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1.
Molecules ; 27(5)2022 Feb 23.
Article in English | MEDLINE | ID: mdl-35268608

ABSTRACT

Hepatitis E virus (HEV) is an understudied pathogen that causes infection through fecal contaminated drinking water and is prominently found in South Asian countries. The virus affects ~20 million people annually, leading to ~60,000 infections per year. The positive-stranded RNA genome of the HEV genotype 1 has four conserved open reading frames (ORFs), of which ORF1 encodes a polyprotein of 180 kDa in size, which is processed into four non-structural enzymes: methyltransferase (MTase), papain-like cysteine protease, RNA-dependent RNA polymerase, and RNA helicase. MTase is known to methylate guanosine triphosphate at the 5'-end of viral RNA, thereby preventing its degradation by host nucleases. In the present study, we cloned, expressed, and purified MTase spanning 33-353 amino acids of HEV genotype 1. The activity of the purified enzyme and the conformational changes were established through biochemical and biophysical studies. The binding affinity of MTase with magnesium ions (Mg2+) was studied by isothermal calorimetry (ITC), microscale thermophoresis (MST), far-UV CD analysis and, fluorescence quenching. In summary, a short stretch of nucleotides has been cloned, coding for the HEV MTase of 37 kDa, which binds Mg2+ and modulate its activity. The chelation of magnesium reversed the changes, confirming its role in enzyme activity.


Subject(s)
Hepatitis E virus
2.
Molecules ; 27(3)2022 Jan 29.
Article in English | MEDLINE | ID: mdl-35164209

ABSTRACT

Protein aggregation and amyloidogenesis have been associated with several neurodegenerative disorders like Alzheimer's, Parkinson's etc. Unfortunately, there are still no proper drugs and no effective treatment available. Due to the unique properties of noble metallic nanoparticles, they have been used in diverse fields of biomedicine like drug designing, drug delivery, tumour targeting, bio-sensing, tissue engineering etc. Small-sized silver nanoparticles have been reported to have anti-biotic, anti-cancer and anti-viral activities apart from their cytotoxic effects. The current study was carried out in a carefully designed in-vitro to observe the anti-amyloidogenic and inhibitory effects of biologically synthesized green silver nanoparticles (B-AgNPs) on human serum albumin (HSA) aggregation taken as a model protein. We have used different biophysical assays like thioflavin T (ThT), 8-Anilino-1-naphthalene-sulphonic acid (ANS), Far-UV CD etc. to analyze protein aggregation and aggregation inhibition in vitro. It has been observed that the synthesized fluorescent B-AgNPs showed inhibitory effects on protein aggregation in a concentration-dependent manner reaching a plateau, after which the effect of aggregation inhibition was significantly declined. We also observed meaningful chaperone-like aggregation-inhibition activities of as-synthesized florescent B-AgNPs in astrocytes.


Subject(s)
Chaperonins/metabolism , Drug Development , Green Chemistry Technology , Silver/chemistry , Metal Nanoparticles/chemistry
3.
Sci Rep ; 12(1): 1429, 2022 01 26.
Article in English | MEDLINE | ID: mdl-35082341

ABSTRACT

The passive transport of glucose and related hexoses in human cells is facilitated by members of the glucose transporter family (GLUT, SLC2 gene family). GLUT3 is a high-affinity glucose transporter primarily responsible for glucose entry in neurons. Changes in its expression have been implicated in neurodegenerative diseases and cancer. GLUT3 inhibitors can provide new ways to probe the pathophysiological role of GLUT3 and tackle GLUT3-dependent cancers. Through in silico screening of an ~ 8 million compounds library against the inward- and outward-facing models of GLUT3, we selected ~ 200 ligand candidates. These were tested for in vivo inhibition of GLUT3 expressed in hexose transporter-deficient yeast cells, resulting in six new GLUT3 inhibitors. Examining their specificity for GLUT1-5 revealed that the most potent GLUT3 inhibitor (G3iA, IC50 ~ 7 µM) was most selective for GLUT3, inhibiting less strongly only GLUT2 (IC50 ~ 29 µM). None of the GLUT3 inhibitors affected GLUT5, three inhibited GLUT1 with equal or twofold lower potency, and four showed comparable or two- to fivefold better inhibition of GLUT4. G3iD was a pan-Class 1 GLUT inhibitor with the highest preference for GLUT4 (IC50 ~ 3.9 µM). Given the prevalence of GLUT1 and GLUT3 overexpression in many cancers and multiple myeloma's reliance on GLUT4, these GLUT3 inhibitors may discriminately hinder glucose entry into various cancer cells, promising novel therapeutic avenues in oncology.


Subject(s)
Drug Discovery , Glucose Transporter Type 3/chemistry , Heterocyclic Compounds, 3-Ring/pharmacology , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae/drug effects , Small Molecule Libraries/pharmacology , Binding Sites , Biological Transport/drug effects , Cell Line, Tumor , Cell Survival/drug effects , Glucose Transporter Type 1/antagonists & inhibitors , Glucose Transporter Type 1/chemistry , Glucose Transporter Type 1/genetics , Glucose Transporter Type 1/metabolism , Glucose Transporter Type 2/antagonists & inhibitors , Glucose Transporter Type 2/chemistry , Glucose Transporter Type 2/genetics , Glucose Transporter Type 2/metabolism , Glucose Transporter Type 3/antagonists & inhibitors , Glucose Transporter Type 3/genetics , Glucose Transporter Type 3/metabolism , Glucose Transporter Type 4/antagonists & inhibitors , Glucose Transporter Type 4/chemistry , Glucose Transporter Type 4/genetics , Glucose Transporter Type 4/metabolism , Glucose Transporter Type 5/antagonists & inhibitors , Glucose Transporter Type 5/chemistry , Glucose Transporter Type 5/genetics , Glucose Transporter Type 5/metabolism , Heterocyclic Compounds, 3-Ring/chemistry , High-Throughput Screening Assays , Humans , Models, Molecular , Neoplasms/drug therapy , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Small Molecule Libraries/chemistry
4.
Int J Biol Macromol ; 190: 508-519, 2021 Nov 01.
Article in English | MEDLINE | ID: mdl-34481855

ABSTRACT

d-ribose, a reducing sugar, in diabetic hyperglycemia provokes non-enzymatic glycoxidation of hemoglobin (Hb), an abundant protein of red blood cells (RBCs). Different types of intermediates adduct formation occur during glycoxidation, such as advanced glycation end-products (AGEs) which lead to amyloid formation due to structural and conformational alterations in protein. Therefore, the study of these intermediate adducts plays a pivotal role to discern their relationship with diabetes mellitus and related disorders. Here, we investigated the interaction mechanism of d-ribose with Hb, and Hb prebound phytochemical thymoquinone (TQ). Our investigation reveals that the interaction of TQ with histidine residues of Hb interferes with the interaction of d-ribose with glycine residues at the glycation-site. Based on that, we had performed a time-based (21-days) in-vitro glycoxidation study at 37 °C to investigate the structural perturbation mechanism of Hb at different time-intervals in absence/presence of TQ. We found that prolonged glycoxidation induces amyloid formation in absence of TQ but in its presence, the process was prohibited. In summary, this study examined and characterized biophysically different intermediate-states of protein carrying glycoxidation-modification. Our findings suggested that TQ potentially affects interaction of d-ribose with Hb that prevents glycoxidation and protofibril formation, which establishes TQ as a potential therapeutic agent.


Subject(s)
Benzoquinones/pharmacology , Biophysical Phenomena , Hemoglobins/metabolism , Phytochemicals/pharmacology , Benzothiazoles/metabolism , Calorimetry , Dynamic Light Scattering , Glycation End Products, Advanced/chemistry , Glycation End Products, Advanced/metabolism , Glycosylation/drug effects , Hemoglobins/chemistry , Hemoglobins/ultrastructure , Hydrodynamics , Hydrophobic and Hydrophilic Interactions , Molecular Docking Simulation , Nephelometry and Turbidimetry , Protein Aggregates , Protein Binding , Protein Structure, Secondary , Ribose/chemistry , Spectrometry, Fluorescence , Thermodynamics
5.
Spectrochim Acta A Mol Biomol Spectrosc ; 225: 117510, 2020 Jan 15.
Article in English | MEDLINE | ID: mdl-31520999

ABSTRACT

In the present study, we report the cooperative refolding/renaturation behaviour of guanidinium hydrochloride (GdnHCl) denatured bovine serum albumin (BSA) in the presence of cationic surfactant cetyltrimethylammonium bromide (CTAB), anionic surfactant sodium dodecyl sulphate (SDS) and their catanionic mixture in the solution of 60 mM sodium phosphate buffer of physiological pH 7.4, using artificial chaperone-assisted two-step method. Here, we have employed biophysical techniques to characterize the refolding mechanism of denatured BSA after 200 times of dilution in the presence of cationic, anionic surfactants and their catanionic mixture, separately. We have found that minimum refolding of diluted BSA in the presence of 1:1 rational mixture of CTAB and SDS (CTAB/SDS = 50/50), it may be due to the micelles formation which is responsible for the unordered microstructure aggregate formation. Other mixtures (CTAB/SDS = 20/80 and 80/20) slightly played an effective role during refolding process in the presence of methyl-ß-cyclodextrin. On other hand, CTAB and SDS are more effective and reflect a good renaturation tendency of denatured BSA solution separately and in existence of methyl-ß-cyclodextrin as compare to their mixture compositions. But overall, CTAB has the better renaturation tendency as compare to SDS in the existence of methyl-ß-cyclodextrin. These results ascribed the presence of charge head group and length of hydrophobic tail of CTAB surfactant that plays an important task during electrostatic and hydrophobic interactions at pH 7.4 at which BSA carries negative charge on their surface. These biophysical parameters suggest that, CTAB surfactant assisted artificial chaperone protocol may be utilized in the protein renaturation/refolding studies, which may address the associated problems of biotechnological industries for the development of efficient and inexpensive folding aides, which may also be used to produced genetically engineered cells related diseases, resulting from protein misfolding/aggregation.


Subject(s)
Guanidine , Protein Refolding , Serum Albumin, Bovine/chemistry , Animals , Biophysical Phenomena , Cattle , Cetrimonium/pharmacology , Circular Dichroism , Dynamic Light Scattering , Guanidine/pharmacology , In Vitro Techniques , Molecular Chaperones , Protein Denaturation/drug effects , Protein Refolding/drug effects , Protein Renaturation/drug effects , Serum Albumin, Bovine/drug effects , Sodium Dodecyl Sulfate/pharmacology , Spectrometry, Fluorescence , Surface-Active Agents/pharmacology , beta-Cyclodextrins/chemistry
6.
J Biomol Struct Dyn ; 37(6): 1390-1401, 2019 04.
Article in English | MEDLINE | ID: mdl-29669491

ABSTRACT

Alpha1-acid glycoprotein (AAG) is a major acute phase protein of human plasma. Binding of clofazimine to AAG is investigated using optical spectroscopy and molecular docking tools. We found significant quenching of intrinsic fluorescence of AAG upon the binding of clofazimine, binding mode is static with binding constant of 3.52 × 104at 298 K. The Gibbs free energy change is found to be negative for the interaction of clofazimine with AAG indicating spontaneity of the binding process. Binding of clofazimine induced ordered structure in protein and lead to molecular compaction. Molecular docking results indicate the binding site is located in the central beta barrel, hydrogen bonding and hydrophobic interactions are main bonding forces between AAG-clofazimine.


Subject(s)
Biophysical Phenomena , Clofazimine/chemistry , Molecular Docking Simulation , Molecular Dynamics Simulation , Orosomucoid/chemistry , Binding Sites , Clofazimine/metabolism , Humans , Molecular Structure , Orosomucoid/metabolism , Protein Binding , Spectrum Analysis , Structure-Activity Relationship , Thermodynamics
7.
Int J Biol Macromol ; 112: 134-147, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29378270

ABSTRACT

Glycation of biological macromolecule leads to the establishment of advanced glycation end products (AGEs) having implications in metabolic disorders. d­ribose appears to be the most reactive among the naturally occurring sugars and contribute significantly to the glycation reactions in vivo, however, no report have been published yet to discuss d­ribose induced glycation of hemoglobin (Hb). Therefore, the present study was designed to investigate d­ribose induced glycoxidative damage to Hb protein. Briefly, the commercially available Hb was glycated with d­ribose for varying time intervals. The structural perturbation induced in glycated Hb (GHb) was confirmed by biophysical techniques viz., UV-visible, fluorescence spectroscopy, circular dichroism, Fourier transform infra-red spectroscopy, dynamic light scattering, MALDIthermal denaturation by UV-visible spectrophotometer and DSC. Biophysical techniques confirm the secondary and tertiary structural perturbation in GHb as compared to native Hb. The values of carbonyl content, hydroxy methyl furfural, thiobarbituric acid reactive substance and nitro blue tetrazolium were found to be increased and free lysine and free arginine content were decreased in the GHb due to structural change. Thus, results of this study have established that glycation with d­ribose lead to the structural changes in the native Hb which might play an important role in pathophysiology metabolic diseases.


Subject(s)
Glycated Hemoglobin/chemistry , Glycosylation , Hemoglobins/chemistry , Ribose/chemistry , Arginine/chemistry , Circular Dichroism , Dynamic Light Scattering , Glycation End Products, Advanced/chemistry , Humans , Lysine/chemistry , Spectrometry, Fluorescence , Spectroscopy, Fourier Transform Infrared
8.
Int J Biol Macromol ; 106: 1115-1129, 2018 Jan.
Article in English | MEDLINE | ID: mdl-28890370

ABSTRACT

This review article summarises the possible mechanisms of the protein-ligand interaction, folding, misfolding, aggregation and inhibition of protein aggregates. Under certain stressed condition the folding process deviates from its path and results into misfolding and aggregation of proteins. So aggregates have to be inhibited in order to cure the diseases. In some cases of protein-ligand interaction studies we have seen that the interaction of a protein with more than one ligand may show both type of quenching mechanisms i.e. dynamic as well as static quenching rather than single type of quenching mechanism, that result can be entirely different by the result of binding study utilising single ligand. So, likewise it is hypothesized that if the aggregates are inhibited by using more than one inhibitor may give more fruitful results rather than application of single inhibitor in inhibition and disaggregation of the preformed aggregates. Therefore, we have hypothesized mechanisms for the inhibition of protein aggregates that may assist in curing the neurodegenerative diseases. Thus, besides the mechanism of protein-ligand interaction, folding, misfolding and aggregation; the hypothesized mechanisms for the inhibition of protein aggregates may show new route to researchers either directly or indirectly in treating the diseases.


Subject(s)
Neurodegenerative Diseases/metabolism , Protein Aggregates , Protein Aggregation, Pathological/metabolism , Proteins/chemistry , Humans , Ligands , Neurodegenerative Diseases/etiology , Neurodegenerative Diseases/pathology , Protein Aggregation, Pathological/pathology , Protein Folding , Proteins/metabolism
9.
J Biomol Struct Dyn ; 36(5): 1261-1273, 2018 Apr.
Article in English | MEDLINE | ID: mdl-28399705

ABSTRACT

The aggregation phenomenon (amyloid and amorphous) is associated with several pathological complications in human, such as Alzheimer's, Parkinson's, Huntington, Cataract diseases, and Diabetes mellitus type 2. In the present study we are offering evidence and breaking the general belief with regard to the polyphenols action as protein aggregate inhibitors. Herein we confirm that tannic acid (TA) is not only an amyloid inducer, but also it switches one type of conformation, ultimately morphology, into another. We ascertain based on our findings that aggregates are not rigid structures and the stability can be challenged under certain conditions. This study also confirms that unfolded and amorphous aggregates can serve as precursors of amyloids and TA interactions with unordered aggregates (amorphous) bringing orderliness in the conformation via amyloidosis. The shifting of unordered conformation toward orderliness is governed by the modulation in surface hydrophobic patches in Concanavalin A (ConA). Hence, a degree of exposed hydrophobic cluster can be claimed as a strong parameter to detect and distinguish the native, amorphous and both types of amyloids. Turbidity and Rayleigh light scattering measurements followed similar pattern while Thioflavin T and 1-anilino-8-naphthalene sulfonate fluorescence assays of the binding with amorphous and amyloid followed an inverse relation. Electron microscopic studies revealed the morphological variation in the ConA at 65°C as amorphous while the ConA treated with TA followed by heat treatment at 65°C was defined as amyloid in nature. Interestingly for the first time we are reporting the slight agglutination activity by the ConA amyloids.


Subject(s)
Amyloid/chemistry , Biophysical Phenomena , Concanavalin A/chemistry , Protein Conformation , Tannins/chemistry , Amyloid/metabolism , Amyloid/ultrastructure , Benzothiazoles/chemistry , Protein Aggregates/drug effects , Spectrum Analysis , Tannins/pharmacology
10.
Int J Biol Macromol ; 107(Pt B): 2450-2464, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29102789

ABSTRACT

Numerous phenolic compounds have been reported in the last decade that have a good antioxidant property and interaction affinity towards mammalian serum albumins. In the present study, we have utilized mammalian serum albumins as a model protein to examine their comparative interaction property with polyphenolic compound tannic acid (TA) by using various spectroscopic and calorimetric methods We have also monitored the esterase and antioxidant activity of mammalian serum albumins in the absence and presence of TA. The obtain results recommended that the TA have a good binding affinity (∼104 to 106M-1) towards mammalian serum albumins and shows double sequential binding sites, which depends on the concentration of TA that induced the conformational alteration which responsible for the thermal stability of proteins. Binding affinity, structural transition and thermodynamic parameters were calculated from spectroscopic and calorimetric method reveals that non-covalent interaction causes partial conformational alteration in the secondary structure of protein ie.; increase in α-helical content with decrease in ß-sheet, random coil and other structure. Meanwhile, we have found that esterase activities of serum albumins were also stabilized against hydrolysis and shows higher antioxidant activity in the presence of TA because albumins its self have an immense antioxidant activity beside TA.


Subject(s)
Polyphenols/chemistry , Protein Binding , Serum Albumin/chemistry , Tannins/chemistry , Animals , Binding Sites , Biophysical Phenomena , Cattle , Circular Dichroism , Humans , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Structure, Secondary , Serum Albumin/ultrastructure , Thermodynamics
11.
Int J Biol Macromol ; 94(Pt A): 290-300, 2017 Jan.
Article in English | MEDLINE | ID: mdl-27744055

ABSTRACT

Under physical or chemical stress, proteins tend to form aggregates either highly ordered (amyloid) or unordered (amorphous) causing many pathological disorders in human and loss of proteins functionality in both laboratory conditions and industries during production and storage at commercial level. We investigated the effect of increasing temperature on Conalbumin (CA) and induced aggregation at 65°C. The enhanced Thioflavin T (ThT) and ANS (1-anilinonaphtalene 8-sulfonic acid) fluorescence intensity, show no shift on Congo red binding, additionally, transmission and scanning electron microscopy (TEM) (SEM) reveal amorphous morphology of the aggregate. Our investigation clearly demonstrated that polyols namely Glycerol (GL) and Ethylene glycol (EG) are so staunch to inhibit amorphous aggregates via restoring secondary conformation. Addition of polyols (15% GL and 35% EG) significantly decrease the turbidity, Rayleigh scattering ThT and ANS fluorescence intensity. The dynamic light scattering (DLS) data show that hydrodynamic radii (Rh) of the aggregates is ∼20 times higher than native CA while nearly similar for GL and EG protected CA due to condensation of core size with little difference.


Subject(s)
Conalbumin/chemistry , Ethylene Glycol/chemistry , Glycerol/chemistry , Benzothiazoles , Circular Dichroism , Dynamic Light Scattering , Metalloproteases/chemistry , Protein Aggregates , Protein Structure, Secondary , Thiazoles/chemistry
12.
Int J Biol Macromol ; 93(Pt A): 1174-1182, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27693336

ABSTRACT

Quaternary amine of diethylaminoethyl rosin ester (QRMAE), chemically synthesized by rosin modified biocompatible cationic surfactant, has various biological applications in the field of pharmacy as well as used as food product additive. Here, we report biophysical insights in to the interaction mechanism of thymoquinone (TQ), copper nanoparticles (Cu-NPs) and QRMAE with bovine serum albumin (BSA) individually and also in complexes forms to determine their competitive binding affinity. We have also studied the aggregation-inhibition effects of Cu-NPs and TQ individually, as well as in complexes form in the presence of QRMAE surfactant which is responsible for induction of amorphous aggregates in BSA within hours of incubation at 65°C and physiological pH. The formation of aggregates was established by using various spectroscopic methods and dye binding assay. The circular dichroism (CD) spectroscopy showed that QRMAE significantly altered the secondary structure of BSA. However, the presence of TQ and Cu-NPs restricted the aggregation process which was observed to be more efficient when TQ and Cu-NPs were present together. This study provides very significant competitive binding results of QRMAE, Cu-NPs, TQ and protein aggregation behavior at higher temperature which was induced by rosin surfactant QRMAE, and protein aggregation process was inhibited by Cu-NPs, TQ individually and together. Therefore, our finding suggested that rosin surfactant QRMAE has high propensity to induce amorphous aggregation in BSA which was favored at elevated temperature and higher concentration of the protein. When BSA-QRMAE sample was incubated in the presence Cu-NPs under similar condition, the aggregation propensity reduced, and drastically inhibited by TQ and Cu-NPs together.


Subject(s)
Benzoquinones/chemistry , Benzoquinones/pharmacology , Biophysical Phenomena , Copper/chemistry , Metal Nanoparticles/chemistry , Protein Aggregates/drug effects , Animals , Binding, Competitive , Cattle , Hydrogen-Ion Concentration , Resins, Plant/chemistry , Serum Albumin, Bovine/chemistry , Temperature
13.
Int J Biol Macromol ; 82: 844-55, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26552019

ABSTRACT

This study represents an analysis of the thermal aggregation of human serum albumin (HSA) induced by novel rosin modified compounds. The aggregation process causes conformational alterations in the secondary and tertiary structures of the proteins. The conversion of globular protein to amorphous aggregates was carried out by spectroscopic, calorimetric and microscopic techniques to investigate the factors that are responsible for the structural, conformational and morphological alteration in the protein. Our outcome results show that the aggregation of HSA was dependent on the hydrophobicity, charge and temperature, because the formation of amorphous aggregates occurs in the presence of a novel cationic rosin compound, quaternary amine of rosin diethylaminoethyl ester (QRMAE), at 40°C and pH 7.4 (but at 25°C on similar pH value, there was no evidence of aggregate formation). In addition, the parent compound of QRMAE, i.e., abietic acid, and other derivatives such as nonionic rosin compounds [(RMPEG-750) and (RMA-MPEG-750)] do not shows the aggregating property. This work provides precise and necessary information that aid in the understanding the effects of rosin derivative compounds on HSA. This study also restrains important information for athletes, health providers, pharmaceutical companies, industries, and soft drink-processing companies.


Subject(s)
Protein Aggregates , Serum Albumin/chemistry , Temperature , Calorimetry , Circular Dichroism , Humans , Hydrophobic and Hydrophilic Interactions , Protein Binding , Protein Conformation , Protein Stability , Spectroscopy, Fourier Transform Infrared , Surface-Active Agents/chemistry , Thermodynamics
14.
J Biomol Struct Dyn ; 34(7): 1545-60, 2016 Jul.
Article in English | MEDLINE | ID: mdl-26309154

ABSTRACT

In the present work, we have examined the binding parameters, thermodynamics, and stability of human serum albumin (HSA) isoforms at pH 7.4 and 9.0, using spectroscopic, calorimetric, and molecular docking methods in the presence of water-soluble camptothecin analog irinotecan hydrochloride (CPT-11). We observed that CPT-11 binds to HSA through a static quenching procedure of ground-state complex formation with N-isoform and B-isoform. Hydrogen bond and hydrophobic interactions are the major governing forces that participating in the formation of protein-drug complex. To determine the binding site of CPT-11 within HSA molecules, we also have performed molecular docking experiments. We explored the CPT-11-mediated stability and modulation of HSA by performing dynamic light scattering (DLS) and differential scanning calorimetry (DSC) experiments. DLS and DSC techniques are used to determine the size and the melting point (Tm) of HSA, which was decreased in the presence of CPT-11. Therefore, CPT-11 plays an important role in HSA stability and protein-ligand interactions. The present study provides valuable information in the field of pharmacokinetics, pharmaco-dynamics, and drug discovery.


Subject(s)
Camptothecin/analogs & derivatives , Molecular Docking Simulation , Serum Albumin/chemistry , Thermodynamics , Camptothecin/chemistry , Camptothecin/metabolism , Humans , Irinotecan , Kinetics , Molecular Conformation , Molecular Dynamics Simulation , Molecular Structure , Protein Binding , Protein Stability , Serum Albumin/metabolism , Spectrum Analysis
15.
J Biomol Struct Dyn ; 34(7): 1409-20, 2016 Jul.
Article in English | MEDLINE | ID: mdl-26208966

ABSTRACT

6-thioguanine (6-TG) is an antineoplastic, nucleobase guanine, purine analog drug belongs to thiopurine drug-family of antimetabolites. In the present study, we report an experimental approach towards interaction mechanism of 6-TG with human serum albumin (HSA) and examine the chemical stability of HSA in the presence of denaturants such as guanidine hydrochloride (GdnHCl) and urea. Interaction of 6-TG with HSA has been studied by various spectroscopic and spectropolarimeteric methods to investigate what short of binding occurs at physiological conditions. 6-TG binds in the hydrophobic cavity of subdomain IIA of HSA by static quenching mechanism which induces conformation alteration in the protein structure. That helpful for further study of denaturation process where change in secondary structures causes unfolding of protein that also responsible for severance of domain III from rest of the protein part. We have also performed molecular simulation and molecular docking study in the presence of denaturating agents to determine the binding property of 6-TG and the effect of denaturating agents on the structural activity of HSA. We had found that GdnHCl is more effective denaturating agent when compared to urea. Hence, this study provides straight evidence of the binding mechanism of 6-TG with HSA and the formation of intermediate or unfolding transition that causes unfolding of HSA.


Subject(s)
Guanidine/chemistry , Molecular Dynamics Simulation , Serum Albumin/chemistry , Spectrum Analysis , Thioguanine/chemistry , Urea/chemistry , Guanidine/pharmacology , Humans , Molecular Conformation , Molecular Docking Simulation , Protein Binding , Protein Denaturation/drug effects , Protein Folding/drug effects , Structure-Activity Relationship , Thioguanine/pharmacology , Urea/pharmacology
16.
PLoS One ; 10(9): e0139027, 2015.
Article in English | MEDLINE | ID: mdl-26418451

ABSTRACT

Quaternary amine of diethylaminoethyl rosin ester (QRMAE), chemically synthesized biocompatible rosin based cationic surfactant, has various biological applications including its use as a food product additive. In this study, we examined the amorphous aggregation behavior of mammalian serum albumins at pH 7.5, i.e., two units above their isoelectric points (pI ~5.5), and the roles played by positive charge and hydrophobicity of exogenously added rosin surfactant QRMAE. The study was carried out on five mammalian serum albumins, using various spectroscopic methods, dye binding assay, circular dichroism and electron microscopy. The thermodynamics of the binding of mammalian serum albumins to cationic rosin modified surfactant were established using isothermal titration calorimetry (ITC). It was observed that a suitable molar ratio of protein to QRMAE surfactant enthusiastically induces amorphous aggregate formation at a pH above two units of pI. Rosin surfactant QRMAE-albumins interactions revealed a unique interplay between the initial electrostatic and the subsequent hydrophobic interactions that play an important role towards the formation of hydrophobic interactions-driven amorphous aggregate. Amorphous aggregation of proteins is associated with varying diseases, from the formation of protein wine haze to the expansion of the eye lenses in cataract, during the expression and purification of recombinant proteins. This study can be used for the design of novel biomolecules or drugs with the ability to neutralize factor(s) responsible for the aggregate formation, in addition to various other industrial applications.


Subject(s)
Protein Aggregates/drug effects , Resins, Plant/pharmacology , Serum Albumin/chemistry , Serum Albumin/metabolism , Surface-Active Agents/pharmacology , Animals , Cattle , Circular Dichroism , Humans , Hydrogen-Ion Concentration , Hydrophobic and Hydrophilic Interactions , Isoelectric Point , Rabbits , Resins, Plant/chemistry , Sheep , Surface-Active Agents/chemistry , Swine , Thermodynamics
17.
Int J Biol Macromol ; 78: 417-28, 2015.
Article in English | MEDLINE | ID: mdl-25900857

ABSTRACT

Here we have used five non-fluorinated cosolvents (acetonitrile, ethanol, methanol, sec-butanol and ter-butanol) at increasing concentrations and analyzed their aggregation inducing behavior on interaction with conalbumin (CA). The aggregates were identified as amorphous by performing spectroscopic experiments like circular dichroism and dye binding assay. The amorphous aggregate contains rich ß-sheet content, show insignificant increment in Thioflavin-T (ThT) fluorescence intensity but strong 1-anilino-8-napthalene sulfonate (ANS) binding with enhanced fluorescence intensity. We also performed transmission electron microscope (TEM) and scanning electron microscope (SEM) imaging of the aggregates which made the result more informative. The morphology appeared on TEM imaging shows aggregates but there is no exhibition of fibril formation, as was observed in amyloid induced by 2,2,2-trifuoroethanol (TFE) and 1,1,1,3,3,3-hexafluoro-propan-2-ol (HFIP). SEM imaging also gives the similar results indicating the formation of amorphous aggregates. Web based tools (Waltz and AGGRESCAN) predicted aggregation prone regions in CA which are accountable for the aggregation.


Subject(s)
Conalbumin/chemistry , Metalloproteases/chemistry , Solvents/chemistry , Animals , Benzothiazoles , Kinetics , Models, Molecular , Protein Aggregates/drug effects , Protein Binding , Protein Conformation , Solvents/pharmacology , Spectrum Analysis/methods , Thiazoles/chemistry
18.
Int J Biol Macromol ; 78: 379-88, 2015.
Article in English | MEDLINE | ID: mdl-25863156

ABSTRACT

Protein aggregation is associated with many serious diseases including Parkinson's and Alzheimer's. Protein aggregation is a primary problem related with the health of industrial workers who work with the surfactants, metal ions, and cosolvents. We have synthesized rosin-based surfactants, i.e., quaternary amines of rosin diethylaminoethyl esters (QRMAE), which is an ester of rosin acid with polyethylene glycol monomethyl ether. Here, we report the thermal aggregation of lysozyme induced by QRMAE at 65 °C and pH 7.4 for a given time period in which amorphous aggregates are formed and confirm that copper-nanoparticles have the ability to inhibit QRMAE-induced aggregation compared with zinc and silver-nanoparticles. Aggregation experiments was evaluated using several spectroscopic methods and dye binding assay, such as turbidity, Rayleigh light scattering, 1-anilino-8-naphthalene sulfonate (ANS), Thioflavin T (Th T), congo red (CR) and circular dichroism (CD), that was further supported by scanning electron microscopy (SEM) and SEM with EDX. The therapeutic use of nanoparticles and the fact that rosin possesses excellent film-forming properties, and that its derivatives have pharmaceuticals application such as micro encapsulation, coating and film forming, it's matrix materials are used for sustained and controlled release tablets, renders importance and application to the present study.


Subject(s)
Copper/chemistry , Copper/pharmacology , Metal Nanoparticles , Muramidase/chemistry , Protein Aggregates/drug effects , Resins, Plant/chemistry , Surface-Active Agents/chemistry , Surface-Active Agents/pharmacology , Animals , Circular Dichroism , Congo Red/chemistry , Microscopy, Electron, Scanning , Muramidase/metabolism
19.
IUBMB Life ; 67(5): 338-47, 2015 May.
Article in English | MEDLINE | ID: mdl-25914162

ABSTRACT

Hyperglycemia is the defining feature of diabetes mellitus. The persistently high levels of reducing sugars like glucose and fructose cause glycation of various macromolecules in the body. Human serum albumin (HSA), the most abundant serum protein with a myriad of functions, is prone to glycation and consequent alteration in its structural and biological properties. This study aimed to assess the role of fructose-modified human serum albumin as a marker of diabetic pathophysiology. We carried out modification of HSA with fructose and the changes induced were studied by various physicochemical studies. Fructose modified-HSA showed hyperchromicity in UV spectrum and increased AGE-specific fluorescence as well as quenching of tryptophan fluorescence. In SDS-PAGE protein aggregation was seen. Amadori products were detected by NBT. The fructose modified HSA had higher content of carbonyls along with perturbations in secondary structure as revealed by CD and FT-IR. A greater hydrodynamic radius of fructose-modified HSA was evident by DLS measurement. The fructose-modified HSA induced high titre antibodies in experimental animals exhibiting high specificity towards the immunogen.


Subject(s)
Epitopes/immunology , Fructose/metabolism , Serum Albumin/immunology , Electrophoresis, Polyacrylamide Gel , Enzyme-Linked Immunosorbent Assay , Humans , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet
20.
Int J Biol Macromol ; 75: 447-52, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25681619

ABSTRACT

In this study we have investigated the heat induced denaturation of HSA by utilizing spectroscopic approaches including fluorescence and circular dichroism. Thermal denaturation of N isomer (domains I-III remain intact), B isomer (loss of helical structure of interdomain contacts) and I state (domain II intact) was found to be co-operative processes while for F isomer domains unfold non-cooperatively. These finding pointed out that during N-F transition, HSA suffers more structural alterations which are not localized only to domain III. Loss of secondary structure in the temperature range 20-60 °C without effecting tertiary structure of N isomer of HSA is mainly due to loss in helical extensions connecting domain I to II and domain II to III. All the four thermally denatured states (60-96 °C) of HSA retained approximately 50% residual α-helical structures. Near-UV spectroscopy used as a probe for tertiary structure indicated that heat denatured states lost almost all of the tertiary contacts thereby forming molten globule like states. Furthermore, our results provide evidence that residual helical structures are mainly located in domain II.


Subject(s)
Protein Unfolding , Serum Albumin/chemistry , Serum Albumin/metabolism , Temperature , Circular Dichroism , Humans , Isomerism , Protein Denaturation , Protein Structure, Secondary , Protein Structure, Tertiary , Spectrometry, Fluorescence
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