Evaluation of sire predicted transmitting abilities for evidence of X-chromosomal inheritance in north american sire families.

This study tested for differences between genetic merits of sons and daughters of sires and for evidence of segregating quantitative trait loci on the X chromosomes of North American Holsteins. Son PTA adjusted for sire PTA was used as the dependent variable to test for biases and for genes that were passed from sire to daughter but not to son. The test of variability across sires of sons merely indicated an unaccounted source of variation, for which genes on X chromosomes might be responsible. Critical values for this test and power were determined by simulation for a variety of populations and traits differing in heritability, size of the X chromosome effect, and allelic frequency. Simulated genes on the X chromosome were detected with high power at intermediate frequencies of the favorable allele. The power of the test increased as the size of the effect increased and as genetic variance attributed to autosomes decreased. The test was then applied to recently evaluated data from US and Canadian Holstein populations. Genetic evaluations for >17,000 bulls from the US and >9000 from Canada were included. Results suggested that little extra variation was present for some traits formally evaluated in North America, but that genes on the X chromosome were unlikely to be the cause.

Comparison of methods for genetic evaluation of sires for survival of their daughters in the first three lactations.

Several approaches for analysis of survival in the first three lactations were compared using data from approximately 700,000 Canadian Holsteins. Two approaches (linear model and threshold model) were used to analyze a binary measure of survival. Other approaches were survival analyses to evaluate two measures of the number of days that cows were in milk during their first three lactations. One measure restricted days per lactation to < or = 305; the other was based on the actual number of days in milk without an upper limit on days per lactation. Variance components and breeding values (EBV) were estimated. Sire models were used almost exclusively, but one set of EBV was obtained using a linear animal model. Effects in the models were herd-year of calving, age at first calving, interaction of several factors related to herd, and production. Thus, all EBV were for functional herd life. Heritabilities were approximately 0.04, 0.07, and 0.10 from linear, threshold, and survival analyses, respectively. Correlations among sire EBV from all analyses using sire models were high, particularly for linear and threshold models (0.98). In contrast, correlations of EBV from sire models with EBV from the linear animal model were less than 0.90, regardless of the approach taken. In Canada, the current linear animal model remains in use for sire evaluation of herd life, but research with survival analyses will continue.

Genetic evaluation for herd life in Canada.

Methods were developed for the national genetic evaluation of herd life for Canadian Holstein sires. The genetic evaluations incorporate information from survival (direct herd life) and information from conformation traits that are related to herd life (indirect herd life) after adjustment for production in first lactation to remove the effect of culling for production. Direct genetic evaluations for herd life were based on survival in each of the first three lactations, which was analyzed using a multiple-trait animal model. Sire evaluations thus obtained for survival in each of the first three lactations were combined based on their economic weights into an overall sire evaluation for direct herd life. Sire evaluations for indirect herd life were based on an index of sire evaluations for mammary system, feet and legs, rump, and capacity. A multiple-trait sire model based on multiple-trait across country evaluation methodology was used to combine direct and indirect genetic evaluations for herd life into an overall genetic evaluation for herd life. Sire evaluations for herd life were expressed in estimated transmitting ability as the number of lactations and represent expected differences among daughters in functional herd life (number of lactations); the average functional herd life was set equal to three lactations. Estimated transmitting abilities were normally distributed and ranged from 2.31 to 3.43 lactations.

Effects of interactions between type and milk production on survival traits of Canadian Holsteins.

Effects of the interaction between type and production on two measures of functional herd life were examined for Canadian Holsteins. Data were records of survival through first lactation for 1,153,706 cows and number of lactations initiated (maximum of five lactations) for 705,930 cows. Survival data were regressed on ETA for type traits of the sire of each cow after the cows were assigned to groups with low, medium, or high production. Survival through first lactation was analyzed with a threshold model. Factors in the model included herd-year-season; age at calving; month of calving; interaction of registry status, change in herd size, and season; fat and protein production; and linear regressions of sire ETA for type within each production class. Numbers of lactations were analyzed with a linear model that also included month of last calving. Overall conformation and udder traits had the largest effects on survival through first lactation. Effects on number of lactations for feet and leg traits were about the same as for udder traits. Interactions were significant. Type traits were relatively unimportant for herd life of low producing cows. Few differences were observed in the relationships between herd life and type for medium versus high producing cows, indicating no need to increase the emphasis on type in response to current trends for greater production.

Correlations between first lactation and lifetime performance traits of Canadian Holsteins.

Data on 82,835 Holstein cows, daughters of 703 sires and with first calvings from 1979 to 1984 in 2384 herds enrolled in Quebec Dairy Herd Analysis Service, were analyzed for relationships of first lactation traits with traits for partial and total lifetime performance using multitrait REML methodology and a linear mixed model. Effects of herd-year-season, age at first calving, and proven sires were considered to be fixed, and effects of young sires and residuals were considered to be random. All known additive genetic relationships among sires were accounted for in construction of the relationship matrix. Individual lactation records were precorrected for the fixed effect of year and month of calving before lifetime totals were calculated. Each cow was given at least a 5-yr opportunity for production. All genetic and phenotypic correlations were positive except correlations of first lactation percentage traits. Correlations with partial lifetime performance were highest. Genetically, first lactation milk yield was highly correlated with most measures of lifetime performance, .64 to .92; correlations with measures of longevity were relatively smaller. Given high positive genetic correlations, selection singly on first lactation milk yield will improve all measures of lifetime performance; however, some measure of longevity should be considered in selection programs of dairy cattle.

Relationships between sire genetic evaluations for conformation and functional herd life of daughters.

Linear and nonlinear relationships between functional herd life and conformation traits were investigated by regression of functional herd life of 63,602 Quebec Holstein cows on the estimated transmitting abilities of their sires for conformation traits. Relationships with functional herd life were obtained by inclusion in regression models of covariants for the deviations of cows in production of milk and fat. Individual conformation traits had low to moderate genetic relationships with functional herd life. Relationships were strongest for traits associated with udder conformation and feet and legs, and relationships were stronger for registered than for grade herds. Nonlinear relationships were present for some traits. Indexes to predict estimated transmitting ability of sires for functional herd life, based on combinations of estimated transmitting abilities of sires for conformation traits, explained .3 to .8% of phenotypic variation in functional herd life, which, for a heritability of functional herd life of .08, amounts to 15 to 40% of genetic variation in functional herd life. For registered herds, unlike grade herds, composite traits provided significant information on functional herd life and linear conformation traits. Correlations between indexes of conformation traits to predict estimated transmitting abilities of sires for functional herd life for registered versus grade herds were low to moderate. Selection for functional herd life based on conformation traits is possible but has moderate efficiency because of low to moderate relationships between conformation traits and functional herd life.

Multitrait restricted maximum likelihood estimates of genetic and phenotypic parameters of lifetime performance traits for Canadian Holsteins.

Data on 82,835 Holstein cows, daughters of 703 sires and with first calving from September 1979 to December 1984 from 2384 herds enrolled in the Quebec Dairy Herd Analysis Service, were used to estimate genetic and phenotypic parameters of partial and total lifetime performance traits with REML. The model included herd-year-season of first calving, age at first calving, and proven sires as fixed effects and young sires and residuals as random effects. Individual lactation records were precorrected for year-month of calving before lifetime totals were calculated. Only cows with at least 5 yr of opportunity for production were analyzed. The ranges of heritability estimates were .11 to .13 for lifetime production and profit, .07 to .09 for measures of longevity, and .28 to .32 for yield per day of productive life. Correlations among total lifetime yield and profit traits and among measures of longevity were > or = .93. Genetic and phenotypic correlations, respectively, of early partial (two parities total) with total life-time yield and profit and longevity traits ranged from .81 to .94 and .66 to .78. Selection on early performance seems to be desirable and, given the high positive genetic correlations, should increase both lifetime yield and longevity.

Genetic parameters of lifetime performance traits in Holstein cows.

SUMMARY: Heritabilities, genetic and phenotypic correlations among lifetime yields of milk, fat and protein, herdlife, productive life and number of lactations initiated in the herd were estimated from records of 44,933 progeny of 427 young and 119 proven Holstein sires in 1949 herds using a multivariate Reml technique to fit a sire model with relationships among young sires. Proven sires were fitted as fixed effects. Heritabilities of lifetime traits ranged from 0.005 to 0.030, suggesting little scope for direct selection for lifetime performance traits. Productive life had highest genetic correlation with lifetime fat yield (0.934), but correlations with lifetime milk and protein yields were smaller and similar (0.773 and 0.772). The number of lactations also had highest genetic correlation with lifetime fat yield. ZUSAMMENFASSUNG: Genetische Parameter von Lebensleistungsmerkmalen bei Holsteinkühen Heritabilitätswerte, genetische und phänotypische Korrelationen zwischen Lebensleistungsmerkmalen für Milch, Fett und Protein, Lebensdauer, produktive Zeit und Zahl Laktationen wurden won 44933 Nachkommen von 427 jungen und 119 nachkommenschaftsgeprüften Holsteinstieren in 1949 Herden mittels einer multivariablen REML-Technik geschätzt, die auf einem Vatertiermodell mit Verwandtschaft zwischen den jungen Stieren beruhte. Geprüfte Stiere wurden als fixe Effekte im Modell berücksichtigt. Heritabilitätswerte dieser Merkmale rangieren von 0.005 bis 0.03, so daß wenig Aussichten für Erfolg direkter Selektion auf Lebensleistungsmerkmale besteht. Die Länge des produktiven Lebens hatte die höchste genetische Korrelation mit Lebensfettmenge (0.934), aber die Korrelationen mit Milch- und Protein-Lebensleistung waren kleiner und ähnlich (0.773 und 0.772). Die Zahl der Laktationen hatte die höchste genetische Korrelation mit der Lebensfettmenge.

Genetic correlations between lifetime production and linearized type in Canadian Holsteins.

Genetic and phenotypic correlations were estimated between 6 lifetime production and 28 linearized type traits using REML. The data set contained 34,322 cows, each with a record for all 34 traits. The analyses accounted for the fixed effects of herd, year-month, classifier, age at first calving, and stage of lactation. Heritabilities were low for lifetime traits and moderate for most type traits except stature, size, capacity, thurl width, and pin setting, which had high heritabilities. Most phenotypic correlations between lifetime production and type were in the range of .15 to .20 except for capacity, rump, and feet and legs, which were around .07. Genetic correlations were strong between lifetime production and angularity (.44 to .55) and dairy character (.53 to .56). Genetic correlations were low to moderate between life-time production and stature (.14 to .25), size (.07 to .18), texture (.19 to .26), style (.11 to .27), head (.15 to .23), pin setting (.10 to .16), rear udder (.19 to .25), and rear attachment (.10 to .22). The only notable negative genetic correlations were lifetime production with rear heel (-.16 to -.27), thurl width (-.18 to -.24), and fore udder (-.05 to -.11).