Molecular epidemiology of animal rabies in the semiarid region of Paraíba, Northeastern Brazil / Epidemiologia molecular da raiva animal no semiárido da Paraíba, Nordeste do Brasil

In the semiarid of the state of Paraíba, the anti-rabies vaccination is not common, most of the local inhabitants who deal with the animals do not know the incidence of the disease in the region. In this study, samples of foxes (Pseudalopex vetulus), insectivorous bats (Molossus molossus), raccoons (Procyon cancrivorous) and domestic animals brains were submitted to the diagnosis of rabies, by using the direct fluorescent antibody technique (d-FAT) and mouse inoculation test (MIT). Of the 581 examined materials, 50 (8.60 %) were positive for d-FAT and 47 (8.09 %) for MIT. From the positive samples for rabies, RNAs were extracted and transformed to cDNA, at the Laboratory of Rabies/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. The phylogenetic characterization of the N gene was performed at the Universidade de São Paulo, Faculdade de Medicina Veterinária e Zootecnia, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Universidade Nihon, Faculdade de Ciências Bioresource, Fujisawa, Kanagawa, Japão. Based on the results of genotyping and phylogenetic analyzes, it is concluded that the epidemiology of rabies is complex in the semiarid of Paraíba, with different viral variants being maintained in domestic dogs, foxes, insectivorous bats and vampire bats. All the isolates examined belong to the genotype I of the genus Lyssavirus and it is possible to state that in the region, foxes are important sylvatic reservoirs of the rabies virus. (AU)

No semiárido do Estado da Paraíba, a vacinação antirrábica não é comum, a maioria dos habitantes locais que lidam com os animais não conhece a incidência da doença na região. Neste estudo, amostras do cérebro de raposas (Pseudalopex vetulus), de morcegos insetívoros (Molossus molossus), de guaxinins (Procyon cancrivorous) e de animais domésticos foram submetidas ao diagnóstico da raiva, pela técnica de imunofluorescência direta (IFD) e inoculação intracerebral em camundongos (ICC). Dos 581 materiais examinados, 50 (8,60%) foram positivos para IFD e 47 (8,09%) para o ICC. Das amostras positivas para raiva, os RNAs foram extraídos e transformados em DNA, no Laboratório de Raiva/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. A caracterização filogenética do gene N foi realizada no Centro de Investigação Veterinária, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Ciências Bioresource, Nihon University, Fujisawa, Kanagawa, Japão. Com base nos resultados das análises filogenéticas e genotipagem, conclui-se que a epidemiologia da raiva é complexa no semiárido da Paraíba, com diferentes variantes virais sendo mantidas em cães domésticos, raposas, morcegos insetívoros e morcegos hematófagos. Todos os isolados analisados pertencem ao genótipo I do gênero Lyssavirus, e é possível afirmar que, na região, as raposas são importantes reservatórios silvestres do vírus da raiva.(AU)

Molecular epidemiology of animal rabies in the semiarid region of Paraíba, Northeastern Brazil

In the semiarid of the state of Paraíba, the anti-rabies vaccination is not common, most of the local inhabitants who deal with the animals do not know the incidence of the disease in the region. In this study, samples of foxes (Pseudalopex vetulus), insectivorous bats (Molossus molossus), raccoons (Procyon cancrivorous) and domestic animals brains were submitted to the diagnosis of rabies, by using the direct fluorescent antibody technique (d-FAT) and mouse inoculation test (MIT). Of the 581 examined materials, 50 (8.60 %) were positive for d-FAT and 47 (8.09 %) for MIT. From the positive samples for rabies, RNAs were extracted and transformed to cDNA, at the Laboratory of Rabies/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. The phylogenetic characterization of the N gene was performed at the Universidade de São Paulo, Faculdade de Medicina Veterinária e Zootecnia, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Universidade Nihon, Faculdade de Ciências Bioresource, Fujisawa, Kanagawa, Japão. Based on the results of genotyping and phylogenetic analyzes, it is concluded that the epidemiology of rabies is complex in the semiarid of Paraíba, with different viral variants being maintained in domestic dogs, foxes, insectivorous bats and vampire bats. All the isolates examined belong to the genotype I of the genus Lyssavirus and it is possible to state that in the region, foxes are important sylvatic reservoirs of the rabies virus.

No semiárido do Estado da Paraíba, a vacinação antirrábica não é comum, a maioria dos habitantes locais que lidam com os animais não conhece a incidência da doença na região. Neste estudo, amostras do cérebro de raposas (Pseudalopex vetulus), de morcegos insetívoros (Molossus molossus), de guaxinins (Procyon cancrivorous) e de animais domésticos foram submetidas ao diagnóstico da raiva, pela técnica de imunofluorescência direta (IFD) e inoculação intracerebral em camundongos (ICC). Dos 581 materiais examinados, 50 (8,60%) foram positivos para IFD e 47 (8,09%) para o ICC. Das amostras positivas para raiva, os RNAs foram extraídos e transformados em DNA, no Laboratório de Raiva/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. A caracterização filogenética do gene N foi realizada no Centro de Investigação Veterinária, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Ciências Bioresource, Nihon University, Fujisawa, Kanagawa, Japão. Com base nos resultados das análises filogenéticas e genotipagem, conclui-se que a epidemiologia da raiva é complexa no semiárido da Paraíba, com diferentes variantes virais sendo mantidas em cães domésticos, raposas, morcegos insetívoros e morcegos hematófagos. Todos os isolados analisados pertencem ao genótipo I do gênero Lyssavirus, e é possível afirmar que, na região, as raposas são importantes reservatórios silvestres do vírus da raiva.

Molecular epidemiology of animal rabies in the semiarid region of Paraíba, Northeastern Brazil / Epidemiologia molecular da raiva animal no semiárido da Paraíba, Nordeste do Brasil

In the semiarid of the state of Paraíba, the anti-rabies vaccination is not common, most of the local inhabitants who deal with the animals do not know the incidence of the disease in the region. In this study, samples of foxes (Pseudalopex vetulus), insectivorous bats (Molossus molossus), raccoons (Procyon cancrivorous) and domestic animals brains were submitted to the diagnosis of rabies, by using the direct fluorescent antibody technique (d-FAT) and mouse inoculation test (MIT). Of the 581 examined materials, 50 (8.60 %) were positive for d-FAT and 47 (8.09 %) for MIT. From the positive samples for rabies, RNAs were extracted and transformed to cDNA, at the Laboratory of Rabies/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. The phylogenetic characterization of the N gene was performed at the Universidade de São Paulo, Faculdade de Medicina Veterinária e Zootecnia, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Universidade Nihon, Faculdade de Ciências Bioresource, Fujisawa, Kanagawa, Japão. Based on the results of genotyping and phylogenetic analyzes, it is concluded that the epidemiology of rabies is complex in the semiarid of Paraíba, with different viral variants being maintained in domestic dogs, foxes, insectivorous bats and vampire bats. All the isolates examined belong to the genotype I of the genus Lyssavirus and it is possible to state that in the region, foxes are important sylvatic reservoirs of the rabies virus.

No semiárido do Estado da Paraíba, a vacinação antirrábica não é comum, a maioria dos habitantes locais que lidam com os animais não conhece a incidência da doença na região. Neste estudo, amostras do cérebro de raposas (Pseudalopex vetulus), de morcegos insetívoros (Molossus molossus), de guaxinins (Procyon cancrivorous) e de animais domésticos foram submetidas ao diagnóstico da raiva, pela técnica de imunofluorescência direta (IFD) e inoculação intracerebral em camundongos (ICC). Dos 581 materiais examinados, 50 (8,60%) foram positivos para IFD e 47 (8,09%) para o ICC. Das amostras positivas para raiva, os RNAs foram extraídos e transformados em DNA, no Laboratório de Raiva/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. A caracterização filogenética do gene N foi realizada no Centro de Investigação Veterinária, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Ciências Bioresource, Nihon University, Fujisawa, Kanagawa, Japão. Com base nos resultados das análises filogenéticas e genotipagem, conclui-se que a epidemiologia da raiva é complexa no semiárido da Paraíba, com diferentes variantes virais sendo mantidas em cães domésticos, raposas, morcegos insetívoros e morcegos hematófagos. Todos os isolados analisados pertencem ao genótipo I do gênero Lyssavirus, e é possível afirmar que, na região, as raposas são importantes reservatórios silvestres do vírus da raiva.

Molecular epidemiology of animal rabies in the semiarid region of Paraíba, Northeastern Brazil

In the semiarid of the state of Paraíba, the anti-rabies vaccination is not common, most of the local inhabitants who deal with the animals do not know the incidence of the disease in the region. In this study, samples of foxes (Pseudalopex vetulus), insectivorous bats (Molossus molossus), raccoons (Procyon cancrivorous) and domestic animals brains were submitted to the diagnosis of rabies, by using the direct fluorescent antibody technique (d-FAT) and mouse inoculation test (MIT). Of the 581 examined materials, 50 (8.60 %) were positive for d-FAT and 47 (8.09 %) for MIT. From the positive samples for rabies, RNAs were extracted and transformed to cDNA, at the Laboratory of Rabies/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. The phylogenetic characterization of the N gene was performed at the Universidade de São Paulo, Faculdade de Medicina Veterinária e Zootecnia, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Universidade Nihon, Faculdade de Ciências Bioresource, Fujisawa, Kanagawa, Japão. Based on the results of genotyping and phylogenetic analyzes, it is concluded that the epidemiology of rabies is complex in the semiarid of Paraíba, with different viral variants being maintained in domestic dogs, foxes, insectivorous bats and vampire bats. All the isolates examined belong to the genotype I of the genus Lyssavirus and it is possible to state that in the region, foxes are important sylvatic reservoirs of the rabies virus.

No semiárido do Estado da Paraíba, a vacinação antirrábica não é comum, a maioria dos habitantes locais que lidam com os animais não conhece a incidência da doença na região. Neste estudo, amostras do cérebro de raposas (Pseudalopex vetulus), de morcegos insetívoros (Molossus molossus), de guaxinins (Procyon cancrivorous) e de animais domésticos foram submetidas ao diagnóstico da raiva, pela técnica de imunofluorescência direta (IFD) e inoculação intracerebral em camundongos (ICC). Dos 581 materiais examinados, 50 (8,60%) foram positivos para IFD e 47 (8,09%) para o ICC. Das amostras positivas para raiva, os RNAs foram extraídos e transformados em DNA, no Laboratório de Raiva/Faculdade de Medicina Veterinária e Zootecnia/USP, SP. A caracterização filogenética do gene N foi realizada no Centro de Investigação Veterinária, Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Ciências Bioresource, Nihon University, Fujisawa, Kanagawa, Japão. Com base nos resultados das análises filogenéticas e genotipagem, conclui-se que a epidemiologia da raiva é complexa no semiárido da Paraíba, com diferentes variantes virais sendo mantidas em cães domésticos, raposas, morcegos insetívoros e morcegos hematófagos. Todos os isolados analisados pertencem ao genótipo I do gênero Lyssavirus, e é possível afirmar que, na região, as raposas são importantes reservatórios silvestres do vírus da raiva.

Caracterização genética e distribuição geográfica do vírus rábico isolado de bovinos no estado de Mato Grosso, Brasil / Genetic characterization and geographic distribution of rabies virus isolates from cattle in Mato Grosso, Brazil

Foram caracterizados, geneticamente e geograficamente, o sequenciamento parcial da nucleoproteína (gene N) de 53 isolados do vírus da raiva (VR) originários do Estado de Mato Grosso, Brasil. Os isolados de bovinos, que se encontravam no grupo do VR relacionado a morcegos hematófagos, foram posteriormente subdivididos em sete subgrupos genéticos. Estes subgrupos foram distribuídos em regiões de terras planas, com alguns subgrupos separados por formações de pequenas montanhas e hidrografia. Estes resultados indicam que a raiva em bovinos é derivada de diversas variantes regionalmente definidas, o que sugere que sua distribuição geográfica está relacionada as populações de morcegos hematófagos.

A total of 53 rabies virus (RV) isolates originating from cattle in the state of Mato Grosso, Brazil, were genetically characterized. Partial nucleoprotein gene sequences of these isolates were phylogenetically and geographically analyzed. Cattle isolates, which clustered with the vampire bat related RV group, were further subdivided into 7 subgroups. These subgroups were distributed widely in lowland regions, with some subgroups separated from each other by small mountains and hydrographical features. These results indicate that cattle rabies is derived from several regionally-defined variants, which suggests that its geographical distribution is related to that of the vampire bat population.

CARACTERIZAÇÃO GENÉTICA E DISTRIBUIÇÃO GEOGRÁFICA DO VÍRUS RÁBICO ISOLADO DE BOVINOS NO ESTADO DE MATO GROSSO, BRASIL

ABSTRACT A total of 53 rabies virus (RV) isolates originating from cattle in the state of Mato Grosso, Brazil, were genetically characterized. Partial nucleoprotein gene sequences of these isolates were phylogenetically and geographically analyzed. Cattle isolates, which clustered with the vampire bat related RV group, were further subdivided into 7 subgroups. These subgroups were distributed widely in lowland regions, with some subgroups separated from each other by small mountains and hydrographical features. These results indicate that cattle rabies is derived from several regionally-defined variants, which suggests that its geographical distribution is related to that of the vampire bat population.

RESUMO Foram caracterizados, geneticamente e geograficamente, o sequenciamento parcial da nucleoproteína (gene N) de 53 isolados do vírus da raiva (VR) originários do Estado de Mato Grosso, Brasil. Os isolados de bovinos, que se encontravam no grupo do VR relacionado a morcegos hematófagos, foram posteriormente subdivididos em sete subgrupos genéticos. Estes subgrupos foram distribuídos em regiões de terras planas, com alguns subgrupos separados por formações de pequenas montanhas e hidrografia. Estes resultados indicam que a raiva em bovinos é derivada de diversas variantes regionalmente definidas, o que sugere que sua distribuição geográfica está relacionada as populações de morcegos hematófagos.

A unique substitution at position 333 on the glycoprotein of rabies virus street strains isolated from non-hematophagous bats in Brazil.

The amino acid R or K at position 333 on the glycoprotein of the rabies virus is considered necessary for virulence in adult mice. Although some exceptions exist, substitution at this position causes expression of a phenotype that is either less pathogenic or non-virulent. To date, such substitutions have only been found in fixed strains of rabies virus. In this study, the authors found 333H, 333N, and 333Q substitutions at this position in rabies virus street strains isolated from non-hematophagous bats in Brazil. These strains showed pathogenicity and lethality on passage using adult mice with the intracerebral route and were confirmed rabies-positive by immunofluorescent assay. This suggests that these strains maintain virulence. Our findings indicate that rabies virus street strains with these substitutions exist in the field and may result in infection cycles.

Genetic diversity of bat rabies viruses in Brazil.

Thirty-three Brazilian bat rabies viruses (RVs) were studied by sequence analysis and were compared against sequences of bat-related RVs from other regions of the Americas. Phylogenetic analysis revealed that bat-related RVs formed several monophyletic lineages and that these were associated with bat species. Brazilian bat RVs were found to include nine major lineages, one of which grouped with RVs isolated from Lasiurus spp. from different regions of the Americas. These results suggest that there is considerable diversity among Brazilian bat RV variants and that some of these RV variants may be associated with bats from other countries.

Molecular epidemiology of rabies from Maranhão and surrounding states in the northeastern region of Brazil.

Although many outbreaks of rabies have been reported in northern Brazil, few epidemiological studies of these outbreaks have been undertaken. In this study, molecular epidemiological analyses were performed using 41 rabies virus samples isolated in the Maranhão (MA), Pará (PA), and Tocantins (TO) states of northeastern Brazil. A 599-bp region of the glycoprotein (G) gene was first amplified from each sample by RT-PCR, then sequenced and subjected to phylogenetic analysis. A phylogenetic tree divided the 41 isolates into two clades: Clade I was associated with terrestrial carnivores and Clade II was associated with vampire bats. The Clade I isolates were further sub-divided into two groups. The first group was closer to carnivore isolates that predominate in central Brazil, whereas the second group more closely resembled wild fox isolates from the northeastern coastal state of Paraíba (PB). MA isolates of Clade II formed an entirely separate group. These results demonstrate that bat- and dog-transmitted rabies occur in northwestern Brazil.

Genetic and phylogenetic characterization of rabies virus isolates from wildlife and livestock in Paraiba, Brazil.

Thirty-four rabies virus (RV) isolates from foxes (8), insectivore bats (9), cattle (14), sheep (1), a goat (1) and a donkey (1) from Paraiba state, northeastern Brazil, were genetically characterized. Sequences of 890 nts of nucleoprotein (N) genes of these isolates were analyzed and compared with those of other Brazilian isolates characterized earlier. Phylogenetic analysis revealed three genetical lineages of RV co-existing in this region. Each lineage was found to be associated with particular host species and to circulate independently of each other. The first lineage was found in foxes (Dusicyon sp.) and could be discriminated from domestic carnivore isolates from Sao Paulo, Goias and Minas Gerais in the southern and central Brazil. The second lineage was associated with insectivorous bats (Molossus spp.) and differed from vampire bat-associated RV isolates. The third lineage was found in livestock and clustered with vampire bat-associated RV isolates from Sao Paulo, Tocantins, Goias and Matto Grosso. These results indicate that RV of these genetic lineages are cocirculating in the Paraiba state and that livestock in this region are infected with vampire bat-associated RV, suggesting that the vampire bat is the main reservoir of livestock rabies in this region.

Genetic characterization and geographic distribution of rabies virus isolates in Brazil: identification of two reservoirs, dogs and vampire bats.

We analyzed 50 rabies virus samples isolated in Brazil from 12 dogs, 11 cats, 5 vampire bats, 15 cattle, 2 horses, 1 pig, 1 sheep, and 3 humans to investigate the molecular epidemiology of rabies viruses. We sequenced 203 nucleotides on the nucleoprotein gene by direct sequencing of the PCR-amplified products. All the isolates belonged to the genotype 1 and homology of the 203 nucleotides was at least 83.7% among isolates. The main reservoirs were estimated based on the homology of nucleotide sequences. Brazilian rabies virus isolates were clustered into two reservoir groups: dogs and vampire bats. All the dog-related rabies virus isolates showed nucleotide homology greater than 99.0%. Vampire bat-related rabies virus isolates showed nucleotide homology greater than 96.6% and could be further divided into subgroups corresponding to areas where viruses were isolated. These data suggest that circulating rabies variants belong to at least two different genotype clusters in Brazil and that these two clusters are maintained independently among vampire bats and dogs.

Detection of rabies virus RNA isolated from several species of animals in Brazil by RT-PCR.

Brain samples from different animal species including humans: five vampire bats, 14 cattle, 12 dogs, 11 cats, two horses, one pig, one sheep and three humans collected from various geographical regions of Brazil were found to be positive for rabies by means of the fluorescent antibody test (FAT) and the mouse inoculation test (MIT). The brain samples were retested for rabies by means of the reverse transcription and polymerase chain reaction (RT-PCR) with 2 primer sets (P1/P2 and RHNI/RHNS3), which amplified full or partial regions on the nucleoprotein (N) gene of the rabies virus, respectively. Brain samples from five vampire bats, 13 cattle, one horse and one sheep failed to yield PCR products when the RHN1/RHNS3 primer pair was used, but all brain samples successfully yielded the products when the P1/P2 primer pair was used. These results suggest that Brazilian rabies virus isolates could be principally divided into two populations according to genetic difference.