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1.
PNAS Nexus ; 3(9): pgae373, 2024 Sep.
Article in English | MEDLINE | ID: mdl-39351542

ABSTRACT

Agricultural activities are the major anthropogenic source of nitrous oxide ( N 2 O ), an important greenhouse gas and ozone-depleting substance. However, the role of forage conservation as a potential source of N 2 O has rarely been studied. We investigated N 2 O production from the simulated silage of the three major crops-maize, alfalfa, and sorghum-used for silage in the United States, which comprises over 90% of the total silage production. Our findings revealed that a substantial N 2 O could be generated, potentially placing forage conservation as the third largest N 2 O source in the agricultural sector. Notably, the application of chlorate as an additive significantly reduced N 2 O production, but neither acetylene nor intermittent exposure to oxygen showed any impact. Overall, the results highlight that denitrifiers, rather than nitrifiers, are responsible for N 2 O production from silage, which was confirmed by molecular analyses. Our study reveals a previously unexplored source of N 2 O and provides a crucial mechanistic understanding for effective mitigation strategies.

2.
Water Res ; 235: 119787, 2023 May 15.
Article in English | MEDLINE | ID: mdl-36917870

ABSTRACT

Bisphenol A (BPA) is a high production volume chemical with potential estrogenic effects susceptible to abiotic degradation by MnO2. BPA transformation products and reaction mechanisms with MnO2 have been investigated, but detailed process understanding of Mn(III)-mediated degradation has not been attained. Rapid consumption of BPA occurred in batch reaction vessels with 1 mM Mn(III) and 63.9 ± 0.7% of 1.76 ± 0.02 µmol BPA was degraded in 1 hour at circumneutral pH. BPA was consumed at 1.86 ± 0.09-fold higher rates in vessels with synthetic MnO2 comprising approximately 13 mol% surface-associated Mn(III) versus surface-Mn(III)-free MnO2, and 10-35% of BPA transformation could be attributed to Mn(III) during the initial 10-min reaction phase. High-resolution tandem mass spectrometry (HRMS/MS) analysis detected eight transformation intermediates in reactions with Mn(III), and quantum calculations proposed 14 BPA degradation products, nine of which had not been observed during MnO2-mediated BPA degradation, suggesting mechanistic differences between Mn(III)- versus MnO2-mediated BPA degradation. The findings demonstrate that both Mn(III) and Mn(IV) can effectively degrade BPA and indicate that surface-associated Mn(III) increases the reactivity of synthetic MnO2, offering opportunities for engineering more reactive oxidized Mn species for BPA removal.


Subject(s)
Manganese Compounds , Oxides , Oxidation-Reduction , Oxides/chemistry , Manganese Compounds/chemistry , Phenols/chemistry , Benzhydryl Compounds/chemistry
3.
J Microbiol Methods ; 206: 106677, 2023 03.
Article in English | MEDLINE | ID: mdl-36716930

ABSTRACT

Analysis of microbial communities in the epiphytic phyllosphere can be challenging, especially when applying sequencing-based techniques, owing to the interference of plant-derived biomolecules such as nucleic acids. A review of recent studies on the epiphytic microbiome revealed that both mechanical and enzymatic lysis methods are widely used. Here, we evaluated the effects of the two lysis methods on DNA extraction yield, purity, integrity, and microbial 16S rRNA gene copy number per ng of template genomic DNA under different extraction conditions. Furthermore, the effect on bacterial community composition, diversity, and reproducibility was examined using 16S rRNA gene amplicon sequencing. The enzymatic lysis method yielded one to two orders of magnitude more DNA, but the DNA quality was suboptimal. Conversely, the samples prepared using the mechanical method showed high DNA purity albeit lower yield. Unexpectedly, mechanical lysis showed a higher DNA integrity number (DIN) than enzymatic lysis. The 16S rRNA amplicon sequencing results demonstrated that the samples prepared via mechanical disruption exhibited reproducibly similar microbial community compositions regardless of the extraction conditions. In contrast, the enzymatic lysis method resulted in inconsistent taxonomic compositions under different extraction conditions. This study demonstrates that mechanical DNA disruption is more suitable for epiphytic phyllosphere samples than enzymatic disruption.


Subject(s)
Bacteria , DNA , Bacteria/genetics , DNA, Bacterial/genetics , DNA, Bacterial/analysis , Reproducibility of Results , RNA, Ribosomal, 16S/genetics
4.
Environ Sci Technol ; 55(19): 13014-13023, 2021 10 05.
Article in English | MEDLINE | ID: mdl-34559517

ABSTRACT

Bisphenol A (BPA), a high production volume chemical and potential endocrine disruptor, is found to be associated with sediments and soils due to its hydrophobicity (log KOW of 3.42). We used superfine powdered activated carbon (SPAC) with a particle size of 1.38 ± 0.03 µm as a BPA sorbent and assessed degradation of BPA by oxidized manganese (Mn) species. SPAC strongly sorbed BPA, and desorption required organic solvents. No degradation of adsorbed BPA (278.7 ± 0.6 mg BPA g-1 SPAC) was observed with synthetic, solid α-MnO2 with a particle size of 15.41 ± 1.35 µm; however, 89% mass reduction occurred following the addition of 0.5 mM soluble Mn(III). Small-angle neutron scattering data suggested that both adsorption and degradation of BPA occurred in SPAC pores. The findings demonstrate that Mn(III) mediates oxidative transformation of dissolved and adsorbed BPA, the latter observation challenging the paradigm that contaminant desorption and diffusion out of pore structures are required steps for degradation. Soluble Mn(III) is abundant near oxic-anoxic interfaces, and the observation that adsorbed BPA is susceptible to degradation has implications for predicting, and possibly managing, the fate and longevity of BPA in environmental systems.


Subject(s)
Manganese Compounds , Manganese , Adsorption , Benzhydryl Compounds , Oxidation-Reduction , Oxides , Phenols
5.
J Hazard Mater ; 417: 125987, 2021 09 05.
Article in English | MEDLINE | ID: mdl-34229371

ABSTRACT

Bisphenol A (BPA), a chemical of environmental concern, is recalcitrant under anoxic conditions, but is susceptible to oxidative degradation by manganese(IV)-oxide (MnO2). Microbial Mn(II)-oxidation generates MnO2-bio; however, BPA degradation in cultures of Mn(II)-oxidizing bacteria has not been explored. We assessed MnO2-bio-mediated BPA degradation using three Mn(II)-oxidizing bacteria, Roseobacter sp. AzwK-3b, Erythrobacter sp. SD-21, and Pseudomonas putida GB-1. In cultures of all three strains, enhanced BPA degradation was evident in the presence of Mn(II) compared to replicate incubations without Mn(II), suggesting MnO2-bio mediated BPA degradation. Increased Mn(II) concentrations up to 100 µM resulted in more MnO2-bio formation but the highest BPA degradation rates were observed with 10 µM Mn(II). Compared to abiotic BPA degradation with 10 µM synthetic MnO2, live cultures of strain GB-1 amended with 10 µM Mn(II) consumed 9-fold more BPA at about 5-fold higher rates. Growth of strain AzwK-3b was sensitive to BPA and the organism showed increased tolerance against BPA in the presence of Mn(II), suggesting MnO2-bio alleviated the inhibition by mediating BPA degradation. The findings demonstrate that Mn(II)-oxidizing bacteria contribute to BPA degradation but organism-specific differences exist, and for biologically-mediated-abiotic-degradation (BMAD), Mn-flux, rather than the absolute amount of MnO2-bio, is the key determinant for oxidation activity.


Subject(s)
Manganese Compounds , Manganese , Benzhydryl Compounds , Manganese/toxicity , Oxidation-Reduction , Oxides , Phenols
6.
Int J Syst Evol Microbiol ; 70(7): 4224-4232, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32553048

ABSTRACT

A Gram-stain-negative, long-rod-shaped and facultative aerobic bacterium, designated HB-1T, was isolated from a round hay bale at the Kansas State University Beef Stocker Unit. The results of phylogenetic analysis of 16S rRNA gene sequences indicated that strain HB-1T clustered within the genus Gemmobacter and its closest relatives were Gemmobacter aquaticus A1-9T (98.0 %), Gemmobacter lutimaris YJ-T1-11T (98.0 %), Gemmobacter fontiphilus JS43T (97.8 %), Gemmobacter aquatilis DSM 3857T (97.5 %) and Gemmobacter lanyuensis Orc-4T (96.9 %). Additional phylogenomic analysis also indicated that strain HB-1T belongs to the genus Gemmobacter. The draft genome of strain HB-1T had a total length of 4.23 Mbp and contained 4071 protein-coding genes. The average nucleotide identity values between the genomes of strain HB-1T and the three most-related type strains ranged from 77.5 to 78.1 %. The DNA G+C content of strain HB-1T was 63.7 mol%. The novel strain grew at 10-37 °C, pH 5-10 and with 0-2 % NaCl. Oxidase and catalase activities were positive. Cells were 0.3-0.4 µm wide, 3.0-7.0 µm long and usually found in pairs or chains of cells. The major respiratory quinone of strain HB-1T was Q-10 (90 %), with a minor amount of Q-9 (10 %). The major fatty acids were C18 : 1 ω7c (54.6 %) and C16 : 0 (18.2 %). On the basis of phenotypic, phylogenetic and chemotaxonomic data, strain HB-1T (=DSM 109828T=ATCC TSD-211T) is considered to represent a novel species of the genus Gemmobacter, for which the name Gemmobacter serpentinus sp. nov. is proposed.


Subject(s)
Animal Feed/microbiology , Phylogeny , Rhodobacteraceae/classification , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Kansas , RNA, Ribosomal, 16S/genetics , Rhodobacteraceae/isolation & purification , Sequence Analysis, DNA , Ubiquinone/analogs & derivatives , Ubiquinone/chemistry
7.
Environ Sci Technol ; 53(20): 11941-11948, 2019 Oct 15.
Article in English | MEDLINE | ID: mdl-31525867

ABSTRACT

Chlorofluorocarbons including 1,1,2-trichloro-1,2,2-trifluoroethane (CFC-113) often occur in groundwater plumes comingled with chlorinated solvents such as trichloroethene (TCE). We show that CFC-113 inhibits reductive dechlorination by Dehalococcoides mccartyi (Dhc) in a concentration-dependent manner, causing cis-1,2-dichloroethene (cis-DCE) stalls. Following a 17-day exposure of Dhc-containing consortium SDC-9 to 76 µM CFC-113, cis-DCE dechlorination activity did not recover after CFC-113 removal. River sediment microcosms demonstrated that CFC-113 was subject to microbial degradation under anoxic conditions, and chlorotrifluoroethene (CTFE) was observed as a transformation product. No degradation of CFC-113 was observed in killed controls and in incubations with reactive minerals including mackinawite, green rust, magnetite, and manganese dioxide. In vitro experiments with reduced corrinoid (i.e., vitamin B12) mediated reductive dechlorination of CFC-113 to CTFE and trifluoroethene (TFE) followed by reductive defluorination of TFE to cis-1,2-difluoroethene (cis-DFE) as an end product. This biomimetic degradation of CFC-113 to cis-DFE was also demonstrated in vivo using the corrinoid-producing homoacetogen Sporomusa ovata, suggesting the cometabolic microbial reductive dechlorination and reductive defluorination of CFC-113 to cis-DFE is feasible under anoxic in situ conditions. The CFC-113 degradation intermediates CTFE, TFE, and cis-DFE did not inhibit TCE dechlorination by Dhc, indicating that the initial reductive transformation step can overcome cis-DCE stalls.


Subject(s)
Chloroflexi , Trichloroethylene , Biodegradation, Environmental , Chlorofluorocarbons, Ethane , Ethylenes , Halogenation
8.
FEMS Microbiol Lett ; 365(19)2018 10 01.
Article in English | MEDLINE | ID: mdl-30184177

ABSTRACT

Cytochrome P450s have been shown to play a vital role in the xenobiotic detoxification system of Sclerotinia homoeocarpa, the causal agent of the turfgrass disease dollar spot. A previous study indicated that three CYP450s were validated to play a functional role in resistance against different fungicide classes including propiconazole and plant growth regulator, flurprimidol. In this study, we present these CYP450s possess the capability to modify the multi-site mode of action fungicide chlorothalonil. Chlorothalonil is an extensively used contact fungicide and has been shown to persist in soils. High Performance Liquid Chromatography (HPLC) indicated faster rates of chlorothalonil biotransformation by CYP561 and CYP65 overexpression strains when compared to the wild-type and CYP68 overexpression strain. Our GC-MS results show that the primary transformation intermediate found in soils, 4-hydroxy-2,5,6 trichloro-isophthalonitrile is produced by CYP450s' metabolism. These findings suggest fungal CYP450s can biotransform chlorothalonil for biodegradation or detoxification.


Subject(s)
Ascomycota/enzymology , Cytochrome P-450 Enzyme System/metabolism , Fungicides, Industrial/metabolism , Nitriles/metabolism , Biotransformation , Chromatography, High Pressure Liquid , Gas Chromatography-Mass Spectrometry , Xenobiotics/metabolism
9.
mBio ; 9(4)2018 07 17.
Article in English | MEDLINE | ID: mdl-30018104

ABSTRACT

Fungi are known to utilize transcriptional regulation of genes that encode efflux transporters to detoxify xenobiotics; however, to date it is unknown how fungi transcriptionally regulate and coordinate different phases of detoxification system (phase I, modification; phase II, conjugation; and phase III, secretion). Here we present evidence of an evolutionary convergence between the fungal and mammalian lineages, whereby xenobiotic detoxification genes (phase I coding for cytochrome P450 monooxygenases [CYP450s] and phase III coding for ATP-binding cassette [ABC] efflux transporters) are transcriptionally regulated by structurally unrelated proteins. Following next-generation RNA sequencing (RNA-seq) analyses of a filamentous fungus, Sclerotinia homoeocarpa, the causal agent of dollar spot on turfgrasses, a multidrug resistant (MDR) field strain was found to overexpress phase I and III genes, coding for CYP450s and ABC transporters for xenobiotic detoxification. Furthermore, there was confirmation of a gain-of-function mutation of the fungus-specific transcription factor S. homoeocarpa XDR1 (ShXDR1), which is responsible for constitutive and induced overexpression of the phase I and III genes, resulting in resistance to multiple classes of fungicidal chemicals. This fungal pathogen detoxifies xenobiotics through coordinated transcriptional control of CYP450s, biotransforming xenobiotics with different substrate specificities and ABC transporters, excreting a broad spectrum of xenobiotics or biotransformed metabolites. A Botrytis cinerea strain harboring the mutated ShXDR1 showed increased expression of phase I (BcCYP65) and III (BcatrD) genes, resulting in resistance to fungicides. This indicates the regulatory system is conserved in filamentous fungi. This molecular genetic mechanism for xenobiotic detoxification in fungi holds potential for facilitating discovery of new antifungal drugs and further studies of convergent and divergent evolution of xenobiotic detoxification in eukaryote lineages.IMPORTANCE Emerging multidrug resistance (MDR) in pathogenic filamentous fungi is a significant threat to human health and agricultural production. Understanding mechanisms of MDR is essential to combating fungal pathogens; however, there is still limited information on MDR mechanisms conferred by xenobiotic detoxification. Here, we report for the first time that overexpression of phase I drug-metabolizing monooxygenases (cytochrome P450s) and phase III ATP-binding cassette efflux transporters is regulated by a gain-of-function mutation in the fungus-specific transcription factor in the MDR strains of the filamentous plant-pathogenic fungus Sclerotinia homoeocarpa This study establishes a novel molecular mechanism of MDR through the xenobiotic detoxification pathway in filamentous fungi, which may facilitate the discovery of new antifungal drugs to control pathogenic fungi.


Subject(s)
ATP-Binding Cassette Transporters/genetics , Ascomycota/genetics , Cytochrome P-450 Enzyme System/genetics , Drug Resistance, Multiple, Fungal/genetics , Gene Expression Regulation, Fungal/genetics , Transcription Factors/genetics , Xenobiotics/metabolism , Antifungal Agents/metabolism , Antifungal Agents/pharmacology , Ascomycota/metabolism , Drug Resistance, Multiple, Fungal/drug effects , Fungal Proteins/genetics , Gene Expression Profiling , Gene Expression Regulation, Fungal/drug effects , Mutation , Plant Diseases/microbiology , Xenobiotics/pharmacology
10.
Environ Sci Technol ; 51(9): 4821-4830, 2017 May 02.
Article in English | MEDLINE | ID: mdl-28328216

ABSTRACT

Contaminant discharge from fractured bedrock formations remains a remediation challenge. We applied an integrated approach to assess the natural attenuation potential of sediment that forms the transition zone between upwelling groundwater from a chlorinated solvent-contaminated fractured bedrock aquifer and the receiving surface water. In situ measurements demonstrated that reductive dechlorination in the sediment attenuated chlorinated compounds before reaching the water column. Microcosms established with creek sediment or in situ incubated Bio-Sep beads degraded C1-C3 chlorinated solvents to less-chlorinated or innocuous products. Quantitative PCR and 16S rRNA gene amplicon sequencing revealed the abundance and spatial distribution of known dechlorinator biomarker genes within the creek sediment and demonstrated that multiple dechlorinator populations degrading chlorinated C1-C3 alkanes and alkenes co-inhabit the sediment. Phylogenetic classification of bacterial and archaeal sequences indicated a relatively uniform distribution over spatial (300 m horizontally) scale, but Dehalococcoides and Dehalobacter were more abundant in deeper sediment, where 5.7 ± 0.4 × 105 and 5.4 ± 0.9 × 106 16S rRNA gene copies per g of sediment, respectively, were measured. The microbiological and hydrogeological characterization demonstrated that microbial processes at the fractured bedrock-sediment interface were crucial for preventing contaminants reaching the water column, emphasizing the relevance of this critical zone environment for contaminant attenuation.


Subject(s)
RNA, Ribosomal, 16S/genetics , Water Pollutants, Chemical , Biodegradation, Environmental , Phylogeny , Solvents
11.
Environ Sci Technol ; 50(16): 8403-16, 2016 08 16.
Article in English | MEDLINE | ID: mdl-27401879

ABSTRACT

Bisphenol A (2,2-bis[4-hydroxyphenyl]propane, BPA), the monomer used to produce polycarbonate plastic and epoxy resins, is weakly estrogenic and therefore of environmental and human health interest. Due to the high production volumes and disposal of products made from BPA, polycarbonate plastic and epoxy resins, BPA has entered terrestrial and aquatic environments. In the presence of oxygen, diverse taxa of bacteria, fungi, algae and even higher plants metabolize BPA, but anaerobic microbial degradation has not been documented. Recent reports demonstrated that abiotic processes mediate BPA transformation and mineralization in the absence of oxygen, indicating that BPA is susceptible to degradation under anoxic conditions. This review summarizes biological and nonbiological processes that lead to BPA transformation and degradation, and identifies research needs to advance predictive understanding of the longevity of BPA and its transformation products in environmental systems.


Subject(s)
Benzhydryl Compounds/metabolism , Phenols/metabolism , Soil Pollutants/metabolism , Water Pollutants, Chemical/metabolism , Bacteria/metabolism , Biodegradation, Environmental
12.
J Microbiol Methods ; 126: 35-7, 2016 07.
Article in English | MEDLINE | ID: mdl-27179438

ABSTRACT

We demonstrate the utility of a simple and fast methanol extraction method that achieves similar bisphenols recovery efficiencies from microbial culture suspensions and sediment material than more laborious and costly extraction procedures. The methanol extraction method may have broad application for the rapid analysis of hydrophobic compounds in biodegradation studies.


Subject(s)
Benzhydryl Compounds/isolation & purification , Biomass , Escherichia coli/chemistry , Geologic Sediments/chemistry , Liquid-Liquid Extraction/methods , Phenols/isolation & purification , Solid Phase Extraction/methods , Adsorption , Culture Media/chemistry , Escherichia coli/growth & development , Hydrophobic and Hydrophilic Interactions , Methanol , Solvents , Suspensions/chemistry
13.
Environ Sci Technol ; 50(10): 5181-8, 2016 05 17.
Article in English | MEDLINE | ID: mdl-27116079

ABSTRACT

Despite advances in physicochemical remediation technologies, in situ bioremediation treatment based on Dehalococcoides mccartyi (Dhc) reductive dechlorination activity remains a cornerstone approach to remedy sites impacted with chlorinated ethenes. Selecting the best remedial strategy is challenging due to uncertainties and complexity associated with biological and geochemical factors influencing Dhc activity. Guidelines based on measurable biogeochemical parameters have been proposed, but contemporary efforts fall short of meaningfully integrating the available information. Extensive groundwater monitoring data sets have been collected for decades, but have not been systematically analyzed and used for developing tools to guide decision-making. In the present study, geochemical and microbial data sets collected from 35 wells at five contaminated sites were used to demonstrate that a data mining prediction model using the classification and regression tree (CART) algorithm can provide improved predictive understanding of a site's reductive dechlorination potential. The CART model successfully predicted the 3-month-ahead reductive dechlorination potential with 75.8% and 69.5% true positive rate (i.e., sensitivity) for the training set and the test set, respectively. The machine learning algorithm ranked parameters by relative importance for assessing in situ reductive dechlorination potential. The abundance of Dhc 16S rRNA genes, CH4, Fe(2+), NO3(-), NO2(-), and SO4(2-) concentrations, total organic carbon (TOC) amounts, and oxidation-reduction potential (ORP) displayed significant correlations (p < 0.01) with dechlorination potential, with NO3(-), NO2(-), and Fe(2+) concentrations exhibiting precedence over other parameters. Contrary to prior efforts, the power of data mining approaches lies in the ability to discern synergetic effects between multiple parameters that affect reductive dechlorination activity. Overall, these findings demonstrate that data mining techniques (e.g., machine learning algorithms) effectively utilize groundwater monitoring data to derive predictive understanding of contaminant degradation, and thus have great potential for improving decision-making tools. A major need for realizing the predictive capabilities of data mining approaches is a curated, open-access, up-to-date and comprehensive collection of biogeochemical groundwater monitoring data.


Subject(s)
Data Mining , RNA, Ribosomal, 16S/genetics , Biodegradation, Environmental , Chloroflexi/metabolism , Groundwater , Water Pollutants, Chemical/metabolism
15.
Environ Sci Technol ; 49(10): 6214-21, 2015 May 19.
Article in English | MEDLINE | ID: mdl-25919646

ABSTRACT

Bisphenol A (BPA), an environmental contaminant with weak estrogenic activity, resists microbial degradation under anoxic conditions but is susceptible to abiotic transformation by manganese dioxide (MnO2). BPA degradation followed pseudo-first-order kinetics with a rate constant of 0.96 (±0.03) min(-1) in the presence of 2 mM MnO2 (0.017% w/w) at pH 7.2. 4-hydroxycumyl alcohol (HCA) was the major transformation product, and, on a molar basis, up to 64% of the initial amount of BPA was recovered as HCA. MnO2 was also reactive toward HCA, albeit at 5-fold lower rates, and CO2 evolution (i.e., mineralization) occurred. In microcosms established with freshwater sediment, HCA was rapidly biodegraded under oxic, but not anoxic conditions. With a measured octanol-water partition coefficient (Log K(ow)) of 0.76 and an aqueous solubility of 2.65 g L(-1), HCA is more mobile in saturated media than BPA (Log K(ow) = 2.76; aqueous solubility = 0.31 g L(-1)), and therefore more likely to encounter oxic zones and undergo aerobic biodegradation. These findings corroborate that BPA is not inert under anoxic conditions and suggest that MnO2-mediated coupled abiotic-biotic processes may be relevant for controlling the fate and longevity of BPA in sediments and aquifers.


Subject(s)
Alcohols/chemistry , Benzhydryl Compounds/chemistry , Manganese Compounds/chemistry , Oxides/chemistry , Phenols/chemistry , Biodegradation, Environmental , Biotransformation , Buffers , Fresh Water , Hydrogen-Ion Concentration , Kinetics , Microbiota , Minerals/chemistry
16.
Chemosphere ; 117: 521-6, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25268077

ABSTRACT

4-Methylphenol (4-MP), a putative bisphenol A (BPA) degradation intermediate, was detected at concentrations reaching 2.1 mg L(-1) in anoxic microcosms containing 10 mg L(-1) BPA and 5 g of freshwater sediment material collected from four geographically distinct locations and amended with nitrate, nitrite, ferric iron, or bicarbonate as electron acceptors. 4-MP accumulation was transient, and 4-MP degradation was observed under all redox conditions tested. 4-MP was not detected in microcosms not amended with BPA. Unexpectedly, incubations with (13)C-labeled BPA failed to produce (13)C-labeled 4-MP suggesting that 4-MP was not derived from BPA. The detection of 4-MP in live microcosms amended with lactate, but not containing BPA corroborated that BPA was not the source of 4-MP. These findings demonstrate that the transient formation of 4-MP as a possible BPA degradation intermediate must be interpreted cautiously, as microbial activity in streambed microcosms may generate 4-MP from sediment-associated organic material.


Subject(s)
Benzhydryl Compounds/metabolism , Cresols/metabolism , Geologic Sediments/analysis , Phenols/metabolism , Water Pollutants, Chemical/metabolism , Anaerobiosis , Benzhydryl Compounds/analysis , Biodegradation, Environmental , Chromatography, High Pressure Liquid , Cresols/analysis , Environmental Monitoring , Fresh Water/analysis , Gas Chromatography-Mass Spectrometry , Phenols/analysis , Water Pollutants, Chemical/analysis
17.
Environ Sci Technol ; 48(22): 13181-7, 2014 Nov 18.
Article in English | MEDLINE | ID: mdl-25329364

ABSTRACT

The hydrofluoroolefin 2,3,3,3-tetrafluoropropene (HFO-1234yf) has been introduced to replace 1,1,1,2-tetrafluoroethane (HFC-134a) as refrigerant in mobile, including vehicle, air conditioning systems because of its lower global warming potential. HFO-1234yf is volatile at ambient temperatures; however, high production volumes and widespread handling are expected to release this fluorocarbon into terrestrial and aquatic environments, including groundwater. Laboratory experiments explored HFO-1234yf degradation by (i) microbial processes under oxic and anoxic conditions, (ii) abiotic processes mediated by reactive mineral phases and zerovalent iron (Fe(0), ZVI), and (iii) cobalamin-catalyzed biomimetic transformation. These investigations demonstrated that HFO-1234yf was recalcitrant to microbial (co)metabolism and no transformation was observed in incubations with ZVI, makinawite (FeS), sulfate green rust (GR(SO4)), magnetite (Fe(3)O(4)), and manganese oxide (MnO2). Sequential reductive defluorination of HFO-1234yf to 3,3,3-trifluoropropene and 3,3-dichloropropene with concomitant stoichiometric release of fluoride occurred in incubations with reduced cobalamins (e.g., vitamin B12) indicating that biomolecules can transform HFO-1234yf at circumneutral pH and at ambient temperature. Taken together, these findings suggest that HFO-1234yf recalcitrance in aquifers should be expected; however, HFO-1234yf is not inert and a biomolecule may mediate reductive transformation in low redox environments, albeit at low rates.


Subject(s)
Environmental Pollutants/analysis , Fluorocarbons/analysis , Refrigeration , Aerobiosis , Anaerobiosis , Biodegradation, Environmental , Halogenation , Iron/chemistry , Methane/analysis , Minerals/chemistry , Tetrachloroethylene/analysis , Trichloroethylene/analysis , Vitamin B 12/analysis
18.
PLoS One ; 9(1): e87062, 2014.
Article in English | MEDLINE | ID: mdl-24489834

ABSTRACT

Impaired ethanol metabolism can lead to various alcohol-related health problems. Key enzymes in ethanol metabolism are alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH); however, neuroendocrine pathways that regulate the activities of these enzymes are largely unexplored. Here we identified a neuroendocrine system involving Corazonin (Crz) neuropeptide and its receptor (CrzR) as important physiological regulators of ethanol metabolism in Drosophila. Crz-cell deficient (Crz-CD) flies displayed significantly delayed recovery from ethanol-induced sedation that we refer to as hangover-like phenotype. Newly generated mutant lacking Crz Receptor (CrzR(01) ) and CrzR-knockdown flies showed even more severe hangover-like phenotype, which is causally associated with fast accumulation of acetaldehyde in the CrzR(01) mutant following ethanol exposure. Higher levels of acetaldehyde are likely due to 30% reduced ALDH activity in the mutants. Moreover, increased ADH activity was found in the CrzR(01) mutant, but not in the Crz-CD flies. Quantitative RT-PCR revealed transcriptional upregulation of Adh gene in the CrzR(01) . Transgenic inhibition of cyclic AMP-dependent protein kinase (PKA) also results in significantly increased ADH activity and Adh mRNA levels, indicating PKA-dependent transcriptional regulation of Adh by CrzR. Furthermore, inhibition of PKA or cAMP response element binding protein (CREB) in CrzR cells leads to comparable hangover-like phenotype to the CrzR(01) mutant. These findings suggest that CrzR-associated signaling pathway is critical for ethanol detoxification via Crz-dependent regulation of ALDH activity and Crz-independent transcriptional regulation of ADH. Our study provides new insights into the neuroendocrine-associated ethanol-related behavior and metabolism.


Subject(s)
Drosophila Proteins/metabolism , Drosophila melanogaster/metabolism , Ethanol/metabolism , Neurons/metabolism , Neuropeptides/metabolism , Receptors, Neuropeptide/metabolism , Acetaldehyde/metabolism , Alcohol Dehydrogenase/genetics , Alcohol Dehydrogenase/metabolism , Aldehyde Dehydrogenase/metabolism , Alleles , Animals , Cyclic AMP-Dependent Protein Kinases/metabolism , Drosophila melanogaster/drug effects , Drosophila melanogaster/enzymology , Ethanol/pharmacology , Genes, Reporter , Male , Mutation/genetics , Neurons/drug effects , Phenotype , RNA, Messenger/genetics , RNA, Messenger/metabolism , Transcription, Genetic
19.
J Microbiol Methods ; 95(3): 366-7, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24140574

ABSTRACT

The ferrozine assay is a widely used colorimetric method for determining soluble iron concentrations. We provide evidence for a heretofore unrecognized interference of ferric ions (Fe(3+)) on ferrous iron (Fe(2+)) measurements performed in the dark. Fe(3+) concentrations affected the absorbance measurements, which linearly increased with incubation time.


Subject(s)
Chemistry Techniques, Analytical , Colorimetry/methods , Ferric Compounds/metabolism , Ferrous Compounds/analysis , Ferrozine/metabolism , Iron/analysis , Darkness , Diagnostic Errors , Ions/analysis , Time Factors
20.
J Air Waste Manag Assoc ; 63(3): 300-9, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23556240

ABSTRACT

UNLABELLED: Landfills are among the major sources of anthropogenic methane (CH4) estimated to reach 40 x 10(9) kg per year worldwide by 2015 (IPCC, 2007). A 2 1/2-year field experiment was conducted at a closed landfill in western Michigan where methanotrophs, methane-consuming bacteria, were stimulated by nutrient addition to the soil without significantly increasing biogenic nitrous oxide (N2O) production. The effects of the nitrogen amendments (KNO3 and NH4Cl), phenylacetylene (a selective inhibitor of nitrifying bacteria that contribute to N2O production), and a canopy (to reduce direct water infiltration) on the vertical soil gas profiles of CH4, CO2, and O2 were measured in the top meter of the soil. Methane and nitrous oxide fluxes were calculated from the corresponding soil gas concentration gradients with respect to depth and a Millington-Quirk diffusivity coefficient in soil derived empirically from soil porosity, water content, and diffusivity coefficients in air from the literature. Methane flux estimates were as high as 218.4 g m(-2) day(-1) in the fall and 12.8 g/m(-2) day(-1) in the summer. During the spring and summer CH4 fluxes were reduced by more than half by adding KNO3 and NH4Cl into the soil as compared to control plots, while N2O fluxes increased substantially. The concurrent addition of phenylacetylene to the amendment decreased peak N2O production by half and the rate of peak methane oxidation by about one-third. The seasonal average methane and N2O flux data were extrapolated to estimate the reduction of CH4 and N2O fluxes into the atmosphere by nitrogen and inhibitor addition to the cover soils. The results suggest that such additions coupled with soil moisture management may provide a potential strategy to significantly reduce greenhouse gas emissions from landfills. IMPLICATIONS: The results of a 2 1/2-year study of effects of nutrient stimulation on methane oxidation in landfill cover soils demonstrates that nutrient addition does decrease methane emissions. The work further underscores the control which soil moisture exerts on methane oxidation. Water management is critical to the success of methane oxidation strategies.


Subject(s)
Methane/metabolism , Soil Microbiology , Biodegradation, Environmental , Gases/analysis , Greenhouse Effect , Methane/analysis , Oxidation-Reduction , Soil/analysis , Waste Management
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