Multiple anomalies in wild-caught fish species Curmuca barb Hypselobarbus curmuca (Hamilton 1807) (Cyprinidae:Cypriniformes) from the Western Ghats of India.

Fish of the genus Hypselobarbus (Bleeker 1860) are widely dispersed in the rivers of the Western Ghats in India and endemic to southern Indian peninsular freshwaters. These are small- to medium-sized fishes of the family Cyprinidae. Although fish with deformed bodies or body parts are rare in natural waters, this article deals with four abnormal specimens of Hypselobarbus curmuca (Hamilton 1807) collected from the rivers Tunga, Bhadra, and Kali during 2022. The abnormalities observed in four different individuals are pughead deformity, pelvic fin deformity, pectoral fin deformity, and enlarged scales. The morphological comparison of normal individuals of Hypselobarbus curmuca (Hamilton 1807) with abnormal specimens revealed variation. Using the MT-COI gene, species identity was confirmed and the mean genetic divergence between the normal and abnormal specimens was estimated to be less than 1%.

Assessing the trophic status of a tropical microtidal estuary applying TRIX and Random Forest - A combined approach.

The present study assessed the trophic status of a medium-sized microtidal estuary, Rushikulya, India using a combination of mutimetric trophic indices (TRIX, TRBIX) and a machine learning approach (Random Forest). A total of 108 samples were considered to build a predictive model for chlorophyll a (Chl a) and 17 response water variables by observing two annual periods (2021-2023) at six sampling sites. Mean values of TRIX (5.04 ± 0.72) and TRBIX (0.17 ± 0.08) reflected that the estuary has a moderate degree of eutrophication with 'good' water quality and 'biomass saturated'. However, the threshold of TRIX represents a transition state from 'moderate' to 'high' eutrophic. Random Forest model reflected that no apparent association between Chl a and water turbidity above 30 NTU and eutrophication in the estuary fluctuated mainly due to PO43--P along with electrical conductivity. Linear statistical correlations showed high correlation between Chl a and conductivity and a negative correlation between Chl a and dissolved oxygen, unlike PO43--P.

Study of feeding biology and diet-associated microplastic contamination in selected creek fishes of northeastern Arabian Sea: A multi-species approach.

This study investigated the diet composition and microplastic contamination in six fish species collected from the creek area of northeastern Arabian Sea. The results show that the diet of the fish is mainly composed of shrimps, algae, fish, and zooplankton, with microplastics constituting up to 4.83 % (Index of Preponderance) of their diet. The average abundance of microplastics ranges from 5.82 to 7.69 items per fish, and their ingestion is influenced by seasonal variation, gut fullness, and trophic level. Microplastic contamination has no significant effect on the condition factor and hepatosomatic index of the fish species. However, polymer hazard index indicates that microplastic pollution in fish is associated with a low to high risk factor, which might cause potential harm to aquatic lives and higher vertebrates via food chain. Therefore, this study highlights the need for immediate attention and effective regulations to reduce microplastic pollution to protect marine life.

The identity and distribution of striped bagrid catfish, Mystus tengara (Hamilton 1822) revealed through integrative taxonomy.

BACKGROUND: The taxonomic status and geographical distribution of M. tengara are vague. No genetic diversity and phylogenetic study have been done till now to resolve its identity and distribution. In the present study, an integrated taxonomic approach has been applied to clarify the taxonomic status, identity, and distribution of bagrid catfish, Mystus tengara. METHODS AND RESULTS: Comparative morphometric evaluation of M. tengara identified in the present study from distant geographical locations revealed variations of the traits in response to body length and environment, without significant genetic distance. The observed morphometric traits of M. tengara were found to be overlapping with available morphometric traits of M. tengara, M. carcio and M. vittatus. Maximum likelihood and Bayesian phylogenetic analysis based on mitochondrial cytochrome c oxidase (COI) gene also could not resolve their identity, and five paraphyletic clades comprising of M. tengara, M. vittatus, and M. carcio from India, Nepal, and Bangladesh were observed. Morphological and genetic evidence along with comparative evaluation of M. tengara, from its type locality, we consider M. tengara identified in the present study to be true, with its distribution extending from North East India to West Bengal, North India, Central India, Northern peninsular India, and Bangladesh. CONCLUSION: The observation of paraphyletic subclades and evaluation of genetic distance between subclades reveals the presence of four cryptic species. Further confirmation on the identity of M. vittatus and M. carcio, by an integrated taxonomic approach based on fresh specimens collected from the type locality, is required.

A new species of Stolephorus (Clupeiformes: Engraulidae) from the Bay of Bengal, India.

A new fish species, Stolephorus tamilensis sp. nov., is described from the East coast of India. The major distinguishing characters are 5-6 small needle-like pre-pelvic scutes on belly; maxilla tip pointed, reaching to border of operculum, concave and indented in the preoperculum; 25-28 gill rakers on lower lobe of the first branchial arch; dorsal fin without spine; 17-19 anal-fin rays. Moreover, S. tamilensis sp. nov. present higher average genetic divergence values at mitochondrial cytochrome c oxidase subunit I and 16S rDNA loci in comparison with congeners. Also, nucleotide diagnostic characters exclusive to S. tamilensis are identified. Neighbor-joining analysis revealed close relation between S. tamilensis  and S. andhraensis.

Effect of environment on spatio-temporal structuring of fish assemblages in a monsoon-influenced tropical estuary.

This study analyzes the trophic structure of fish assemblages in a well-mixed tropical estuary, Zuari, located in southwest coast of India. A total of 224 fish species were collected between September 2013 and August 2016 from 324 sampling events from 9 sampling stations using surface and bottom set gillnets. The sampling events were designed to cover three major seasons such as the pre-monsoon, monsoon, and post-monsoon. For each sampling event, abiotic variables such as temperature, salinity, dissolved oxygen, and transparency of the water were recorded. The data obtained for abundance of fish species was subjected to cluster analysis and non-metric multidimensional scaling. The results defined six spatio-temporally varying groups (clusters) within Zuari estuary. Canonical correspondence analysis demonstrated that temperature, salinity, dissolved oxygen, and transparency were important in determining the fish assemblages in Zuari. The estuarine resident species were abundant in the inner zone (riverine side) of the estuary, where the salinity and temperature recorded lower dimensions compared to middle and outer zones (marine side). However, the inner shallow zone of the estuary was not a preferred habitat for the migrating marine species. Majority of the fish species preferred middle and outer zones and post-monsoon and pre-monsoon seasons for inhabiting the estuary. The present study furnishes a reference data for the spatio-temporal dynamics of fish assemblages in tropical monsoonal estuaries.

Baseline radionuclide concentration in selected marine organisms around the coastal areas of Ratnagiri and Sindhudurg districts, west coast of Maharashtra, India.

The present work deals with assessment of baseline radionuclide concentration in marine organisms around selected coasts of Maharashtra, India. This baseline study highlights concentrations of natural and fallout radionuclides in finfish and shellfish species found in the surrounding seawater. Water and fish samples were collected, processed, and analyzed for 238U, 226Ra, 228Ra, 232Th, 40K, and 137Cs by high-resolution gamma spectrometry. 238U, 226Ra, 228Ra, 232Th, 40K, and 137Cs concentrations were found to be in the range of ≤1.5, ≤2.0, ≤0.4, ≤1.5, ≤8.0 to 258, and ≤0.2 Bq/kg, respectively. The seasonal study revealed the maximum concentration in premonsoon season. Activity concentrations were higher in pelagic fish than those in demersal fish. A higher concentration factor was reported in shellfish than in finfish.

DNA barcoding of elasmobranchs from Indian coast and its reliability in delineating geographically widespread specimens.

Identification of elasmobranchs by conventional taxonomy is difficult due to similarities in morphological characters. Species-specific molecular markers are good choice for identifying species irrespective of it's life stage. Recently, mitochondrial cytochrome c oxidase subunit I (COI) gene got global recognition as a barcode gene to discriminate all animals up-to species level. In this study, mitochondrial COI partial gene was used to develop DNA barcodes for 18 species of elasmobranchs (10 species of sharks and 8 species of rays). The COI barcodes clearly distinguished all the species with high interspecific distance values than intraspecific values. The average interspecific and intraspecific distance values are 8.6% and 0.3% for sharks, respectively and 12.4% and 0.63% for rays, respectively using K2P method. The Neighbor-Joining tree showed distinct clusters shared by the species of same genera. The COI barcodes were also used to estimate allopatric divergences for selected species across broad geographical locations and found that Sphyrna lewini, Aetobatus narinari and Neotrygon kuhlii have cryptic diversity.

DNA barcoding of gobiid fishes (Perciformes, Gobioidei).

Gobiids constitute a major proportion of fish population in both tropical and temperate freshwater as well as marine ecosystem. Due to their small size, cryptic ecology and ambiguous morphological characters, gobiids diversity was not documented completely. In this study, DNA barcodes were generated for 11 species of gobiids, collected from the Ashtamudi Lake, India. The mitochondrial COI gene was amplified using universal primers and the resulted 650 bp amplicon was sequenced. The COI barcodes clearly distinguished all the species with high inter-specific genetic distance values than intra-specific values based on K2P (Kimura 2 Parameter) model. The average genetic distance (K2P model) within species, genus and family was 1.2%, 22.2% and 25.3%, respectively. In addition to barcode-based species identification system, Nucleotide Diagnostic (ND) characters specific for species were identified. The Neighbor-Joining tree revealed distinct clusters shared by the species of same genera.

Molecular phylogeny of elasmobranchs inferred from mitochondrial and nuclear markers.

The elasmobranchs (sharks, rays and skates) being the extant survivors of one of the earliest offshoots of the vertebrate evolutionary tree are good model organisms to study the primitive vertebrate conditions. They play a significant role in maintaining the ecological balance and have high economic value. Due to over-exploitation and illegal fishing worldwide, the elasmobranch stocks are being decimated at an alarming rate. Appropriate management measures are necessary for restoring depleted elasmobranch stocks. One approach for restoring stocks is implementation of conservation measures and these measures can be formulated effectively by knowing the evolutionary relationship among the elasmobranchs. In this study, a total of 30 species were chosen for molecular phylogeny studies using mitochondrial cytochrome c oxidase subunit I, 12S ribosomal RNA gene and nuclear Internal Transcribed Spacer 2. Among different genes, the combined dataset of COI and 12S rRNA resulted in a well resolved tree topology with significant bootstrap/posterior probabilities values. The results supported the reciprocal monophyly of sharks and batoids. Within Galeomorphii, Heterodontiformes (bullhead sharks) formed as a sister group to Lamniformes (mackerel sharks): Orectolobiformes (carpet sharks) and to Carcharhiniformes (ground sharks). Within batoids, the Myliobatiformes formed a monophyly group while Pristiformes (sawfishes) and Rhinobatiformes (guitar fishes) formed a sister group to all other batoids.

A comparative study on intertidal faunal biodiversity of selected beaches of Mumbai coast.

Comparative study has been done to examine the biodiversity and ecological status of the intertidal region of Tata Institute of Fundamental Research (TIFR), Bandstand and National Centre for Performing Arts (NCPA) rocky beaches in Mumbai, West coast of India. A total of 50 species of intertidal organisms were recorded from these shores. Shannon and Simpson's diversity index, Margalefs richness index and Pielou's evenness index indicated different level of ecological state of the shore in different months. Dendrograms and 2-D non metric MDS ordination from Bray-Curtis similarity matrix of occurrence of intertidal organisms from these sites showed highest similarity and combination pattern of occurrence between Nerita oryzarum and Planaxis sulcatus in TIFR and Bandstand shore. Nerita oryzarum and Tactarius malaccanus at NCPA shore. Abundance/biomass comparison (ABC) method of determining level of disturbance also pointed towards the polluted status of these shores. Study concludes that though these beaches are highly disturbed due to anthropogenic activities, they still support a rich intertidal biodiversity which need immediate attention for protection and conservation.

Assessment of coastal pollution through bioassay and transplantation of intertidal clams.

In the present study, a survey of Mahim creek and Bay area was undertaken that indicated absence of fauna, particularly molluscs from the area, which was a repository in the past. During bioassay experiments of Mahim creek water, the clams G. divaricatum and C. antiquata could not open their valves in 100% creek water and died within 12 hrs of exposure. The 96 hrs LC50 values of Mahim creek water for G. divaricatum and C. antiquata were found to be 20% and 40% respectively during summer and 38% and 57% respectively during rainy season. When two sets of the clams were transplanted at Mahim creek, they died within 12 hrs. These experiments suggest the extreme level of pollution in the area. This level of pollution is responsible for transforming the area into barren locality in terms of fauna, specially the rich molluscan diversity. However, Gorai creek was found to be comparatively very less polluted and it still serves as breeding and nursery ground for various fishes and prawn species. Hence it must be protected and conserved.