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1.
Microb Ecol ; 42(2): 126-135, 2001 Aug.
Article in English | MEDLINE | ID: mdl-12024276

ABSTRACT

To study the responses of forests to global change, model ecosystems consisting of beech and spruce trees were maintained in open top chambers for 4 years under four conditions, namely with normal and elevated CO2 and with low and high nitrogen input, each replicated four times. Each open top chamber (height 3 m, diameter 3 m, soil depth 1.5 m) contained two separate soil compartments containing nutrient-poor siliceous and nutrient-rich calcareous soil. Here, we focus on the fine roots and the soil microbial community in these model ecosystems. At the time of planting, the fine roots were cut back according to forestry practice, and the newly formed roots were colonized by the indigenous soil microflora. After 4 years, the total biomass of fine roots, when averaged over all treatments, was almost the same in each of the two soil types; it was highest in the top 100 mm of soil (60%) and decreased sharply in deeper soil layers. Fungal biomass associated with the fine roots, consisting mainly of ectomycorrhizal fungi, was estimated using the ergosterol content as a marker. It was much higher in fine roots in the siliceous than in the calcareous soil, indicating considerably enhanced ectomycorrhiza formation in the nutrient-poor siliceous soil. Elevated atmospheric CO2 stimulated fine root production by ca. 85% and 43% in the top 100 mm of calcareous and siliceous soils respectively. Increased nitrogen input caused a slightly reduced production of fine root biomass in the calcareous soil but increased it by 33% in the siliceous soil. Marker substances for microorganisms were analyzed in the root-free soil. The amounts of carbon released by fumigation/extraction (a general marker for microbial biomass) and chitin (a marker for fungal biomass) were significantly higher in the top layer of the siliceous than of the calcareous soil, but they did not respond significantly to the treatments with elevated CO2 or the nitrogen fertilizer. The total concentration of the phospholipid fatty acids (PLFAs) and the number of the PLFAs did not differ between the two soil types. However, four of the eight most abundant PLFAs differed significantly between the two soil types. Principal component analysis revealed clearly separated clusters for the two soil types. Although analysis did not reveal any significant changes in response to the treatments, the concentration of the PLFA typical for ectomycorrhizal fungi was significantly higher under conditions of elevated CO2 in the nutrient-rich calcareous soil.

2.
Nucleic Acids Res ; 9(18): 4639-53, 1981 Sep 25.
Article in English | MEDLINE | ID: mdl-6458018

ABSTRACT

We have determined 3,400 base pairs of DNA sequence from the phage gamma genome which starts to the right of PL and runs to the left into the gene bet. The sequence thus includes the genes, N, ral, Ea10, cIII, kil and gam, as well as the transcription terminators TL1 and TL2. One surprising feature of the sequence is the presence in the region expected to be occupied by ral of a long open reading frame that, if it is expressed, would have to be transcribed from left to right, or counter to transcription from PL.


Subject(s)
Bacteriophage lambda/genetics , DNA, Viral , Genes, Viral , Base Composition , Base Sequence , Nucleic Acid Conformation , Transcription, Genetic
4.
Gene ; 9(3-4): 205-12, 1980 May.
Article in English | MEDLINE | ID: mdl-6248427

ABSTRACT

The restriction enzyme BglI recognizes the DNA sequence: (Formula: see text) and cleaves it in the position shown by the arrows to leave 3' single-stranded protrusions three bases long.


Subject(s)
Bacillus/enzymology , DNA Restriction Enzymes/metabolism , DNA, Bacterial/metabolism , Plasmids , Base Sequence , Electrophoresis, Polyacrylamide Gel , Escherichia coli/genetics , Substrate Specificity
5.
Mol Gen Genet ; 180(2): 369-76, 1980.
Article in English | MEDLINE | ID: mdl-6450873

ABSTRACT

RNA polymerase binds very tightly at a site called Brex in the lambda immunity region, to the left of the rex gene and about 600 nucleotides to the right of PL. The complex formed is resistant to 1 M NaCl in the absence of nucleotide triphosphate. While in vitro little or no transcription is observed from Brex, in vivo, when inserted in a plasmid vector which allows detection of its activity, it acts as an efficient promoter. We have mapped the site protected by RNA polymerase against DNase and determined its sequence which is abnormal compared that of an average promoter.


Subject(s)
Bacteriophage lambda/genetics , DNA, Viral/metabolism , DNA-Directed RNA Polymerases/metabolism , Operon , RNA Polymerase I/metabolism , Base Sequence , Chromosome Mapping , Cloning, Molecular , Escherichia coli/genetics , Plasmids , Transcription, Genetic
7.
Nature ; 262(5570): 665-9, 1976 Aug 19.
Article in English | MEDLINE | ID: mdl-958438

ABSTRACT

The DNA region containing the Or operator, Pr and Prm promoters and their transcription initiations is sequenced. By binding to Or, repressor turns off Pr, turns on Prm and at higher concentrations turns off Prm, regulating its own synthesis. Prm mRNA is unique in beginning immediately with the initiation of translation, without a preceding leader sequence.


Subject(s)
Coliphages/metabolism , Genes, Regulator , Genes , RNA, Messenger/biosynthesis , Transcription, Genetic , Viral Proteins/biosynthesis , Base Sequence , Codon , DNA, Viral/analysis , Peptide Chain Initiation, Translational , RNA, Messenger/analysis , RNA, Viral/analysis , RNA, Viral/biosynthesis
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