1.
J Comput Chem
; 36(26): 1973-7, 2015 Oct 05.
Article
in English
| MEDLINE
| ID: mdl-26339759
ABSTRACT
We have developed a novel method for calculation of the water bridges that can be formed in the active sites of proteins in the absence or in the presence of small-molecule ligands. We tested its efficiency on a representative set of human ATP-binding proteins, and show that the docking accuracy of ligands can be substantially improved when water bridges are included in the modeling of protein-ligand interactions. Our analysis of binding pocket hydration can be a useful addition to the in silico approaches of Drug Design.