633721

ABSTRACT

The eLife Early-Career Advisory Group (ECAG), an international group of early-career researchers committed to improving research culture, calls for radical changes at eLife and other journals to address racism in the scientific community and to make science more diverse and inclusive.


Subject(s)
Cultural Diversity , Gender Equity , Publishing/standards , Racism/prevention & control , Research Personnel/statistics & numerical data , Social Inclusion , Peer Review
4.
Elife ; 92020 03 27.
Article in English | MEDLINE | ID: mdl-32216872

ABSTRACT

The need to protect public health during the current COVID-19 pandemic has necessitated conference cancellations on an unprecedented scale. As the scientific community adapts to new working conditions, it is important to recognize that some of our actions may disproportionately affect early-career researchers and scientists from countries with limited research funding. We encourage all conference organizers, funders and institutions who are able to do so to consider how they can mitigate the unintended consequences of conference and travel cancellations and we provide seven recommendations for how this could be achieved. The proposed solutions may also offer long-term benefits for those who normally cannot attend conferences, and thus lead to a more equitable future for generations of researchers.


Subject(s)
Congresses as Topic/trends , Coronavirus Infections , Pandemics , Pneumonia, Viral , Research Personnel , Travel , Betacoronavirus , COVID-19 , Career Mobility , Congresses as Topic/economics , Coronavirus Infections/epidemiology , Coronavirus Infections/prevention & control , Editorial Policies , Humans , Internet , Interprofessional Relations , Pandemics/prevention & control , Pneumonia, Viral/epidemiology , Pneumonia, Viral/prevention & control , Public Health , Publishing , Research Support as Topic , SARS-CoV-2
5.
BMC Neurosci ; 17(1): 72, 2016 11 09.
Article in English | MEDLINE | ID: mdl-27829368

ABSTRACT

BACKGROUND: The AP-2 transcription factor APTF-1 is crucially required for developmentally controlled sleep behavior in Caenorhabditis elegans larvae. Its human ortholog, TFAP-2beta, causes Char disease and has also been linked to sleep disorders. These data suggest that AP-2 transcription factors may be highly conserved regulators of various types of sleep behavior. Here, we tested the idea that AP-2 controls adult sleep in Drosophila. RESULTS: Drosophila has one AP-2 ortholog called TfAP-2, which is essential for viability. To investigate its potential role in sleep behavior and neural development, we specifically downregulated TfAP-2 in the nervous system. We found that neuronal TfAP-2 knockdown almost completely abolished night sleep but did not affect day sleep. TfAP-2 insufficiency affected nervous system development. Conditional TfAP-2 knockdown in the adult also produced a modest sleep phenotype, suggesting that TfAP-2 acts both in larval as well as in differentiated neurons. CONCLUSIONS: Thus, our results show that AP-2 transcription factors are highly conserved regulators of development and sleep.


Subject(s)
Drosophila Proteins/metabolism , Sleep/physiology , Transcription Factor AP-2/metabolism , Animals , Brain/growth & development , Brain/metabolism , Brain/pathology , Drosophila Proteins/genetics , Drosophila melanogaster , Gene Knockdown Techniques , Immunohistochemistry , Male , Neurons/metabolism , Neurons/pathology , Photoperiod , Phylogeny , Real-Time Polymerase Chain Reaction , Transcription Factor AP-2/genetics , Video Recording
6.
Chronobiol Int ; 28(2): 163-9, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21231878

ABSTRACT

We assessed the effect of different day/night lengths on the pre-adult developmental time of two species of Camponotus ants that normally develop in dark underground nests. We assayed larval (egg-to-pupal formation), pupal (pupal formation-to-adult emergence), and pre-adult (egg-to-adult emergence) durations in these ants under three different light/dark (LD) cycles of 12:12 h, 10:14 h, and 14:10 h. We observed that the pre-adult development time of ants under these day lengths was significantly different. Although both species developed fastest under 12:12 h LD, when asymmetric LD cycles were compared, night-active species (Camponotus compressus) developed faster under short days (10:14 h) and day-active species (C. paria) developed faster under long days (14:10 h). This day/night-length-mediated difference in pre-adult developmental duration was mostly due to modulation of larval duration; however, in day-active species it was also via altered pupal duration. These results thus indicate that the two species of Camponotus ants respond differently to short and long days, suggesting that seasonal timers regulate pre-adult development time in tropical ant species living in dark underground nests.


Subject(s)
Ants/physiology , Circadian Rhythm/physiology , Larva/growth & development , Photoperiod , Pupa/growth & development , Animals , Biological Clocks/physiology , Metamorphosis, Biological/physiology , Seasons
7.
J Insect Physiol ; 56(11): 1611-6, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20570678

ABSTRACT

Circadian clocks provide adaptive advantage to their owners by timing their behavioural and physiological processes in accordance with the external environment. Here we report the results of our study aimed at investigating the effect of the interaction between circadian timing system and environmental light/dark (LD) cycles on pre-adult development time of two sympatric species of Componotus ants, the night active Componotus compressus, and the day active C. paria-both species develop in dark underground nests, under fairly constant conditions of humidity and temperature. We estimated pre-adult developmental durations in these ants under three different LD cycles (T20=10 h of light and 10 h of darkness, T24=12 h of light and 12 h of darkness, and T28=14 h of light and 14 h of darkness). We find that both species exhibit significantly faster pre-adult development under T24 compared to T20 and T28. Given that faster development in insects is considered as an adaptive strategy these results can be taken to suggest that Camponotus ants accrue greater fitness advantage under T24 compared to T20 and T28 LD cycles, possibly due to "circadian resonance" between circadian timing system and environmental LD cycle. Thus our study reveals that boreal species of ants could serve as a case for the study of adaptive significance of circadian organization.


Subject(s)
Ants/growth & development , Ants/genetics , Circadian Rhythm/physiology , Metamorphosis, Biological/physiology , Animals , Larva , Light , Photoperiod , Species Specificity
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