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1.
Rev Sci Instrum ; 94(8)2023 Aug 01.
Article in English | MEDLINE | ID: mdl-38065145

ABSTRACT

The photoelectron momentum microscope (PMM) in operation at BL6U, an undulator-based soft x-ray beamline at the UVSOR Synchrotron Facility, offers a new approach for µm-scale momentum-resolved photoelectron spectroscopy (MRPES). A key feature of the PMM is that it can very effectively reduce radiation-induced damage by directly projecting a single photoelectron constant energy contour in reciprocal space with a radius of a few Å-1 or real space with a radius of a few 100 µm onto a two-dimensional detector. This approach was applied to three-dimensional valence band structure E(k) and E(r) measurements ("stereography") as functions of photon energy (hν), its polarization (e), detection position (r), and temperature (T). In this study, we described some examples of possible measurement techniques using a soft x-ray PMM. We successfully applied this stereography technique to µm-scale MRPES to selectively visualize the single-domain band structure of twinned face-centered-cubic Ir thin films grown on Al2O3(0001) substrates. The photon energy dependence of the photoelectron intensity on the Au(111) surface state was measured in detail within the bulk Fermi surface. By changing the temperature of 1T-TaS2, we clarified the variations in the valence band dispersion associated with chiral charge-density-wave phase transitions. Finally, PMMs for valence band stereography with various electron analyzers were compared, and the advantages of each were discussed.

2.
Dis Aquat Organ ; 76(2): 113-21, 2007 Jun 29.
Article in English | MEDLINE | ID: mdl-17760384

ABSTRACT

Edwardsiella tarda is a broad host-range pathogen infecting both animals and humans. E. tarda isolates from red sea bream Pagrus major are non-motile, whereas isolates from Japanese eel Anguilla japonica and Japanese flounder Paralichthys olivaceus are motile with peritrichous flagella. We compared the fliC gene coding for flagellin (FliC) in motile and non-motile E. tarda strains isolated from diseased fish. Twenty-two amino acid residues differed in the predicted FliC amino acid sequences between non-motile and motile strains. There were no significant differences either in the upstream sequences regulating transcription of the fliC gene or in the fliC transcript levels between motile and non-motile strains. The predicted secondary structure of FliC in non-motile E. tarda differed from that of motile strains, and the modeled data suggested that the secondary structure may be the important factor responsible for non-flagellation in the non-motile strains.


Subject(s)
Edwardsiella tarda/genetics , Flagella/genetics , Flagellin/genetics , Genes, Bacterial/genetics , Movement/physiology , Amino Acid Sequence , Animals , Base Sequence , Carbohydrate Metabolism/physiology , Edwardsiella tarda/physiology , Edwardsiella tarda/ultrastructure , Enterobacteriaceae Infections/microbiology , Enterobacteriaceae Infections/veterinary , Escherichia coli/genetics , Fish Diseases/microbiology , Flagellin/analysis , Flagellin/biosynthesis , Flounder/microbiology , Gene Expression Regulation, Bacterial , Genes, Bacterial/physiology , Molecular Sequence Data , Open Reading Frames/genetics , Protein Structure, Secondary , Recombinant Proteins/analysis , Recombinant Proteins/biosynthesis , Recombinant Proteins/metabolism , Sea Bream/microbiology , Sequence Alignment , beta-Galactosidase/analysis , beta-Galactosidase/metabolism
3.
Toxicon ; 50(6): 779-90, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17698158

ABSTRACT

A total of 50 bacterial isolates was obtained from the copepod Pseudocaligus fugu, which is a common parasite, collected from the body surface of the panther puffer Takifugu pardalis. On the basis of colony characteristics, these bacterial isolates were grouped into six types, of which only two (Types-I and -II) showed a high affinity for adhesion to the carapace of the banana shrimp Penaeus merguiensis. These two types of adhesive bacteria were identified through 16S rRNA sequence analysis as Shewanella woodyi (Type-I) and Roseobacter sp. (Type-II). Representative isolates of these two adhesive bacteria were examined for tetrodotoxin (TTX) production by high-performance liquid chromatography (HPLC)-fluorometric system, gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-mass spectrometry (LC-MS). It was rather unexpectedly revealed that TTX and anhydroTTX were present in the supernatant of culture of the Type-II isolate Roseobacter sp.


Subject(s)
Copepoda/microbiology , Roseobacter/isolation & purification , Shewanella/isolation & purification , Takifugu/parasitology , Tetrodotoxin/metabolism , Animals , Base Sequence , Chromatography, High Pressure Liquid , Copepoda/physiology , Copepoda/ultrastructure , Culture Media, Conditioned/chemistry , Female , Fluorometry , Gas Chromatography-Mass Spectrometry , Host-Parasite Interactions , Microscopy, Electron, Scanning , Molecular Sequence Data , RNA, Bacterial/analysis , RNA, Ribosomal, 16S/analysis , Roseobacter/genetics , Roseobacter/metabolism , Roseobacter/ultrastructure , Shewanella/genetics , Shewanella/metabolism , Shewanella/ultrastructure , Skin/parasitology , Tetrodotoxin/analysis
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