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1.
Plant Cell ; 32(4): 820-832, 2020 04.
Article in English | MEDLINE | ID: mdl-32060179

ABSTRACT

Acyl carrier proteins (ACPs) are the scaffolds for fatty acid biosynthesis in living systems, rendering them essential to a comprehensive understanding of lipid metabolism. However, accurate quantitative methods to assess individual acyl-ACPs do not exist. We developed a robust method to quantify acyl-ACPs to the picogram level. We successfully identified acyl-ACP elongation intermediates (3-hydroxyacyl-ACPs and 2,3-trans-enoyl-ACPs) and unexpected medium-chain (C10:1, C14:1) and polyunsaturated long-chain (C16:3) acyl-ACPs, indicating both the sensitivity of the method and how current descriptions of lipid metabolism and ACP function are incomplete. Such ACPs are likely important to medium-chain lipid production for fuels and highlight poorly understood lipid remodeling events in the chloroplast. The approach is broadly applicable to type II fatty acid synthase systems found in plants and bacteria as well as mitochondria from mammals and fungi because it capitalizes on a highly conserved Asp-Ser-Leu-Asp amino acid sequence in ACPs to which acyl groups attach. Our method allows for sensitive quantification using liquid chromatography-tandem mass spectrometry with de novo-generated standards and an isotopic dilution strategy and will fill a gap in our understanding, providing insights through quantitative exploration of fatty acid biosynthesis processes for optimal biofuels, renewable feedstocks, and medical studies in health and disease.


Subject(s)
Acyl Carrier Protein/metabolism , Fatty Acids/metabolism , Tandem Mass Spectrometry/methods , Acyl Carrier Protein/chemistry , Acylation , Amino Acid Sequence , Biosynthetic Pathways , Brassicaceae/metabolism , Chromatography, Liquid , Conserved Sequence , Plant Leaves/metabolism , Seeds/metabolism
2.
Plant Biotechnol J ; 13(5): 675-88, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25418911

ABSTRACT

Poly-3-hydroxybutyrate (PHB) production in plastids of Camelina sativa seeds was investigated by comparing levels of polymer produced upon transformation of plants with five different binary vectors containing combinations of five seed-specific promoters for expression of transgenes. Genes encoding PHB biosynthetic enzymes were modified at the N-terminus to encode a plastid targeting signal. PHB levels of up to 15% of the mature seed weight were measured in single sacrificed T1 seeds with a genetic construct containing the oleosin and glycinin promoters. A more detailed analysis of the PHB production potential of two of the best performing binary vectors in a Camelina line bred for larger seed size yielded lines containing up to 15% polymer in mature T2 seeds. Transmission electron microscopy showed the presence of distinct granules of PHB in the seeds. PHB production had varying effects on germination, emergence and survival of seedlings. Once true leaves formed, plants grew normally and were able to set seeds. PHB synthesis lowered the total oil but not the protein content of engineered seeds. A change in the oil fatty acid profile was also observed. High molecular weight polymer was produced with weight-averaged molecular weights varying between 600 000 and 1 500 000, depending on the line. Select lines were advanced to later generations yielding a line with 13.7% PHB in T4 seeds. The levels of polymer produced in this study are the highest reported to date in a seed and are an important step forward for commercializing an oilseed-based platform for PHB production.


Subject(s)
Brassicaceae/metabolism , Hydroxybutyrates/metabolism , Polyesters/metabolism , Seedlings/metabolism , Seeds/metabolism , Brassicaceae/chemistry , Brassicaceae/genetics , Fatty Acids/chemistry , Fatty Acids/metabolism , Germination , Hydroxybutyrates/chemistry , Organ Specificity , Plant Leaves/chemistry , Plant Leaves/genetics , Plant Leaves/metabolism , Plants, Genetically Modified , Plastids/metabolism , Polyesters/chemistry , Promoter Regions, Genetic/genetics , Seedlings/chemistry , Seedlings/genetics , Seeds/chemistry , Seeds/genetics , Transgenes
3.
Proc Natl Acad Sci U S A ; 111(3): 1204-9, 2014 Jan 21.
Article in English | MEDLINE | ID: mdl-24398521

ABSTRACT

Degradation of unusual fatty acids through ß-oxidation within transgenic plants has long been hypothesized as a major factor limiting the production of industrially useful unusual fatty acids in seed oils. Arabidopsis seeds expressing the castor fatty acid hydroxylase accumulate hydroxylated fatty acids up to 17% of total fatty acids in seed triacylglycerols; however, total seed oil is also reduced up to 50%. Investigations into the cause of the reduced oil phenotype through in vivo [(14)C]acetate and [(3)H]2O metabolic labeling of developing seeds surprisingly revealed that the rate of de novo fatty acid synthesis within the transgenic seeds was approximately half that of control seeds. RNAseq analysis indicated no changes in expression of fatty acid synthesis genes in hydroxylase-expressing plants. However, differential [(14)C]acetate and [(14)C]malonate metabolic labeling of hydroxylase-expressing seeds indicated the in vivo acetyl-CoA carboxylase activity was reduced to approximately half that of control seeds. Therefore, the reduction of oil content in the transgenic seeds is consistent with reduced de novo fatty acid synthesis in the plastid rather than fatty acid degradation. Intriguingly, the coexpression of triacylglycerol synthesis isozymes from castor along with the fatty acid hydroxylase alleviated the reduced acetyl-CoA carboxylase activity, restored the rate of fatty acid synthesis, and the accumulation of seed oil was substantially recovered. Together these results suggest a previously unidentified mechanism that detects inefficient utilization of unusual fatty acids within the endoplasmic reticulum and activates an endogenous pathway for posttranslational reduction of fatty acid synthesis within the plastid.


Subject(s)
Arabidopsis/metabolism , Fatty Acids/biosynthesis , Lipids/chemistry , Acetyl-CoA Carboxylase/metabolism , Endoplasmic Reticulum/metabolism , Feedback, Physiological , Gene Expression Profiling , Gene Expression Regulation, Plant , Oxygen/chemistry , Plant Oils/metabolism , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Plastids/metabolism , Protein Processing, Post-Translational , RNA/metabolism , Seeds/metabolism , Time Factors , Transgenes , Triglycerides/metabolism
4.
Plant Biotechnol J ; 11(6): 759-69, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23551501

ABSTRACT

Camelina (Camelina sativa), a Brassicaceae oilseed, has received recent interest as a biofuel crop and production platform for industrial oils. Limiting wider production of camelina for these uses is the need to improve the quality and content of the seed protein-rich meal and oil, which is enriched in oxidatively unstable polyunsaturated fatty acids that are deleterious for biodiesel. To identify candidate genes for meal and oil quality improvement, a transcriptome reference was built from 2047 Sanger ESTs and more than 2 million 454-derived sequence reads, representing genes expressed in developing camelina seeds. The transcriptome of approximately 60K transcripts from 22 597 putative genes includes camelina homologues of nearly all known seed-expressed genes, suggesting a high level of completeness and usefulness of the reference. These sequences included candidates for 12S (cruciferins) and 2S (napins) seed storage proteins (SSPs) and nearly all known lipid genes, which have been compiled into an accessible database. To demonstrate the utility of the transcriptome for seed quality modification, seed-specific RNAi lines deficient in napins were generated by targeting 2S SSP genes, and high oleic acid oil lines were obtained by targeting FATTY ACID DESATURASE 2 (FAD2) and FATTY ACID ELONGASE 1 (FAE1). The high sequence identity between Arabidopsis thaliana and camelina genes was also exploited to engineer high oleic lines by RNAi with Arabidopsis FAD2 and FAE1 sequences. It is expected that these transcriptomic data will be useful for breeding and engineering of additional camelina seed traits and for translating findings from the model Arabidopsis to an oilseed crop.


Subject(s)
Brassicaceae/genetics , Plant Oils/metabolism , Seed Storage Proteins/metabolism , Seeds/genetics , Transcriptome/genetics , Translational Research, Biomedical , Acyl Coenzyme A/metabolism , Arabidopsis/genetics , Base Sequence , Fatty Acids/biosynthesis , Gene Expression Regulation, Plant , Genes, Plant/genetics , Molecular Sequence Data , Phylogeny , Polymorphism, Single Nucleotide/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Seed Storage Proteins/genetics , Seeds/growth & development
5.
Plant Physiol Biochem ; 49(12): 1448-55, 2011 Dec.
Article in English | MEDLINE | ID: mdl-22078383

ABSTRACT

Cuticular waxes are involved in the regulation of the exchange of gases and water in plants and can impact tolerance to drought. However, the molecular mechanisms of the relationship between wax accumulation and drought tolerance are largely unknown. We applied the methoxyfenozide gene switching system to regulate expression of the WIN1/SHN1 gene (WAX INDUCER 1/SHINE1; At1G15360), a transcriptional activator, to regulate production of cuticular waxes and cutin and followed changes of gene expression, metabolites, and drought tolerance. Treatment with the inducer resulted in expression of the target gene and specific downstream genes, and gradually increased cuticular waxes. Induction of cuticular wax conferred tolerance to drought and recovery from drought, and was correlated with reduced numbers of stomata. Quantitative RT-PCR assays using RNAs from transgenic plants revealed that when expression of the WIN1/SHN1 gene was induced there was increased expression of genes involved in wax development, and reduced expression of selected genes, including SPCH (At5g53210); MUTE (At3g06120); and FAMA (At3g241400); and YODA (At1g63700), each of which is involved in stomatal development. These studies suggest that drought tolerance caused by the induction of WIN1/SHIN gene may be due to reduced numbers of stomata as well as to cuticular wax accumulation.


Subject(s)
Adaptation, Physiological , Arabidopsis/physiology , Droughts , Plant Epidermis/metabolism , Plant Stomata/growth & development , Transcription Factors/metabolism , Waxes/metabolism , Adaptation, Physiological/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Gene Expression Regulation, Plant , Genes, Plant , Membrane Lipids/biosynthesis , Stress, Physiological/genetics , Transcription Factors/genetics
6.
Plant Cell ; 23(3): 1061-81, 2011 03.
Article in English | MEDLINE | ID: mdl-21421810

ABSTRACT

Sphingolipid synthesis is initiated by condensation of Ser with palmitoyl-CoA producing 3-ketodihydrosphinganine (3-KDS), which is reduced by a 3-KDS reductase to dihydrosphinganine. Ser palmitoyltransferase is essential for plant viability. Arabidopsis thaliana contains two genes (At3g06060/TSC10A and At5g19200/TSC10B) encoding proteins with significant similarity to the yeast 3-KDS reductase, Tsc10p. Heterologous expression in yeast of either Arabidopsis gene restored 3-KDS reductase activity to the yeast tsc10Δ mutant, confirming both as bona fide 3-KDS reductase genes. Consistent with sphingolipids having essential functions in plants, double mutant progeny lacking both genes were not recovered from crosses of single tsc10A and tsc10B mutants. Although the 3-KDS reductase genes are functionally redundant and ubiquitously expressed in Arabidopsis, 3-KDS reductase activity was reduced to 10% of wild-type levels in the loss-of-function tsc10a mutant, leading to an altered sphingolipid profile. This perturbation of sphingolipid biosynthesis in the Arabidopsis tsc10a mutant leads an altered leaf ionome, including increases in Na, K, and Rb and decreases in Mg, Ca, Fe, and Mo. Reciprocal grafting revealed that these changes in the leaf ionome are driven by the root and are associated with increases in root suberin and alterations in Fe homeostasis.


Subject(s)
Alcohol Oxidoreductases/metabolism , Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Plant Leaves/chemistry , Plant Roots/metabolism , Sphingolipids/biosynthesis , Alcohol Oxidoreductases/genetics , Alleles , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Cell Survival , Chromosome Mapping , Gene Expression Regulation, Plant , Homeostasis , Iron/metabolism , Lipids/biosynthesis , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mutation , Oxidoreductases/metabolism , Polymorphism, Genetic , Potassium/metabolism , Sequence Homology, Amino Acid , Sodium/metabolism , Yeasts/genetics , Yeasts/metabolism
7.
J Biol Chem ; 285(6): 3986-3996, 2010 Feb 05.
Article in English | MEDLINE | ID: mdl-19940120

ABSTRACT

The stigmatic estolide is a lipid-based polyester constituting the major component of exudate in solanaceous plants. Although the exudate is believed to play important roles in the pollination process, the biosynthetic pathway of stigmatic estolide, including genes encoding the key enzymes, remains unknown. Here we report the cloning and characterization of the cytochrome P450 gene CYP86A22, which encodes a fatty acyl-CoA omega-hydroxylase involved in estolide biosynthesis in the stigma of Petunia hybrida. A CYP86A22 cDNA was isolated from a developing stigma cDNA library, and the corresponding gene was shown to express predominantly in the developing stigma. Among six P450 genes isolated from this library, only CYP86A22 was implicated in omega-hydroxylation following RNA interference (RNAi)-mediated suppression. Unlike wild-type plants in which omega-hydroxy fatty acids (mainly in the form of 18-hydroxy oleic acid and 18-hydroxy linoleic acid) compose 96% of total stigma fatty acids, the omega-hydroxy fatty acids were essentially absent in the stigmas from 18 of 46 CYP86A22-RNAi transgenic plants and had varying levels of suppression in the remaining 28 plants. Furthermore, lipids in the 18 CYP86A22-RNAi stigmas were predominantly triacylglycerols and diacylglycerols instead of the estolides, which characterize the wild-type stigma. Analyses of recombinant CYP86A22 conclusively demonstrated that this P450 is a omega-hydroxylase with a substrate preference for both saturated and unsaturated acyl-CoAs rather than free fatty acids. We conclude that the cytochrome P450 enzyme CYP86A22 is the key fatty acyl-CoA omega-hydroxylase essential for the production of omega-hydroxy fatty acids and the biosynthesis of triacylglycerol-/diacylglycerol-based estolide polyesters in the petunia stigma.


Subject(s)
Cytochrome P-450 Enzyme System/genetics , Flowers/genetics , Petunia/genetics , Plant Proteins/genetics , Polyesters/metabolism , Acyl Coenzyme A/metabolism , Amino Acid Sequence , Blotting, Northern , Cloning, Molecular , Cytochrome P-450 CYP4A/genetics , Cytochrome P-450 CYP4A/metabolism , Cytochrome P-450 Enzyme System/metabolism , DNA, Complementary/chemistry , DNA, Complementary/genetics , Fatty Acids/metabolism , Flowers/growth & development , Flowers/metabolism , Gene Expression Profiling , Gene Expression Regulation, Developmental , Gene Expression Regulation, Plant , Gene Library , Lipids/chemistry , Molecular Sequence Data , Petunia/growth & development , Petunia/metabolism , Plant Proteins/metabolism , Plants, Genetically Modified , Polyesters/chemistry , RNA, Small Interfering/genetics , Sequence Analysis, DNA , Substrate Specificity
8.
Plant Cell ; 20(7): 1862-78, 2008 07.
Article in English | MEDLINE | ID: mdl-18612100

ABSTRACT

Sphingolipids are structural components of endomembranes and function through their metabolites as bioactive regulators of cellular processes such as programmed cell death. A characteristic feature of plant sphingolipids is their high content of trihydroxy long-chain bases (LCBs) that are produced by the LCB C-4 hydroxylase. To determine the functional significance of trihydroxy LCBs in plants, T-DNA double mutants and RNA interference suppression lines were generated for the two Arabidopsis thaliana LCB C-4 hydroxylase genes Sphingoid Base Hydroxylase1 (SBH1) and SBH2. These plants displayed reductions in growth that were dependent on the content of trihydroxy LCBs in sphingolipids. Double sbh1 sbh2 mutants, which completely lacked trihydroxy LCBs, were severely dwarfed, did not progress from vegetative to reproductive growth, and had enhanced expression of programmed cell death associated-genes. Furthermore, the total content of sphingolipids on a dry weight basis increased as the relative amounts of trihydroxy LCBs decreased. In trihydroxy LCB-null mutants, sphingolipid content was approximately 2.5-fold higher than that in wild-type plants. Increases in sphingolipid content resulted from the accumulation of molecular species with C16 fatty acids rather than with very-long-chain fatty acids, which are more commonly enriched in plant sphingolipids, and were accompanied by decreases in amounts of C16-containing species of chloroplast lipids. Overall, these results indicate that trihydroxy LCB synthesis plays a central role in maintaining growth and mediating the total content and fatty acid composition of sphingolipids in plants.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Plant Leaves/metabolism , Sphingolipids/metabolism , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis Proteins/genetics , Chromatography, High Pressure Liquid , DNA, Bacterial/genetics , Genetic Complementation Test , Hydroxylation , Models, Biological , Molecular Structure , Plant Leaves/genetics , Plant Leaves/growth & development , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Plants, Genetically Modified/metabolism , RNA Interference , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Electrospray Ionization , Sphingolipids/chemistry , Tandem Mass Spectrometry
9.
J Biol Chem ; 282(38): 28195-206, 2007 09 21.
Article in English | MEDLINE | ID: mdl-17635905

ABSTRACT

The sphingoid long chain bases (LCBs) and their phosphorylated derivatives (LCB-Ps) are important signaling molecules in eukaryotic organisms. The cellular levels of LCB-Ps are tightly controlled by the coordinated action of the LCB kinase activity responsible for their synthesis and the LCB-P phosphatase and lyase activities responsible for their catabolism. Although recent studies have implicated LCB-Ps as regulatory molecules in plants, in comparison with yeast and mammals, much less is known about their metabolism and function in plants. To investigate the functions of LCB-Ps in plants, we have undertaken the identification and characterization of Arabidopsis genes that encode the enzymes of LCB-P metabolism. In this study the Arabidopsis At1g27980 gene was shown to encode the only detectable LCB-P lyase activity in Arabidopsis. The LCB-P lyase activity was characterized, and mutant plant lines lacking the lyase were generated and analyzed. Whereas in other organisms loss of LCB-P lyase activity is associated with accumulation of high levels of LCB/LCB-Ps and developmental abnormalities, the sphingolipid profiles of the mutant plants were remarkably similar to those of wild-type plants, and no developmental abnormalities were observed. Thus, these studies indicate that the lyase plays a minor role in maintenance of sphingolipid metabolism during normal plant development and growth. However, a clear role for the lyase was revealed upon perturbation of sphingolipid synthesis by treatment with the inhibitor of ceramide synthase, fumonisin B(1).


Subject(s)
Aldehyde-Lyases/genetics , Arabidopsis Proteins/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Fumonisins/metabolism , Gene Expression Regulation, Fungal , Gene Expression Regulation, Plant , Mutation , Phosphates , Aldehyde-Lyases/physiology , Amino Acid Sequence , Arabidopsis Proteins/metabolism , Arabidopsis Proteins/physiology , Fumonisins/chemistry , Fungal Proteins/metabolism , Microsomes/metabolism , Models, Chemical , Molecular Sequence Data , Saccharomyces cerevisiae/metabolism , Sequence Homology, Amino Acid , Sphingolipids/chemistry
10.
Rapid Commun Mass Spectrom ; 21(7): 1304-14, 2007.
Article in English | MEDLINE | ID: mdl-17340572

ABSTRACT

Changes in sphingolipids have been associated with profound effects in cell fate and development in both plants and animals. Sphingolipids as a group consist of a large number of different compound classes of which numerous individual species may vary in response to environmental stimuli to affect cellular responses. The ability to measure all sphingolipids simultaneously is, therefore, essential to an understanding of the biochemical regulation of sphingolipid metabolism and signaling molecules derived from it. In the model plant Arabidopsis thaliana, the major sphingolipid classes are glycosylinositolphosphoceramides, glucosylceramides, hydroxyceramides and ceramides. Other minor but potentially important sphingolipids are free long-chain bases and their phosphorylated derivates. By using a single solvent system with reversed-phase high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry detection we have been able to separate and measure 168 sphingolipids from a crude sample. This greatly speeds up and simplifies the analysis of plant sphingolipids and should pave the way for a better understanding of their role in plant performance.


Subject(s)
Arabidopsis/chemistry , Chromatography, High Pressure Liquid/methods , Plant Extracts/chemistry , Spectrometry, Mass, Electrospray Ionization/methods , Sphingolipids/chemistry , Sphingolipids/analysis
11.
Planta ; 226(2): 381-94, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17323080

ABSTRACT

The surface of plants is covered by cuticular wax, which contains a mixture of very long-chain fatty acid (VLCFA) derivatives. This wax surface provides a hydrophobic barrier which reduces non-stomatal water loss. One component of the cuticular wax is the alkyl esters, which typically contain a VLCFA esterified to an alcohol of a similar length. As part of an EST project, we recently identified an acyltransferase with 19% sequence identity (amino acid) to a bacterial 'bifunctional' wax-ester synthase/diacylglycerol acyltransferase (WS/DGAT). Northern analysis revealed that this petunia homologue was expressed predominantly within the petals. The cDNA encoding the WS/DGAT homologue was introduced into a yeast strain deficient in triacylglycerol biosynthesis. The expressed protein failed to restore triacylglycerol biosynthesis, indicating that it lacked DGAT activity. However, isoamyl esters of fatty acids were detected, which suggested that the petunia cDNA encoded a wax-synthase. Waxes were extracted from petunia petals and leaves. The petal wax extract was rich in VLCFA esters of methyl, isoamyl, and short-to-medium straight chain alcohols (C4-C12). These low molecular weight wax-esters were not present in leaf wax. In-vitro enzymes assays were performed using the heterologously expressed protein and 14C-labelled substrates. The expressed protein was membrane bound, and displayed a preference for medium chain alcohols and saturated very long-chain acyl-CoAs. In fact, the activity would be sufficient to produce most of the low molecular wax-esters present in petals, with methyl-esters being the exception. This work is the first characterization of a eukaryotic protein from the WS/DGAT family.


Subject(s)
Acyltransferases/physiology , Membrane Proteins/physiology , Petunia/metabolism , Plant Proteins/physiology , Waxes/metabolism , Acyltransferases/chemistry , Acyltransferases/genetics , Amino Acid Sequence , Cloning, Molecular , Esters/metabolism , Flowers/enzymology , Flowers/metabolism , Membrane Proteins/chemistry , Membrane Proteins/genetics , Molecular Sequence Data , Petunia/enzymology , Plant Proteins/chemistry , Plant Proteins/genetics , Saccharomyces cerevisiae/genetics , Sequence Alignment , Substrate Specificity
12.
Biochem Mol Biol Educ ; 35(6): 410-5, 2007 Nov.
Article in English | MEDLINE | ID: mdl-21591136

ABSTRACT

Studies of protein function increasingly use multifaceted approaches that span disciplines including recombinant DNA technology, cell biology, and analytical biochemistry. These studies rely on sophisticated equipment and methodologies including confocal fluorescence microscopy, mass spectrometry, and X-ray crystallography that are beyond the scope of traditional laboratory courses. To equip the advanced undergraduate and beginning graduate students with an enabling base of knowledge and initial experience with advanced protein research methodologies, a laboratory course entitled Plant Cells and Proteins was developed in a partnership between Washington University and the Donald Danforth Plant Science Center in St. Louis. In this one semester course, 10-12 students obtain hands-on experience with plant tissue culture, gene transformation, subcellular localization of fluorescent recombinant proteins using confocal microscopy, purification of affinity-tagged recombinant proteins, isolation of total protein extracts, enzymatic assays, one- and two-dimensional gel electrophoresis, MALDI-TOF and ESI-Q-TOF mass spectrometry, protein crystallization, and X-ray diffraction. The course is taught as a series of modules, each led by an expert researcher. Students are evaluated based on a series of graded written reports and tests of their mastery of key concepts, interpretations, and the limitations of the experimental methods.

13.
J Am Chem Soc ; 128(40): 13030-1, 2006 Oct 11.
Article in English | MEDLINE | ID: mdl-17017764

ABSTRACT

Resveratrol is a naturally occurring defense compound produced by a limited number of plants in response to stresses. Besides cardiovascular benefits, this health-promoting compound has been reported to extend life spans in yeasts, flies, worms, and fish. To biosynthesize resveratrol de novo, tyrosine ammonia lyase (TAL), 4-coumarate CoA-ligase (4CL), and stilbene synthase (STS) were isolated from Rhodobacter sphaeroides, Arabidopsis thaliana, and Vitis vinifera, respectively. Yeast cells expressing 4CL and STS produce resveratrol when fed with 4-coumaric acid, the substrate of 4CL. When a translational fusion protein joining 4CL and STS was used, yeast cells produced 15-fold more resveratrol than the cotransformed cells, suggesting that physical localization of 4CL and STS facilitate resveratrol production. When the resveratrol pathway was introduced into human HEK293 cells, de novo biosynthesis was detected, leading to intracellular accumulation of resveratrol. We successfully engineered an entire plant natural product pathway into a mammalian host.


Subject(s)
Acyltransferases/genetics , Ammonia-Lyases/genetics , Arabidopsis Proteins/genetics , Coenzyme A Ligases/genetics , Recombinant Fusion Proteins/metabolism , Stilbenes/metabolism , Acyltransferases/metabolism , Ammonia-Lyases/metabolism , Arabidopsis Proteins/metabolism , Cell Line , Cloning, Molecular , Coenzyme A Ligases/metabolism , Humans , Kidney/cytology , Protein Engineering/methods , Recombinant Fusion Proteins/genetics , Resveratrol , Rhodobacter sphaeroides/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism
14.
Biochem Biophys Res Commun ; 346(2): 583-90, 2006 Jul 28.
Article in English | MEDLINE | ID: mdl-16765910

ABSTRACT

The very long chain fatty acids (VLCFA) incorporated into plant lipids are derived from the iterative addition of C2 units provided by malonyl-CoA to an acyl-CoA by the 3-ketoacyl-CoA synthase (KCS) component of a fatty acid elongase (FAE) complex. Mining of the Arabidopsis genome sequence database revealed 20 genes with homology to seed-specific FAE1 KCS. Eight of the 20 putative KCSs were cloned, expressed in yeast, and isolated as (His)6 fusion proteins. Five of the eight (At1g71160, At1g19440, At1g07720, At5g04530, and At4g34250) had little or no activity with C16 to C20 substrates while three demonstrated activity with C16, C18, and C20 saturated acyl-CoA substrates. At1g01120 KCS (KCS1) and At2g26640 KCS had broad substrate specificities when assayed with saturated and mono-unsaturated C16 to C24 acyl-CoAs while At4g34510 KCS was specific for saturated fatty acyl-CoA substrates.


Subject(s)
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase/metabolism , Acetyltransferases/metabolism , Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase/genetics , Acetyltransferases/genetics , Amino Acid Sequence , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Cloning, Molecular , Fatty Acid Elongases , Fatty Acids/metabolism , Fatty Acids, Unsaturated/metabolism , Histidine/genetics , Molecular Sequence Data , Phylogeny , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Substrate Specificity , Yeasts/genetics , Yeasts/metabolism
15.
J Biol Chem ; 281(32): 22684-94, 2006 08 11.
Article in English | MEDLINE | ID: mdl-16772288

ABSTRACT

Sphingolipids are major components of the plasma membrane, tonoplast, and other endomembranes of plant cells. Previous compositional analyses have focused only on individual sphingolipid classes because of the widely differing polarities of plant sphingolipids. Consequently, the total content of sphingolipid classes in plants has yet to be quantified. In addition, the major polar sphingolipid class in the model plant Arabidopsis thaliana has not been previously determined. In this report, we describe the separation and quantification of sphingolipid classes from A. thaliana leaves using hydrolysis of sphingolipids and high performance liquid chromatography (HPLC) analysis of o-phthaldialdehyde derivatives of the released long-chain bases to monitor the separation steps. An extraction solvent that contained substantial proportions of water was used to solubilized >95% of the sphingolipids from leaves. Neutral and charged sphingolipids were then partitioned by anion exchange solid phase extraction. HPLC analysis of the charged lipid fraction from A. thaliana revealed only one major anionic sphingolipid class, which was identified by mass spectrometry as hexose-hexuronic-inositolphosphoceramide. The neutral sphingolipids were predominantly composed of monohexosylceramide with lesser amounts of ceramides. Extraction and separation of sphingolipids from soybean and tomato showed that, like A. thaliana, the neutral sphingolipids consisted of ceramide and monohexosylceramides; however, the major polar sphingolipid was found to be N-acetyl-hexosamine-hexuronic-inositolphosphoceramide. In extracts from A. thaliana leaves, hexosehexuronic-inositolphosphoceramides, monohexosylceramides, and ceramides accounted for approximately 64, 34, and 2% of the total sphingolipids, respectively, suggesting an important role for the anionic sphingolipids in plant membranes.


Subject(s)
Plant Leaves/metabolism , Sphingolipids/chemistry , Sphingolipids/isolation & purification , Anions , Arabidopsis/metabolism , Ceramides/chemistry , Chromatography, High Pressure Liquid/methods , Glycosphingolipids/chemistry , Hydrolysis , Solanum lycopersicum/metabolism , Mass Spectrometry , Models, Chemical , Plant Physiological Phenomena , Sphingolipids/classification , o-Phthalaldehyde/chemistry
16.
Eur J Biochem ; 269(19): 4789-98, 2002 Oct.
Article in English | MEDLINE | ID: mdl-12354110

ABSTRACT

We are interested in constructing a model for the substrate-binding site of fatty acid elongase-1 3-ketoacyl CoA synthase (FAE1 KCS), the enzyme responsible for production of very long chain fatty acids of plant seed oils. Arabidopsis thaliana and Brassica napus FAE1 KCS enzymes are highly homologous but the seed oil content of these plants suggests that their substrate specificities differ with respect to acyl chain length. We used in vivo and in vitro assays of Saccharomyces cerevisiae-expressed FAE1 KCSs to demonstrate that the B. napus FAE1 KCS enzyme favors longer chain acyl substrates than the A. thaliana enzyme. Domains/residues responsible for substrate specificity were investigated by determining catalytic activity and substrate specificity of chimeric enzymes of A. thaliana and B. napus FAE1 KCS. The N-terminal region, excluding the transmembrane domain, was shown to be involved in substrate specificity. One chimeric enzyme that included A. thaliana sequence from the N terminus to residue 114 and B. napus sequence from residue 115 to the C terminus had substrate specificity similar to that of A. thaliana FAE1 KCS. However, a K92R substitution in this chimeric enzyme changed the specificity to that of the B. napus enzyme without loss of catalytic activity. Thus, this study was successful in identifying a domain involved in determining substrate specificity in FAE1 KCS and in engineering an enzyme with novel activity.


Subject(s)
Acetyltransferases/metabolism , Acetyltransferases/chemistry , Acetyltransferases/genetics , Amino Acid Sequence , Arabidopsis/enzymology , Arabidopsis/genetics , Base Sequence , Brassica napus/enzymology , Brassica napus/genetics , DNA, Plant/genetics , Fatty Acid Elongases , Kinetics , Membranes/enzymology , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Structure, Tertiary , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/genetics , Sequence Homology, Amino Acid , Species Specificity , Substrate Specificity
17.
Eur J Biochem ; 269(14): 3531-9, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12135493

ABSTRACT

The Arabidopsis FAE1 beta-ketoacyl-CoA synthase (FAE1 KCS) catalyzes the condensation of malonyl-CoA with long-chain acyl-CoAs. Sequence analysis of FAE1 KCS predicted that this condensing enzyme is anchored to a membrane by two adjacent N-terminal membrane-spanning domains. In order to characterize the FAE1 KCS and analyze its mechanism, FAE1 KCS and its mutants were engineered with a His6-tag at their N-terminus, and expressed in Saccharomyces cerevisiae. The membrane-bound enzyme was then solubilized and purified to near homogeneity on a metal affinity column. Wild-type recombinant FAE1 KCS was active with several acyl-CoA substrates, with highest activity towards saturated and monounsaturated C16 and C18. In the absence of an acyl-CoA substrate, FAE1 KCS was unable to carry out decarboxylation of [3-(14)C]malonyl-CoA, indicating that it requires binding of the acyl-CoA for decarboxylation activity. Site-directed mutagenesis was carried out on the FAE1 KCS to assess if this condensing enzyme was mechanistically related to the well characterized soluble condensing enzymes of fatty acid and flavonoid syntheses. A C223A mutant enzyme lacking the acylation site was unable to carry out decarboxylation of malonyl-CoA even when 18:1-CoA was present. Mutational analyses of the conserved Asn424 and His391 residues indicated the importance of these residues for FAE1-KCS activity. The results presented here provide the initial analysis of the reaction mechanism for a membrane-bound condensing enzyme from any source and provide evidence for a mechanism similar to the soluble condensing enzymes.


Subject(s)
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase/chemistry , Acetyltransferases/chemistry , Arabidopsis Proteins/chemistry , Arabidopsis/enzymology , Isoenzymes/chemistry , Membrane Proteins/chemistry , 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase/genetics , 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase/metabolism , Acetyltransferases/genetics , Acetyltransferases/metabolism , Amino Acid Substitution , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Fatty Acid Elongases , Isoenzymes/genetics , Isoenzymes/metabolism , Malonyl Coenzyme A/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mutagenesis, Site-Directed , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , Substrate Specificity
18.
Article in English | MEDLINE | ID: mdl-15012259

ABSTRACT

All plant cells produce fatty acids from acetyl-CoA by a common pathway localized in plastids. Although the biochemistry of this pathway is now well understood, much less is known about how plants control the very different amounts and types of lipids produced in different tissues. Thus, a central challenge for plant lipid research is to provide a molecular understanding of how plants regulate the major differences in lipid metabolism found, for example, in mesophyll, epidermal, or developing seed cells. Acetyl-CoA carboxylase (ACCase) is one control point that regulates rates of fatty acid synthesis. However, the biochemical modulators that act on ACCase and the factors that in turn control these modulators are poorly understood. In addition, little is known about how the expression of genes involved in fatty acid synthesis is controlled. This review evaluates current knowledge of regulation of plant fatty metabolism and attempts to identify the major unanswered questions.

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