Total Internal Reflection Raman Spectra of Alamethicin Interacting with Supported Lipid Bilayers at a Silica/Water Interface.

We report total internal reflection (TIR)-Raman spectroscopy to study intermolecular interactions between membrane-binding peptides and lipid bilayer membranes. The method was applied to alamethicin (ALM), a model peptide for channel proteins, interacting with 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) bilayer membranes at a silica/water interface. After a dimethyl sulfoxide (DMSO) solution of ALM was added into the water subphase of the DPPC/DPPC bilayer, Raman signals in the CH stretching region increased in intensity reflecting the appearance of the Raman bands due to ALM and DMSO. To identify ALM-dependent spectral changes, we removed DPPC and DMSO contributions from the Raman spectra. We first subtracted the spectrum of the DPPC bilayer from those after the addition of the ALM solution. The contribution of DMSO was then removed by subtracting a DMSO spectrum from the resultant spectra. The DMSO spectrum was obtained in a similar way from a control experiment where DMSO alone was added into the subphase. With the use of this double difference approach, the ALM-dependent changes were successfully obtained. Experiments with DPPC bilayers with deuterated acyl chains revealed that most of the spectral change observed after the addition of ALM was due to the vibrational bands of ALM, not originated from ALM-induced conformational changes of the lipid bilayers.

Direct Observation and Quantitative Measurement of OH Radical Desorption During the Ultraviolet Photolysis of Liquid Nonanoic Acid.

Ultraviolet (UV) photolysis of fatty acid surfactants─which cover the surfaces of atmospheric liquid aerosols and are found in the oceans─such as nonanoic acid (NA) has recently been suggested as a source of hydroxyl (OH) radicals in the troposphere. We used laser-induced fluorescence to directly observe OH radicals desorbed from the surface of neat liquid NA as a primary photoproduct following 213 nm irradiation. The upper limit of photoreaction cross section for the OH radical desorption was estimated to be 9.0(4.1) × 10-22 cm2, which is only 1.2 ± 0.8% of the photoreaction cross section established for the photolysis of gas-phase acetic acid monomers. Vibrational sum-frequency generation spectroscopy for liquid NA revealed the hydrogen-bonded, cyclic, dimer structure of the NA molecules at the liquid surface. This dimerization can inhibit the formation of OH radicals and lead the present low photochemical reactivity of liquid NA.

Time-Resolved Infrared Spectroscopy with Multivariate Analysis on Photoinduced Proton Transfer in Aromatic Urea-Acetate Anion Complexes.

1-Anthracen-2-yl-3-phenylurea (2PUA) is an aromatic urea compound, which forms a hydrogen-bonded complex with an acetate anion (AcO-), 2PUA-AcO- complex. We investigated the photoinduced reaction of the 2PUA-AcO- complex in dimethyl sulfoxide (DMSO) by nanosecond time-resolved infrared (TR-IR) spectroscopy. TR-IR spectra obtained after the photoexcitation of 2PUA with the equal concentration of AcO- were consistently explained by a photoinduced proton transfer model. The spectral and temporal profiles of the TR-IR spectra largely depended on concentration conditions of 2PUA and AcO-. Under the condition where excessive amounts of AcO- existed, the TR-IR spectra contained an unexpected signal whose amplitude was related to the concentration of free AcO- in the solution. Using singular value decomposition analysis of the concentration-dependent TR-IR spectra, we extracted the spectral component that reflects the photoinduced reaction of the 2PUA-AcO- complex. The extracted spectrum resembled the TR-IR spectrum obtained under the equal concentration condition, indicating that the same proton transfer occurs during the photoinduced reaction of the 2PUA-AcO- complex irrespective of the concentration conditions. Comparing the steady-state and transient IR spectra of the 2PUA with AcO- in DMSO with density functional theory calculations suggests that both 2PUA-AcO- complex and tautomer species interact with solvent DMSO molecules in their electronic ground states to a large extent.

Visualization of the Orientation of Amphipathic Peptides at the Air-Water Interface by X-Ray Reflectometry.

X-ray reflectivity measurements were performed for the leucine and lysine-based LKα14 peptide designed to adopt an α-helical conformation at the air-water interface. The electron density profiles along the surface normal were calculated from the atomic coordinates predicted by an electronic structure program to fit the X-ray reflectivity curve. At the concentration of the monolayer formation, the long axis of the α-helix adsorbed parallel to the water surface, and the central part was revealed to be submerged in water. On the other hand, at 100 times higher than the surface area density of the monolayer formation, the double layer is formed in which the long axis of the α-helix is parallel to the water surface and only the peptide in the second layer is submerged in water.

Quadrupole Contribution of C═O Vibrational Band in Sum Frequency Generation Spectra of Organic Carbonates.

Sum Frequency Generation (SFG) is usually governed by surface-selective signals of dipole origin, but it can also contain some bulk signals of quadrupole origin. In this work, we examined the dipole and quadrupole contributions in the C═O stretching band of organic carbonate liquids with collaboration of heterodyne SFG measurement and theoretical analysis. As a result, we found that these spectra are substantially affected by the quadrupole contribution of the bulk, which resolved the discrepancy between the experimental and computational SFG spectra.

Hydrogen Bonds and Molecular Orientations of Supramolecular Structure between Barbituric Acid and Melamine Derivative at the Air/Water Interface Revealed by Heterodyne-Detected Vibrational Sum Frequency Generation Spectroscopy.

We studied the supramolecular structure between barbituric acid (pyrimidine-2,4,6(1H,3H,5H)-trione, BA) and an amphiphilic melamine derivative at the air/water interface by heterodyne-detected vibrational sum frequency generation (HD-VSFG) spectroscopy. HD-VSFG measurements in situ showed a positive broad band from 2300 to 2950 cm-1. By comparing the experimental results with ab initio molecular dynamics (AIMD) simulations, we assigned the broad band to the NH stretching modes of BA strongly hydrogen-bonded to the melamine derivative. In addition, we report in situ HD-VSFG spectra of the interfacial supramolecular structure in the CO stretching region. Two CO stretching bands were identified. On the basis of the signs of the C=O bands, we uniquely determined the orientation of BA. The strong hydrogen bonds and the molecular orientations are direct evidence for the supramolecular structure based on complementary hydrogen bonds at the air/water interface.

Photo-Induced Ring-Opening Reaction of Flav-3-en-2-ol Monitored by Time-Resolved Infrared Spectroscopy.

Photo-induced ring-opening reaction from flav-3-en-2-ol to 2-hydroxychalcone has been studied by time-resolved infrared (TR-IR) spectroscopy and quantum chemical calculations. A vibrational band due to the C═O stretching modes for intermediate species, enol forms of 2-hydroxychalcone in the electronic ground state, was observed at 1632 cm-1 in the TR-IR spectra after photoexcitation of flav-3-en-2-ol. We also found that the C═O stretching modes of the keto forms of 2-hydroxychalcone at 1664 cm-1 appeared immediately after photoexcitation and increased in intensity in synchronization with the depletion of the 1632 cm-1 band. Because the decay of the 1632 cm-1 band and the rise of the 1664 cm-1 band were fitted with bi-exponential model functions with common rate constants 0.5 and 11 µs-1, we propose that two kinds of enol form, single bond cis- (s-cis-) and trans- (s-trans-) enols, transformed into keto forms, cis-2-hydroxychalcone (Cc) and trans-2-hydroxychalcone (Ct), respectively. Quantum chemically calculated IR spectra of related species are consistent with the proposal. The observed temporal behavior of the TR-IR spectra indicates that there were reaction paths to the photogeneration of Cc and Ct within the time resolution of the TR-IR spectrometer (∼0.1 µs) in addition to the reaction paths via the enol forms of 2-hydroxychalcone.

Bulk-or-interface assignment of heterodyne-detected chiral vibrational sum frequency generation signal by its polarization dependence.

Polarization dependence of heterodyne-detected chiral vibrational sum frequency generation (VSFG) was examined for thin films of polylactic acids and neat limonene liquid far from electronic resonance. The enantiomers of polylactic acid films on silica substrates were successfully distinguished, and their chiral VSFG signals were ascribed not to bulk but to the interfaces by comparing chiral signals observed in reflection in the S-polarized VSFG, P-polarized visible, and P-polarized infrared and P-polarized VSFG, S-polarized visible, and P-polarized infrared polarization combinations with theoretical model calculations. In the same way, the chiral VSFG signal of neat limonene was assigned to bulk, which is consistent with the previous assignment. The method employed for assigning the source of chiral signals to the bulk or the interface may be useful for organic films on substrates with low refractive indices and thick samples.

Direct Detection of a Chemical Equilibrium between a Localized Singlet Diradical and Its σ-Bonded Species by Time-Resolved UV/Vis and IR Spectroscopy.

Localized singlet diradicals are key intermediates in bond homolyses. The singlet diradicals are energetically much less stable than the σ-bonded species. In general, only one-way reactions from diradicals to σ-bonded species are observed. In this study, a thermal equilibrium between a singlet 1,2-diazacyclopentane-3,5-diyl diradical and the corresponding σ-bonded species was directly observed. The singlet diradical was more stable than the σ-bonded species. The solvent effect clarified key features, such as the zwitterionic character of the singlet diradical. The effect of the nitrogen atoms is discussed in detail.

Molecular conformation of DPPC phospholipid Langmuir and Langmuir-Blodgett monolayers studied by heterodyne-detected vibrational sum frequency generation spectroscopy.

Heterodyne-detected (phase-sensitive) vibrational sum frequency generation spectroscopy was used to investigate molecular structures of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) monolayers on water (Langmuir monolayer) and monolayers on a fused silica substrate (Langmuir-Blodgett [LB] monolayer). The spectral features in the CH stretching region depended on the phase of the Langmuir monolayer, which was controlled by the molecular area on water. From the spectral changes, the molecular structure of the monolayer in each phase was deduced at the molecular level. We discovered that when we compared Langmuir and LB monolayers, both of which correspond to a similar surface pressure, the LB monolayer tended to have fewer gauche defects and have less tilted terminal methyls in the n-pentadecyl groups than the corresponding Langmuir monolayer. In addition, weak vibrational bands, which have been hardly seen by the conventional (homodyne-detected) VSFG spectroscopy, were clearly observed with their phases, or arguments, for the first time.

Sensitive and quantitative probe of molecular chirality with heterodyne-detected doubly resonant sum frequency generation spectroscopy.

Heterodyne-detected vibrationally electronically doubly resonant chiral sum frequency generation (HD-DR chiral SFG) spectroscopy has been developed for the study of chiral molecules with chromophores. The method enables us to detect and distinguish chiral molecules with high sensitivity and to obtain information on molecular vibrations. Strong enhancement due to the electronic resonance improves the sensitivity, and heterodyne detection ensures that the signal intensity is linear to the sample concentration. Detection of HD-DR chiral SFG signal from a dilute solution of binaphthol with 20 mM concentration and tens of nanometers thickness was demonstrated. Taking advantage of the enantiomer-dependent sign and linearity of the signal to the concentration, molecular concentrations and enantiomeric excesses were accurately evaluated. HD-DR chiral SFG is expected to have widespread application in the study of molecular chirality of thin films or samples of a very small quantity.

Communication: Salt-induced water orientation at a surface of non-ionic surfactant in relation to a mechanism of Hofmeister effect.

The behavior of water molecules at the surface of nonionic surfactant (monomyristolein) and effects of monovalent ions on the behavior are investigated using the heterodyne-detected vibrational sum frequency generation spectroscopy. It is found that water molecules at the surface are oriented with their hydrogen atoms pointing to the bulk, and that the degree of orientation depends on the anion strongly but weakly on the cation. With measured surface potentials in those saline solutions, it is concluded that the heterogeneous distribution of anions and cations in combination with the nonionic surfactant causes the water orientation. This heterogeneous distribution well explains the contrasting order of anions and cations with respect to the ion size in the Hofmeister series.

Time-resolved IR spectroscopy of 1,3-dicyanophenylcyclopentane-1,3-diyl diradicals: CN stretching wavenumber as a vibrational signature of radical character.

CN stretch bands of singlet and triplet cyclopentane-1,3-diyl diradicals (1,3-di(4-cyanophenyl)-2,2-dimethoxyoctahydropentalene-1,3-diyl and 1,3-di(4-cyanophenyl)-2,2-dimethyloctahydropentalene-1,3-diyl) were observed by time-resolved IR spectroscopy. CN stretching wavenumbers of the singlet and triplet diradicals were downshifted by 10 and 19 cm(-1) from those of their corresponding ring-closed compounds, which are in closed-shell electronic states, respectively. The observed downshifts are attributed to the bond-order decrease in the CN bonds due to the contribution from a resonance structure that has cumulative double bonds (C ═ C ═ N(•)) at the para-positions of the radical carbons. This resonance structure is only possible when the molecules have unpaired electrons; thus, the wavenumber downshift can be regarded as an experimental manifestation of the radical character of the diradicals. The observed CN stretching wavenumbers indicate that the radical character of the singlet diradical is less significant than that of the triplet. The smaller radical character is ascribed to the contribution from the zwitterionic and π-single bonding resonance structures in the singlet diradical. Unrestricted DFT calculations at the B3LYP level of theory with the 6-31G(d) basis set reproduced the small/large relationship between the wavenumber downshifts of the singlet and triplet diradicals; however, the shift of the singlet diradical was overestimated.

Chirality Discriminated by Heterodyne-Detected Vibrational Sum Frequency Generation.

We first demonstrated chiral vibrational sum frequency generation (VSFG) in the heterodyne detection, which enables us to uniquely determine chiral second-order nonlinear susceptibility consisting of phase and amplitude and distinguish molecular chirality with high sensitivity. Liquid limonene was measured to evaluate the heterodyne-detected chiral VSFG developed in this study. R-(+)- and S-(-)-limonene showed clearly opposite signs in the complex spectra of the second-order nonlinear susceptibility in the CH stretching region. This is the first report of the chiral distinction by VSFG without any a priori knowledge about chiral and achiral spectral response. Furthermore, from the phase of the chiral VSFG field measured in the heterodyne detection, the origin of the chiral signal was ascribed to the bulk limonene. The heterodyne detection also improves detection limits significantly, allowing us to observe weak chiral signals in reflection. The heterodyne-detected chiral VSFG can provide information on absolute molecular configuration.

Novel SiO2-deposited CaF2 substrate for vibrational sum-frequency generation (SFG) measurements of chemisorbed monolayers in an aqueous environment.

A novel SiO(2)-deposited CaF(2) (SiO(2)/CaF(2)) substrate for measuring vibrational sum-frequency generation (SFG) spectra of silane-based chemisorbed monolayers in aqueous media has been developed. The substrate is suitable for silanization and transparent over a broad range of the infrared (IR) probe. The present work demonstrates the practical application of the SiO(2)/CaF(2) substrate and, to our knowledge, the first SFG spectrum at the solid/water interface of a silanized monolayer observed over the IR fingerprint region (1780-1400 cm(-1)) using a back-side probing geometry. This new substrate can be very useful for SFG studies of various chemisorbed organic molecules, particularly biological compounds, in aqueous environments.

Self-assembled monolayers of double-chain disulfides of adenine on Au: an IR-UV sum-frequency generation spectroscopic study.

We have synthesized double-chain disulfides of adenine with different chain lengths (n = 2, 4, 5, 9, and 10) and studied their self-assembled monolayers (SAM) on gold surface by IR-UV doubly resonant sum frequency generation spectroscopy with the help of DFT calculation. A versatile way to investigate the orientation angle of functional groups of SAMs and their surface coverage has been demonstrated. It was revealed that the IR dipoles of the band at around 1630 cm(-1), which were almost parallel to the long molecular axis of the adenine ring, were less tilted with respect to the substrate surface in the SAMs with longer chains (n = 9 and 10) in comparison to those with shorter chains (n = 2, 4, and 5).

Chiral sum frequency spectroscopy of thin films of porphyrin J-aggregates.

Thin films of chiral porphyrin J-aggregates have been studied by vibrationally and electronically doubly resonant sum frequency generation (SFG) spectroscopy. It was revealed that the chiral supramolecular structures of porphyrin aggregates in solutions were retained in the thin film samples, and their chirality was determined by using chiral vibrational SFG spectroscopy. Electronic resonance profiles of some vibrational bands in achiral and chiral SFG were different from each other, and both were distinct from electronic absorption spectra. To account for these peculiar profiles, we have proposed interference effects of Raman tensor components in achiral and chiral SFG susceptibilities, which is analogous to that of resonance Raman scattering.

Infrared-ultraviolet sum-frequency generation spectrometer with a wide tunability of the ultraviolet probe.

We have constructed a multiplex infrared-ultraviolet (IR-UV) sum-frequency generation (SFG) spectrometer that has a wide tunable range (235-390 nm) of the UV probe wavelength. The tunable UV probe was obtained by doubling the signal output of an optical parametric amplifier pumped by a 400 nm picosecond pulse. A prism monochromator was used as a tunable sharp-cut bandpass filter to reduce stray light due to the scattering of the UV probe so that any wavelength within the tunable range can be chosen as that of the UV probe. The SFG spectra of p-mercaptobenzoic acid on a gold substrate was measured with 289 and 334 nm UV probes. The SFG vibrational band intensities due to the carbonyl stretch mode and a phenyl ring stretch mode measured with the 289 nm probe were approximately three times larger than those measured with the 334 nm probe. The enhancement was ascribed to an electronic resonant effect.

Molecular vibrations at a liquid-liquid interface observed by fourth-order Raman spectroscopy.

Interface-selective, Raman-based observation of molecular vibrations is demonstrated at a liquid-liquid interface. An aqueous solution of oxazine 170 dye interfaced with hexadecane is irradiated with pump and probe light pulses of 630-nm wavelengths in 17-fs width. The ultrashort pulses are broadened due to group velocity dispersion when traveling through the hexadecane layer. The dispersion is optically corrected to give an optimized instrumental response. The pump pulse induces a vibrational coherence of the dye via impulsive stimulated Raman scattering. The probe pulse generates second-harmonic light at the interface. The efficiency of the generation is modulated as a function of the pump-probe delay by the coherently excited molecules. Fourier transformation of the modulated efficiency presents the frequency spectrum of the vibrations. Five bands are recognized at 534, 557, 593, 619, and 683 cm(-1). The pump-and-probe process induces a fourth-order optical response that is forbidden in a centrosymmetric media. The contribution of an undesired, cascaded optical process is quantitatively considered and excluded.