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1.
Comp Immunol Microbiol Infect Dis ; 109: 102184, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38691874

ABSTRACT

BACKGROUND: Toxoplasma gondii is an apicomplexan protozoan parasite that infects one-third of the population of the world, including humans, animals, birds, and other vertebrates. The present investigation is the first molecular attempt in the Malakand Division of Pakistan to determine the epidemiology and phylogenetic study of Toxoplasma gondii infecting small ruminants. METHODOLOGY: A total of (N = 450) blood samples of sheep were randomly collected during the study period (December 2020 to November 2021), and DNA detection was done using PCR by amplifying ITS-1 genes. SPSS.20 and MEGA-11 software were used for statistical significance and phylogenetic analysis. RESULTS: The overall prevalence of T. gondii infection among sheep was 14.44 % (65/450). A high infection rate was found in more than five-year-olds at 18.33 % (11/60). Sequencing and BLAST analysis of PCR-positive samples confirmed the presence of T. gondii. Randomly, three isolates were sequenced and submitted to GenBank under accession numbers (PP028089-PP028091), respectively. The BLAST analysis of the obtained sequences based on the ITS-1 gene showed 99 % similarities with reported genotypes found in goats of Malakand, Pakistan (PP028089) and dogs of Brazil (MF766454). The study concludes that T. gondii is notably prevalent among the sheep population in the region, emphasizing the significant role of risk factors in disease transmission across animals and potentially to humans. Further research, zoonotic potential analysis, and targeted control measures are warranted to address and manage this parasitic infection effectively.


Subject(s)
DNA, Protozoan , Phylogeny , Sheep Diseases , Toxoplasma , Toxoplasmosis, Animal , Animals , Toxoplasma/genetics , Toxoplasma/isolation & purification , Toxoplasma/classification , Pakistan/epidemiology , Toxoplasmosis, Animal/epidemiology , Toxoplasmosis, Animal/parasitology , Sheep , Sheep Diseases/epidemiology , Sheep Diseases/parasitology , Prevalence , DNA, Protozoan/genetics , Genotype , Polymerase Chain Reaction
2.
Environ Monit Assess ; 196(3): 241, 2024 Feb 07.
Article in English | MEDLINE | ID: mdl-38324063

ABSTRACT

Phytochemicals are broadly acknowledged for their health-promoting effects owing to the fact of their capacity to counteract free radicals (e.g., superoxide anion radical, hydroxyl radical, hydroperoxyl radical, singlet oxygen, hypochlorite, and nitric oxide) and shield against oxidative stress induced by environmental factors. This study aimed to investigate the relationship between altitude, morphology, soil parameters, in vitro antioxidant potential and phytochemical composition of Phlomis cashmeriana collected from four different locations of Kashmir Himalaya characterized by diverse habitats and elevations. Various factors, such as extraction method, solvent polarity, and habitat conditions, can impact the quantity and efficacy of phytochemicals in plants. The aim of current study was to analyze phytochemical composition and antioxidant activity of P. cashmeriana, an important medicinal plant found in the Kashmir Himalaya region. The antioxidant activity was accessed using several assays and the plant populations were selected based on their diverse habitat features and altitudes. HR-LCMS was conducted for both below-ground and above-ground parts. Some important compounds such as, catechin, vinainsenoside, acutilobin, and kaempferol were reported for the first time from P. cashmeriana. Results showed that methanol was the most efficient solvent for extracting phytochemicals. During the current study, it was also found that the below-ground parts exhibited superior antioxidant activity compared to the above-ground parts. Notably, Site IV demonstrated the highest antioxidant potential; a positive correlation between altitude and antioxidant activity was also found. In conclusion, present research identified specific elite populations having highest antioxidant potential and are well-suited for large-scale cultivation of P. cashmeriana.


Subject(s)
Antioxidants , Phlomis , Himalayas , Environmental Monitoring , Phytochemicals , Solvents
3.
Int J Biol Macromol ; 259(Pt 1): 129105, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38176508

ABSTRACT

Microbial exopolysaccharides (EPS) are high molecular weight polymeric substances with great diversity and variety of applications in the food and pharma industry. In this study, we report the extraction of an EPS from Enterococcus hirae OL616073 strain originally isolated from Indian fermented food and its purification by ion exchange and size exclusion chromatography for physical-functional analyses. The EPS showed two prominent fractions (EPS F1 and EPS F2) with molecular mass 7.7 × 104 and 6.5 × 104 Da respectively by gel permeation chromatography. These fractions were further characterized by FTIR, HPTLC, GC-MS, and NMR as a homopolysaccharide of glucose linked with α-(1 â†’ 6) and α-(1 â†’ 3) glycosidic linkages. The porous, spongy, granular morphology of EPS was observed under scanning electron microscopy. EPS has revealed strong physico-functional properties like water solubility index (76.75 %), water contact angle (65.74°), water activity (0.35), hygroscopicity (3.05 %), water holding capacity (296.19 %), oil holding capacity (379.91 %), foaming capacity (19.58 %), and emulsifying activity (EA1-72.22 %). Rheological analysis showed that aqueous solution of EPS exhibited a non-Newtonian fluid behavior and shear-thinning characteristics. Overall, EPS exhibits techno functional properties with potential applications as a functional biopolymer in food and pharma industry.


Subject(s)
Enterococcus hirae , Glucans , Glucans/chemistry , Solubility , Molecular Weight , Water/chemistry , Polysaccharides, Bacterial/chemistry
4.
Prim Care Diabetes ; 18(2): 224-229, 2024 04.
Article in English | MEDLINE | ID: mdl-38245384

ABSTRACT

BACKGROUND: Acanthosis nigricans (AN) is a skin condition characterized by hyperpigmentation and thickening, often found in individuals with insulin resistance. Despite this well-established association, the potential link between AN and hepatic fibrosis in people with type 2 diabetes (T2D) has yet to be thoroughly explored. METHODOLOGY: We recruited a total of 300 people with T2D, half of whom had AN (n, 150), and the other half without AN (n, 150). We evaluated body composition, biochemistry, and hepatic fat analysis (using the controlled attenuation parameter, CAP), as well as assessments of hepatic stiffness (using the kilopascal, kPa) using Fibroscan. We used multivariable regression analysis to find independent predictors of AN and their relationship to hepatic fibrosis. Furthermore, we developed a prediction equation and AUC for hepatic fibrosis. RESULTS: Upon comparison between AN vs. NAN group, following were significatly higher; weight, BMI, hepatic transaminases, liver span, CAP, and kPa. After adjusting for age, weight, body mass index, diabetes duration, and specific anti-hyperglycaemic drugs (gliclazide, DPP-4 inhibitors, pioglitazone, and Glucagon-like peptide-1 receptor agonists), adjusted OR for AN were, liver span, 1.78 (95% CI: 0.91-3.49, p = 0.09), CAP, 7.55 (95% CI: 0.93-61.1, p = 0.05), and kPa, 2.47 (95% CI: 1.50-4.06, p = 0.001). A ROC analysis of predictive score for hepatic fibrosis showed optimal sensitivity and specificity at a score cut-off of 25.2 (sensitivity 62%, specificity 63%), with an AUC of 0.6452 (95% CI: 0.61235-0.76420). CONCLUSION: Acanthosis nigricans has the potential to be used as an easy-to-identify clinical marker for risk of hepatic fat and fibrosis in Asian Indians with T2D, allowing for early detection and management strategies.


Subject(s)
Acanthosis Nigricans , Diabetes Mellitus, Type 2 , Insulin Resistance , Humans , Diabetes Mellitus, Type 2/complications , Diabetes Mellitus, Type 2/diagnosis , Diabetes Mellitus, Type 2/drug therapy , Acanthosis Nigricans/diagnosis , Acanthosis Nigricans/epidemiology , Acanthosis Nigricans/etiology , Liver Cirrhosis/diagnosis
5.
Plant Physiol Biochem ; 203: 108076, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37832366

ABSTRACT

The MADS-box transcription factor APETELA1 (AP1) is crucially important for reproductive developmental processes. The function of AP1 and the classic LFY-AP1 interaction in woody plants are not widely known. Here, the OfAP1-a gene from the continuously flowering plant Osmanthus fragrans 'Sijigui' was characterized, and its roles in regulating flowering time, petal number robustness and floral organ identity were determined using overexpression in Arabidopsis thaliana and Nicotiana tabacum. The expression of OfAP1-a was significantly induced by low ambient temperature and was upregulated with the floral transition process. Ectopic expression OfAP1-a revealed its classic function in flowering and flower ABC models. The expression of OfAP1-a is inhibited by LEAFY (OfLFY) through direct promoter binding, as confirmed by yeast one-hybrid and dual luciferase assays. Arabidopsis plants overexpressing OfAP1-a exhibited accelerated flowering and altered floral organ identities. Moreover, OfAP1-a-overexpressing plants displayed variable petal numbers. Likewise, the overexpression of OfLFY in Arabidopsis and Nicotiana altered petal number robustness and inflorescence architecture, partially by regulating native AP1 in transformed plants. Furthermore, we performed RNA-seq analysis of transgenic Nicotiana plants. DEGs were identified by transcriptome analysis, and we found that the expression of several floral homeotic genes was altered in both OfAP1-a and OfLFY-overexpressing transgenic lines. Our results suggest that OfAP1-a may play important roles during floral transition and development in response to ambient temperature. OfAP1-a functions as a petal number modulator and may directly activate a subset of flowers to regulate floral organ formation. OfAP1-a and OfLFY mutually regulate the expression of each other and coregulate genes that might be involved in these phenotypes related to flowering. The results provide valuable data for understanding the function of the LFY-AP1 module in the reproductive process and shaping floral structures in woody plants.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Arabidopsis/metabolism , Temperature , Transcription Factors/genetics , Arabidopsis Proteins/genetics , Phenotype , Flowers/metabolism , Plants, Genetically Modified/genetics , Gene Expression Regulation, Plant , MADS Domain Proteins/genetics , MADS Domain Proteins/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism
6.
Environ Sci Pollut Res Int ; 30(47): 103463-103479, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37700125

ABSTRACT

Glacier mass balance is inextricably linked to annual meteorological conditions and is a key indicator for assessing the ice reserves of a glacier. As a result, a number of studies have estimated glacier mass balance using different methods. Here, we have used the improved accumulation area-ratio (IAAR) method to study the mass balance of the Nehnar glacier from 2000 to 2020. This study also aims to study the spatiotemporal behavior and other dynamics of the glacier. Results have shown that the glacier has continuously lost its ice reserves throughout the studied period though at a lower rate since 2010. Its annual specific mass balance has changed from - 50.10 ± 3 cm w.e in 2000 to - 59.46 ± 3 cm w.e. in 2020. The equilibrium line altitude (ELA) of the glacier rose by 90 m and has shifted from 4260 masl in 2000 to 4350 masl in 2020. The glacier has shrunk from an area of 1.64 km2 in 2000 to 1.38 km2 in 2020 losing nearly 16% of its area. The study highlights the need for continued monitoring of glacier mass balance to better understand and predict the effects of climate change. These findings have important implications for the future of glacier retreat and water reserves of the Jhelum basin.


Subject(s)
Altitude , Ice Cover , Temperature , Water , Climate Change
7.
Clin Nutr ESPEN ; 57: 305-310, 2023 10.
Article in English | MEDLINE | ID: mdl-37739673

ABSTRACT

BACKGROUND: Sodium-glucose cotransporter-2 inhibitors (SGLT2i) have been shown to decrease hepatic transaminases, steatosis, and in some studies, hepatic fibrosis. However, the safety and efficacy of SGLT2i has not been tested in patients who have moderate to severe hepatic fibrosis. METHODS: In a retrospective study of sixty patients with moderate to severe hepatic fibrosis (kPa estimated by Fibroscan > 10), SGLT2i were prescribed on top of other oral anti-hyperglycemic medications. The safety and efficacy of SGLT2i were evaluated. Using the Fibroscan, CAP scores (decibel/meter), and liver stiffness measurement (LSM) (kPa, kilopascals) were examined before and after treatment. RESULTS: The mean age of the T2DM patients was 54.7 ± 10.3 years, and the mean duration of T2DM was 8.3 ± 7.1 years. SGLT2i were given from 3 to 36 months. After treatment, a decrease in glycated hemoglobin (HbA1c), and hepatic transaminases (SGOT and SGPT) was recorded. Upon follow up, CAP and kPa scores decreased significantly. Importantly, no adverse drug reaction, such as balanoposthitis, vulvovaginitis, urosepsis, and postural drop in blood pressure, were reported in any patient. CONCLUSION: In this retrospective cohort study, patient with T2DM and moderate to severe hepatic fibrosis, use of SGLT2i is safe with respect to common adverse effects & may have contributed to improved hepatic profile.


Subject(s)
Diabetes Mellitus, Type 2 , Drug-Related Side Effects and Adverse Reactions , Sodium-Glucose Transporter 2 Inhibitors , Adult , Aged , Female , Humans , Middle Aged , Diabetes Mellitus, Type 2/complications , Diabetes Mellitus, Type 2/drug therapy , Glucose , Liver Cirrhosis/complications , Liver Cirrhosis/drug therapy , Retrospective Studies , Sodium , Sodium-Glucose Transporter 2 Inhibitors/therapeutic use , Transaminases
8.
Chem Commun (Camb) ; 59(69): 10448-10451, 2023 Aug 24.
Article in English | MEDLINE | ID: mdl-37555476

ABSTRACT

We have developed a synthesis of 1-3 and 1-1 disaccharides from 2-benzoyl glycal and anomeric thiol and/or hydroxy sugar acceptors under mild conditions at room temperature. The regio and stereo-selectivity of the newly formed inter-glycosidic linkages are dependent on the nature of the glycal donor (D or L) and anomeric acceptor.

9.
Chem Commun (Camb) ; 59(59): 9090-9093, 2023 Jul 20.
Article in English | MEDLINE | ID: mdl-37403569

ABSTRACT

A facile synthesis of C1-C2 interlinked disaccharides is achieved from readily available iodo-glycals and unsubstituted glycals. Ester-protected donors reacted with ether-protected acceptors under Pd-Ag catalysis to access C-disaccharides bearing C-3 vinyl ether, which upon ring opening by Lewis acid furnished pi-extended conjugated orthogonally protected chiral ketones. Benzyl deprotection and reduction of the double bonds resulted in a fully saturated disaccharide stable toward acid hydrolysis.

10.
J Org Chem ; 88(13): 8300-8309, 2023 Jul 07.
Article in English | MEDLINE | ID: mdl-37315232

ABSTRACT

A simple method for the iodination of unsaturated sugars to form sugar vinyl iodides was developed under oxidant-free conditions using NaH/DMF/iodine as a reagent system at ambient temperature. 2-Iodoglycals bearing ester, ether, silicon, and acetonide protection were synthesized in good to excellent yield. 3-Vinyl iodides derived from 1,2:5,6-diacetonide glucofuranose were transformed to C-3 enofuranose and bicyclic 3,4-pyran-fused furanose via Pd-catalyzed C-3 carbonylation and intramolecular Heck reaction, respectively, as the key step.


Subject(s)
Iodides , Iodine , Carbohydrates , Esters
12.
Neural Comput Appl ; : 1-22, 2023 Mar 24.
Article in English | MEDLINE | ID: mdl-37362569

ABSTRACT

Digital data security has become an exigent area of research due to a huge amount of data availability at present time. Some of the fields like medical imaging and medical data sharing over communication platforms require high security against counterfeit access, manipulation and other processing operations. It is essential because the changed/manipulated data may lead to erroneous judgment by medical experts and can negatively influence the human's heath. This work offers a blind and robust medical image watermarking framework using deep neural network to provide effective security solutions for medical images. During watermarking, the region of interest (ROI) data of the original image is preserved by employing the LZW (Lampel-Ziv-Welch) compression algorithm. Subsequently the robust watermark is inserted into the original image using IWT (integer wavelet transform) based embedding approach. Next, the SHA-256 algorithm-based hash keys are generated for ROI and RONI (region of non-interest) regions. The fragile watermark is then prepared by ROI recovery data and the hash keys. Further, the LSB replacement-based insertion mechanism is utilized to embed the fragile watermark into RONI embedding region of robust watermarked image. A deep neural network-based framework is used to perform robust watermark extraction for efficient results with less computational time. Simulation results verify that the scheme has significant imperceptibility, efficient robust watermark extraction, correct authentication and completely reversible nature for ROI recovery. The relative investigation with existing schemes confirms the dominance of the proposed work over already existing work.

13.
Plant Physiol ; 193(1): 448-465, 2023 08 31.
Article in English | MEDLINE | ID: mdl-37217835

ABSTRACT

Bud dormancy is crucial for winter survival and is characterized by the inability of the bud meristem to respond to growth-promotive signals before the chilling requirement (CR) is met. However, our understanding of the genetic mechanism regulating CR and bud dormancy remains limited. This study identified PpDAM6 (DORMANCY-ASSOCIATED MADS-box) as a key gene for CR using a genome-wide association study analysis based on structural variations in 345 peach (Prunus persica (L.) Batsch) accessions. The function of PpDAM6 in CR regulation was demonstrated by transiently silencing the gene in peach buds and stably overexpressing the gene in transgenic apple (Malus × domestica) plants. The results showed an evolutionarily conserved function of PpDAM6 in regulating bud dormancy release, followed by vegetative growth and flowering, in peach and apple. The 30-bp deletion in the PpDAM6 promoter was substantially associated with reducing PpDAM6 expression in low-CR accessions. A PCR marker based on the 30-bp indel was developed to distinguish peach plants with non-low and low CR. Modification of the H3K27me3 marker at the PpDAM6 locus showed no apparent change across the dormancy process in low- and non-low- CR cultivars. Additionally, H3K27me3 modification occurred earlier in low-CR cultivars on a genome-wide scale. PpDAM6 could mediate cell-cell communication by inducing the expression of the downstream genes PpNCED1 (9-cis-epoxycarotenoid dioxygenase 1), encoding a key enzyme for ABA biosynthesis, and CALS (CALLOSE SYNTHASE), encoding callose synthase. We shed light on a gene regulatory network formed by PpDAM6-containing complexes that mediate CR underlying dormancy and bud break in peach. A better understanding of the genetic basis for natural variations of CR can help breeders develop cultivars with different CR for growing in different geographical regions.


Subject(s)
Malus , Prunus persica , Prunus , Prunus persica/genetics , Prunus persica/metabolism , Prunus/genetics , Prunus/metabolism , Histones/metabolism , Genome-Wide Association Study , Malus/genetics , Gene Expression Regulation, Plant , Plant Dormancy/genetics
14.
Plant Sci ; 333: 111735, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37230192

ABSTRACT

Fruit maturity is an important agronomic trait of fruit crops. Although in previous studies, several molecular markers are developed for the trait, the knowledge about its candidate genes is particularly limited. In this study, a total of 357 peach accessions were re-sequenced to obtain 949,638 SNPs. Combing with 3-year fruit maturity dates, a genome-wide association analysis was performed, and 5, 8, and 9 association loci were identified. To screen the candidate genes for those year-stable loci on chromosomes 4 and 5, two maturity date mutants were used for transcriptome sequencing. Gene expression analysis indicated that Prupe.4G186800 and Prupe.4G187100 on chromosome 4 were essential to fruit ripening in peaches. However, the expression analysis of different tissues showed that the first gene has no tissue-specific character, but transgenic studies showed that the latter is more likely to be a key candidate gene than the first for the maturity date in peach. The yeast two-hybrid assay showed that the proteins encoded by the two genes interacted and then regulated fruit ripening. Moreover, the previously identified 9 bp insertion in Prupe.4G186800 may affect their interaction ability. This research is of great significance for understanding the molecular mechanism of peach fruit ripening and developing practical molecular markers in a breeding program.


Subject(s)
Prunus persica , Prunus persica/genetics , Genome-Wide Association Study , Fruit/genetics , Plant Breeding , Polymorphism, Single Nucleotide
15.
Environ Monit Assess ; 195(5): 623, 2023 Apr 28.
Article in English | MEDLINE | ID: mdl-37115430

ABSTRACT

Climate change is one of the primary causes of species redistribution and biodiversity loss, especially for threatened and endemic important plant species. Therefore, it is vital to comprehend "how" and "where" priority medicinal and aromatic plants (MAPs) might be effectively used to address conservation-related issues under rapid climate change. In the present study, an ensemble modelling approach was used to investigate the present and future distribution patterns of Aquilegia fragrans Benth. under climate change in the entire spectrum of Himalayan biodiversity hotspot. The results of the current study revealed that, under current climatic conditions, the northwest states of India (Jammu and Kashmir, Himachal Pradesh and the northern part of Uttarakhand), the eastern and southern parts of Pakistan Himalaya have highly suitable climatic conditions for the growth of A. fragrans. The ensemble model exhibited high forecast accuracy, with temperature seasonality and precipitation seasonality as the main climatic variables responsible for the distribution of the A. fragrans in the biodiversity hotspot. Furthermore, the study predicted that future climate change scenarios will diminish habitat suitability for the species by -46.9% under RCP4.5 2050 and -55.0% under RCP4.5 2070. Likewise, under RCP8.5, the habitat suitability will decrease by -51.7% in 2050 and -94.3% in 2070. The current study also revealed that the western Himalayan area will show the most habitat loss. Some currently unsuitable regions, such as the northern Himalayan regions of Pakistan, will become more suitable under climate change scenarios. Hopefully, the current approach may provide a robust technique and showcases a model with learnings for predicting cultivation hotspots and developing scientifically sound conservation plans for this endangered medicinal plant in the Himalayan biodiversity hotspot.


Subject(s)
Aquilegia , Climate Change , Environmental Monitoring , Ecosystem , Biodiversity
16.
Microorganisms ; 11(3)2023 Mar 09.
Article in English | MEDLINE | ID: mdl-36985280

ABSTRACT

Coleus barbatus is a medicinal herb belonging to Lamiaceae. It is the only living organism known to produce forskolin, which is a labdane diterpene and is reported to activate adenylate cyclase. Microbes associated with plants play an important role in maintaining plant health. Recently, the targeted application of beneficial plant-associated microbes and their combinations in abiotic and biotic stress tolerance has gained momentum. In this work, we carried out the rhizosphere metagenome sequencing of C. barbatus at different developmental stages to understand how rhizosphere microflora are affected by and affect the metabolite content in plants. We found that the Kaistobacter genus was abundantly present in the rhizosphere of C. barbatus and its accumulation pattern appears to correlate with the quantities of forskolin in the roots at different developmental stages. Members of the Phoma genus, known for several pathogenic species, were in lower numbers in the C. barbatus rhizosphere in comparison with C. blumei. To our knowledge, this is the first metagenomic study of the rhizospheric microbiome of C. barbatus, which may help to explore and exploit the culturable and non-culturable microbial diversity present in the rhizosphere.

17.
Article in English | MEDLINE | ID: mdl-36768019

ABSTRACT

Urbanization has adverse environmental effects, such as rising surface temperatures. This study analyzes the relationship between the urban heat island (UHI) intensity and Tianjin city's land cover characteristics. The land use cover change (LUCC) effects on the green areas and the land surface temperature (LST) were also studied. The land cover characteristics were divided into five categories: a built-up area, an agricultural area, a bare area, a forest, and water. The LST was calculated using the thermal bands of spatial images taken from 2005 to 2020. The increase in the built-up area was mainly caused by the agricultural area decreasing by 11.90%. The average land surface temperature of the study area increased from 23.50 to 36.51 °C, and the region moved to a high temperature that the built-up area's temperature increased by 1.5%. Still, the increase in vegetation cover was negative. From 2020 to 2050, the land surface temperature is expected to increase by 9.5 °C. The high-temperature areas moved into an aerial distribution, and the direction of urbanization determined their path. Urban heat island mitigation is best achieved through forests and water, and managers of urban areas should avoid developing bare land since they may suffer from degradation. The increase in the land surface temperature caused by the land cover change proves that the site is becoming more urbanized. The findings of this study provide valuable information on the various aspects of urbanization in Tianjin and other regions. In addition, future research should look into the public health issues associated with rapid urbanization.


Subject(s)
Hot Temperature , Urbanization , Cities , Search Engine , Environmental Monitoring/methods , Temperature , China
18.
Saudi J Kidney Dis Transpl ; 34(6): 570-575, 2023 Nov 01.
Article in English | MEDLINE | ID: mdl-38725207

ABSTRACT

Patients with end-stage renal disease (ESRD) are at an increased risk of hepatitis C virus (HCV) infection. This study evaluated the prevalence of HCV infection in patients with ESRD on maintenance hemodialysis (MHD) and studied the effectiveness of sofosbuvir-velpatasvir and sofosbuvir-daclatasvir regimens in these patients. This study included patients with ESRD on MHD between January 2019 and December 2021 who were screened for HCV serology status. HCV-positive patients received sofosbuvir-velpatasvir or sofosbuvir-daclatasvir. Efficacy was assessed by the sustained virological response (SVR), and safety assessments included monitoring adverse events and laboratory parameters. Out of 1330 patients, 188 patients (14.1%) were positive for anti-HCV, with Genotype 1 being the most common genotype. Of these, 106 patients were included. The majority were males (61.3%), and the mean age was 48.4 years. Hypertension (45.3%) was the most common cause of renal failure, followed by diabetes (31.1%). Most patients (63.2%) were positive for HCV in the first 2 years of their dialysis treatment. Out of 106 patients, only 54 had received blood transfusions. Ninety-four (88.7%) patients received sofosbuvir-velpatasvir, whereas 12 (11.3%) received sofosbuvir-daclatasvir. SVR at 12 and 24 weeks after stopping treatment was seen in all (100%) patients. Asthenia and fatigue were the most common adverse events (11.2%). No patients reported on-treatment virologic failure or discontinuation of treatment because of adverse events. The prevalence of HCV infection in this population was 14.1%, and treatment of HCV infection using sofosbuvir-velpatasvir or sofosbuvir-daclatasvir regimens was well tolerated and effective.


Subject(s)
Antiviral Agents , Carbamates , Drug Combinations , Heterocyclic Compounds, 4 or More Rings , Imidazoles , Kidney Failure, Chronic , Pyrrolidines , Renal Dialysis , Sofosbuvir , Valine , Humans , Male , Female , Middle Aged , Sofosbuvir/therapeutic use , Imidazoles/therapeutic use , Imidazoles/administration & dosage , Kidney Failure, Chronic/therapy , Kidney Failure, Chronic/complications , Carbamates/therapeutic use , Valine/analogs & derivatives , Valine/therapeutic use , Pyrrolidines/therapeutic use , Antiviral Agents/therapeutic use , Antiviral Agents/adverse effects , Heterocyclic Compounds, 4 or More Rings/therapeutic use , Heterocyclic Compounds, 4 or More Rings/adverse effects , Adult , Prevalence , Treatment Outcome , Hepatitis C/drug therapy , Hepatitis C/diagnosis , Hepatitis C/epidemiology , Aged , Hepacivirus/genetics , Hepacivirus/drug effects , Sustained Virologic Response , Saudi Arabia/epidemiology , Hepatitis C, Chronic/drug therapy , Hepatitis C, Chronic/diagnosis , Hepatitis C, Chronic/complications , Hepatitis C, Chronic/virology
19.
Environ Monit Assess ; 195(1): 214, 2022 Dec 20.
Article in English | MEDLINE | ID: mdl-36538137

ABSTRACT

In the current era of the anthropocene, climate change is one of the main determinants of species redistribution and biodiversity loss. Worryingly, the situation is alarming for endemic and medicinally important plant species with a narrow distributional range. Therefore, it is pivotal to inspect the influence of accelerated climate change on medicinally important threatened and endemic plant species. Using an ensemble approach, the current study aims at modelling the present distribution and predicting the future potential distribution coupled with the threat assessment of Swertia petiolata-a medicinally important endemic plant species in the Himalayan biodiversity hotspot. Our study revealed that under current climatic scenarios, the suitable habitats for the species occur across the western Himalayan region which includes the north-western Indian states (Jammu and Kashmir, Himachal Pradesh, and southern Uttarakhand), northern Pakistan, and north-western Nepal. Also, temperature seasonality (BIO4) and precipitation seasonality (BIO15) are the most significant bioclimatic variables determining the distribution of S. petiolata. Furthermore, the study projected a reduction in the suitable habitats for the species under future changing climatic scenarios with a reduction ranging from - 40.298% under RCP4.5 2050 to - 83.421% under RCP8.5 2070. Most of the habitat reduction will occur in the western Himalayan region. In contrast, some of the currently unsuitable Himalayan regions like northern Uttarakhand will show increasing suitability under climate change scenarios. The current study also revealed that S. petiolata is classified as Near Threatened (NT) following the IUCN criterion B. Hopefully, the present study will provide a robust tool for predicting the cultivation hotspots and devising scientifically effective conservation strategies for this medicinally important plant species in the Himalaya and similar environments elsewhere in the world.


Subject(s)
Climate Change , Plants, Medicinal , Swertia , Biodiversity , Ecosystem , Environmental Monitoring
20.
Front Genet ; 13: 1033288, 2022.
Article in English | MEDLINE | ID: mdl-36338979

ABSTRACT

Salicylic acid (SA) is a well-studied phenolic plant hormone that plays an important role in plant defense against the hemi-biothrophic and biothrophic pathogens and depends on the living cells of host for the successful infection. In this study, a pathogenesis test was performed between Vitis davidii and V. vinifera cultivars against grape white rot disease (Coniella diplodiella). V. davidii was found to be resistant against this disease. SA contents were found to be higher in the resistant grape cultivar after different time points. RNA-seq analysis was conducted on susceptible grapevine cultivars after 12, 24, and 48 h of SA application with the hypothesis that SA may induce defense genes in susceptible cultivars. A total of 511 differentially expressed genes (DEGs) were identified from the RNA-seq data, including some important genes, VvWRKY1/2, VvNPR1, VvTGA2, and VvPR1, for the SA defense pathway. DEGs related to phytohormone signal transduction and flavonoid biosynthetic pathways were also upregulated. The quantitative real-time PCR (qRT-PCR) results of the significantly expressed transcripts were found to be consistent with the transcriptome data, with a high correlation between the two analyses. The pathogenesis-related gene 1 (VvPR1), which is an important marker gene for plant defense, was selected for further promoter analysis. The promoter sequence showed that it contains some important cis-elements (W-box, LS7, as-1, and TCA-element) to recruit the transcription factors VvWRKY, VvNPR1, and VvTGA2 to express the VvPR1 gene in response to SA treatment. Furthermore, the VvPR1 promoter was serially deleted into different fragments (-1,837, -1,443, -1,119, -864, -558, -436, and -192 ) bp and constructed vectors with the GUS reporter gene. Deletion analysis revealed that the VvPR1 promoter between -1837 bp to -558 bp induced significant GUS expression with respect to the control. On the basis of these results, the -558 bp region was assumed to be an important part of the VvPR1 promoter, and this region contained the important cis-elements related to SA, such as TCA-element (-1,472 bp), LS7 (-1,428 bp), and as-1 (-520 bp), that recruit the TFs and induce the expression of the VvPR1 gene. This study expanded the available information regarding SA-induced defense in susceptible grapes and recognized the molecular mechanisms through which this defense might be mediated.

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