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1.
Cell Death Dis ; 5: e1322, 2014 Jul 10.
Article in English | MEDLINE | ID: mdl-25010988

ABSTRACT

Oxygen deprivation (hypoxia) is a common feature of solid tumors in advanced stages. The primary cellular transcriptional responses to hypoxia are mainly mediated by the transcription factor hypoxia-inducible factor (HIF). HIF consists of an oxygen-labile α-subunit (HIF-1α, -2α) and a stable ß-subunit (ARNT). Prolyl-4-hydroxylase 2 (PHD2) is known as an important mediator of the oxygen-dependent degradation of HIF-α subunits. As HIF-α subunits are not confirmed to be the only substrates of PHD2, it is unknown whether PHD2 regulates HIF-1α and HIF-2α by interacting with other intracellular molecules. In this study, we found that in the glioblastoma cells, PHD2 maintains the gene expression of HIF-1α in dependence of nuclear factor κB and suppresses the gene expression of HIF-2α through HIF-1α. The PHD2-mediated degradation of HIF-1α and HIF-2α seems less important. Furthermore, PHD2 enhances hypoxia-induced glioblastoma cell death by modulating the expression of the HIF target genes glucose transporter 1, vascular endothelial growth factor-A and Bcl-2 binding protein 3. Our findings show that PHD2 inhibits the adaptation of glioblastoma cells to hypoxia by regulating the HIF-α subunits in a non-canonical way. Modulation of PHD2 activity might be considered as a new way to inhibit glioblastoma progression.


Subject(s)
Glioblastoma/enzymology , Glioblastoma/physiopathology , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Hypoxia/enzymology , Hypoxia/physiopathology , Prolyl Hydroxylases/metabolism , Cell Death , Cell Line, Tumor , Gene Expression Regulation, Neoplastic , Glioblastoma/genetics , Humans , Hypoxia/genetics , Hypoxia-Inducible Factor 1, alpha Subunit/genetics , Oxygen/metabolism , Prolyl Hydroxylases/genetics , Up-Regulation
2.
Cell Death Dis ; 5: e1020, 2014 Jan 23.
Article in English | MEDLINE | ID: mdl-24457964

ABSTRACT

Glioblastoma is the most common brain tumor in adults. Advanced glioblastomas normally contain hypoxic areas. The primary cellular responses to hypoxia are generally mediated by the transcription factor hypoxia-inducible factor 1 (HIF-1). Interleukin-1ß (IL-1ß) is a cytokine that is often present in the glioblastoma microenvironment and is known to be a modulator of glioblastoma progression. However, the role of IL-1ß in regulating glioblastoma progression is still controversial. In this study, we found that in the human glioblastoma cell lines U87MG and U138MG, IL-1ß inhibits the transactivation activity of HIF-1 by promoting the ubiquitin-independent proteasomal degradation of the oxygen-labile α-subunit of HIF-1 and downregulates the expression of the HIF-1 target gene adrenomedullin (AM). Apoptosis and MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) assays showed that AM protects glioblastoma cells against hypoxia-induced apoptosis in a dose-dependent manner. Thus, in the presence of IL-1ß more glioblastoma cells undergo hypoxia-induced cell death. Our findings suggest that when estimating the influence of IL-1ß on the prognosis of glioblastoma patients, factors such as the degree of hypoxia, the expression levels of HIF-1 and AM should be taken into consideration. For the AM-producing glioblastoma cells, IL-1ß represents a potent apoptosis inducer.


Subject(s)
Adrenomedullin/biosynthesis , Apoptosis , Brain Neoplasms/metabolism , Glioblastoma/metabolism , Hypoxia-Inducible Factor 1/metabolism , Hypoxia/metabolism , Interleukin-1beta/metabolism , Brain Neoplasms/genetics , Brain Neoplasms/physiopathology , Cell Line, Tumor , Glioblastoma/genetics , Glioblastoma/physiopathology , Humans , Hypoxia/genetics , Hypoxia/physiopathology , Hypoxia-Inducible Factor 1/genetics , Interleukin-1beta/genetics , Oxygen/metabolism
3.
Arch Virol ; 158(9): 1877-87, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23553453

ABSTRACT

A virus identified as "apple green crinkle associated virus" (AGCaV) was isolated from Aurora Golden Gala apple showing severe symptoms of green crinkle disease. Evidence was obtained of a potential causal relationship to the disease. The viral genome consists of 9266 nucleotides, excluding the poly(A) tail at the 3'-terminus. It has a genome organization similar to that of members of the species Apple stem pitting virus (ASPV), the type species of the genus Foveavirus, family Betaflexiviridae. ORF1 of AGCaV encodes a replicase-complex polyprotein with a molecular mass of 247 kDa; the proteins of ORFs 2, 3, and 4 (TGB proteins) are estimated to be 25.1 kDa, 12.8 kDa, and 7.4 kDa, respectively; and ORF5 encodes the CP, with an estimated molecular mass of 43.3 kDa. Interestingly, AGCaV utilizes different stop codons for ORF1, ORF3, and ORF5 compared to the ASPV type isolate PA66, and between the two viruses, six distinct indel events were observed within ORF5. AGCaV has four non-coding regions (NCRs), including a 5'-NCR (60 nt), a 3'-NCR (134 nt), and two intergenic (IG) NCRs: IG-NCR1 (69 nt) and IG-NCR2 (91 nt). A conserved stable hairpin structure was identified in the variable 5'-NCR of members of the genus Foveavirus. AGCaV may be a variant or strain of ASPV with unique biological properties, but there is evidence that it may be a distinct putative foveavirus.


Subject(s)
Flexiviridae/classification , Flexiviridae/genetics , Genome, Viral , Malus/virology , Plant Diseases/virology , Cloning, Molecular , DNA Primers , Flexiviridae/isolation & purification , Molecular Sequence Data , Open Reading Frames/genetics , Phylogeny , RNA, Viral/analysis , RNA, Viral/isolation & purification , Reverse Transcriptase Polymerase Chain Reaction/methods , Sequence Analysis, DNA
4.
Nutr Metab Cardiovasc Dis ; 23 Suppl 1: S37-43, 2013 Dec.
Article in English | MEDLINE | ID: mdl-22682530

ABSTRACT

BACKGROUND AND AIMS: Erythropoietin (EPO) stimulates erythropoiesis through its specific receptor (EPO-R). Preclinical work has assigned a role for the EPO/EPO-R system in the heart and blood vessels. The potential use of erythropoiesis-stimulating agents (ESAs) for nonhematopoietic indications is a focus of current research. This article considers proven actions of EPO in the cardiovascular system, with emphasis on the human responses. DATA SYNTHESIS: By use of specific anti-EPO-R antibody no EPO-R protein was detected by Western blotting in normal non-erythroid tissues. Clinical trials failed to demonstrate clear beneficial effects of high-dosed ESAs in patients with coronary syndrome or myocardial infarct. While ESA therapy may lead to an elevation in arterial blood pressure in previously anemic patients, several studies have reported no effects on vessels/blood pressure with ESAs. EPO has been reported to stimulate angiogenesis. EPO-R mRNA is detectable in human vascular endothelium. However, in most vitro studies very high concentrations of EPO were applied and well-designed studies have failed to show direct effects of ESAs on endothelial cells. Whether EPO promotes the mobilization of myeloid progenitor cells into the blood stream still needs to be studied in more detail, as this effect may prove useful for augmenting the neovascularization of ischemic tissues. With respect to the administration of ESAs to tumor patients, a deeper insight into the role of EPO for tumor angiogenesis is desirable. CONCLUSIONS: The enthusiastic reports of the nonhematopoietic cytoprotective potential of EPO and its derivatives in the cardiovascular system have not yet been confirmed in placebo-controlled clinical trials.


Subject(s)
Endothelium, Vascular/physiology , Erythropoietin/physiology , Neovascularization, Pathologic/physiopathology , Neovascularization, Physiologic/physiology , Animals , Erythropoietin/therapeutic use , Heart Failure/physiopathology , Humans , Myocardial Infarction/physiopathology , Receptors, Erythropoietin/physiology
5.
Br J Cancer ; 106(7): 1249-58, 2012 Mar 27.
Article in English | MEDLINE | ID: mdl-22395661

ABSTRACT

Erythropoiesis-stimulating agents (ESAs) increase red blood cell (RBC) production in bone marrow by activating the erythropoietin receptor (EpoR) on erythrocytic-progenitor cells. Erythropoiesis-stimulating agents are approved in the United States and Europe for treating anaemia in cancer patients receiving chemotherapy based on randomised, placebo-controlled trials showing that ESAs reduce RBC transfusions. Erythropoiesis-stimulating agent-safety issues include thromboembolic events and concerns regarding whether ESAs increase disease progression and/or mortality in cancer patients. Several trials have reported an association between ESA use and increased disease progression and/or mortality, whereas other trials in the same tumour types have not provided similar findings. This review thoroughly examines available evidence regarding whether ESAs affect disease progression. Both clinical-trial data on ESAs and disease progression, and preclinical data on how ESAs could affect tumour growth are summarised. Preclinical topics include (i) whether tumour cells express EpoR and could be directly stimulated to grow by ESA exposure and (ii) whether endothelial cells express EpoR and could be stimulated by ESA exposure to undergo angiogenesis and indirectly promote tumour growth. Although assessment and definition of disease progression vary across studies, the current clinical data suggest that ESAs may have little effect on disease progression in chemotherapy patients, and preclinical data indicate a direct or indirect effect of ESAs on tumour growth is not strongly supported.


Subject(s)
Hematinics/adverse effects , Neoplasms/drug therapy , Anemia/complications , Anemia/drug therapy , Clinical Trials as Topic , Disease Progression , Drug Evaluation, Preclinical , Hematinics/metabolism , Hematinics/therapeutic use , Humans , Meta-Analysis as Topic , Neoplasms/blood supply , Neoplasms/complications , Neoplasms/metabolism , Receptors, Erythropoietin/metabolism
6.
J Bacteriol ; 193(3): 795-6, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21097611

ABSTRACT

Fire blight, a plant disease of economic importance caused by Erwinia amylovora, may be controlled by the application of bacteriophages. Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora. The American phages resemble two already-described viral genomes, whereas the E. tasmaniensis phage displays a singular genomic sequence in BLAST searches.


Subject(s)
Bacteriophages/genetics , DNA, Viral/chemistry , DNA, Viral/genetics , Erwinia/virology , Genome, Viral , Bacteriophages/isolation & purification , Erwinia/drug effects , Mitomycin/metabolism , Molecular Sequence Data , North America , Sequence Analysis, DNA , Virus Activation
8.
Curr Med Chem ; 16(10): 1236-47, 2009.
Article in English | MEDLINE | ID: mdl-19355882

ABSTRACT

Recombinant human erythropoietin (rHuEPO) engineered in Chinese hamster ovary (CHO) cell cultures (Epoetin alfa and Epoetin beta) and its hyperglycosylated analogue Darbepoetin alfa are known to be misused by athletes. The drugs can be detected by isoelectric focusing (IEF) and immunoblotting of urine samples, because "EPO" is in reality a mixture of isoforms and the N-glycans of the recombinant products differ from those of the endogenous hormone. However, there is a plethora of novel erythropoiesis stimulating agents (ESAs). Since the originator Epoetins alfa and beta are no longer protected by patent in the European Union, rHuEPO biosimilars have entered the market. In addition, several companies in Asia, Africa and Latin America produce copied rHuEPOs for clinical purposes. While the amino acid sequence of all Epoetins is identical, the structure of their glycans differs depending on the mode of production. Some products contain more acidic and others more basic EPO isoforms. Epoetin delta is special, as it was engineered by homologous recombination in human fibrosarcoma cells (HT-1080), thus lacking N-glycolylneuraminic acid like native human EPO. ESAs under development include EPO fusion proteins, synthetic erythropoiesis stimulating protein (SEP) and peptidic (Hematide(), CNTO 528) as well as non-peptidic EPO mimetics. Furthermore, preclinical respectively clinical trials have been performed with small orally active drugs that stimulate endogenous EPO production by activating the EPO promoter ("GATA-inhibitors": diazepane derivatives) or enhancer ("HIF-stabilizers": 2-oxoglutarate analogues). The prohibited direct EPO gene transfer may become a problem in sports only in the future.


Subject(s)
Doping in Sports , Erythropoietin/chemistry , Hematinics/chemistry , Protein Engineering , Animals , Cricetinae , Darbepoetin alfa , Erythropoietin/analogs & derivatives , Erythropoietin/blood , Erythropoietin/genetics , Hematinics/blood , Humans , Immunoblotting , Protein Engineering/trends , Recombinant Proteins
9.
Biochem Biophys Res Commun ; 372(2): 336-40, 2008 Jul 25.
Article in English | MEDLINE | ID: mdl-18501194

ABSTRACT

Hypoxia-inducible factor-1 (HIF-1) is a heterodimeric transcription-factor composed of alpha- and beta-subunits. HIF-1 is not only necessary for the cellular adaptation to hypoxia, but it is also involved in inflammatory processes and wound healing. Glucocorticoids (GC) are therapeutically used to suppress inflammatory responses. Herein, we investigated whether GC modulate HIF-1 function using GC receptor (GR) possessing (HepG2) and GR deficient (Hep3B) human hepatoma cell cultures as model systems. Dexamethasone (DEX) treatment increased HIF-1alpha levels in the cytosol of HepG2 cells, while nuclear HIF-1alpha levels and HIF-1 DNA-binding was reduced. In addition, DEX dose-dependently lowered the hypoxia-induced luciferase activity in a reporter gene system. DEX suppressed the hypoxic stimulation of the expression of the HIF-1 target gene VEGF (vascular endothelial growth factor) in HepG2 cultures. DEX did not reduce hypoxically induced luciferase activity in HRB5 cells, a Hep3B derivative lacking GR. Transient expression of the GR in HRB5 cells restored the susceptibility to DEX. Our study discloses the inhibitory action of GC on HIF-1 dependent gene expression, which may be important with respect to the impaired wound healing in DEX-treated patients.


Subject(s)
Dexamethasone/pharmacology , Glucocorticoids/pharmacology , Hypoxia-Inducible Factor 1/antagonists & inhibitors , Anaerobiosis , Cell Hypoxia , Cell Line, Tumor , Gene Expression/drug effects , Humans , Hypoxia-Inducible Factor 1/metabolism , Receptors, Glucocorticoid/agonists , Receptors, Glucocorticoid/metabolism
10.
Curr Med Chem ; 14(17): 1853-62, 2007.
Article in English | MEDLINE | ID: mdl-17627521

ABSTRACT

The hypoxia-inducible transcription factors (HIFs) are central components in the cellular responses to a lack of O(2), i.e. hypoxia. Homologs of the HIF system (HIF-1, -2 and -3) are detectable in all nucleated cells of multicellular organisms. Active HIFs are heterodimers (HIF-alpha/ beta). In hypoxia the O(2)-labile alpha-subunit is translocated to the nucleus where it binds HIF-beta. Over 100 HIF target genes have already been identified. The translational products of these genes increase O(2) delivery to hypoxic tissues, such as erythropoietin which stimulates the production of red blood cells, and they adapt cellular metabolism to hypoxia, such as glycolytic enzymes. HIFs are inactive in normoxia because of O(2)-dependent enzymatic hydroxylation and subsequent degradation of their alpha-subunit. Three HIF-alpha prolyl hydroxylases (PHD1, 2 and 3) initiate proteasomal degradation while an asparaginyl hydroxylase (factor inhibiting HIF-1, FIH-1) inhibits the function of the C-terminal transactivation domain of HIF-alpha. In addition to O(2) and 2-oxoglutarate, the HIF-alpha hydroxylases require Fe(2+) and ascorbate as co-factors. Products of glycolysis can act as endogenous inhibitors of HIF hydroxylases which may lead to sustained activation of HIFs in cancer cells. The cofactor requirements define the routes to inhibition of the enzymes when HIF activation is desirable. In particular, 2-oxoglutarate analogues have emerged as promising tools for stimulation of erythropoiesis and angiogenesis ("HIF-stabilizers"). However, as the HIF system promotes the transcription of many genes, and other 2-oxoglutarate dependent dioxygenases are likely to be inhibited by the same analogues, careful evaluation of the inhibitors seems mandatory prior to their clinical use.


Subject(s)
Hypoxia-Inducible Factor 1/biosynthesis , Transcription Factors/metabolism , Amino Acid Sequence , Animals , Citric Acid Cycle/drug effects , Citric Acid Cycle/physiology , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Humans , Hydroxylation , Hypoxia-Inducible Factor 1/antagonists & inhibitors , Hypoxia-Inducible Factor 1/metabolism , Iron Deficiencies , Ketoglutaric Acids/pharmacology , Molecular Sequence Data , Nitric Oxide/metabolism , Procollagen-Proline Dioxygenase/antagonists & inhibitors , Tissue Distribution
11.
Cell Mol Life Sci ; 64(7-8): 989-98, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17372675

ABSTRACT

The suppression of hypoxia-induced erythropoietin (EPO) expression by inflammatory cytokines like interleukin-1 (IL-1) contributes to the development of the anemia of chronic disease (ACD). However, the precise mechanism of this suppression is unclear. The 3'-EPO enhancer mediates the transcriptional response to hypoxia by binding several transcription factors, including hypoxia-inducible factor, hepatocyte nuclear factor-4alpha (HNF-4alpha) and chicken ovalbumin upstream promoter transcription factor. We investigated whether IL-1beta inhibits the activity of the 3'-EPO enhancer via HNF-4alpha. IL-1beta inhibited HNF-4alpha mRNA expression and caused proteasome-dependent degradation of HNF-4alpha protein, which resulted in a strongly reduced DNA-binding activity of HNF-4alpha. Reporter gene assays revealed that IL-1beta caused a complete suppression of the hypoxic inducibility of the 3' enhancer via inhibition of HNF-4alpha. We conclude that IL-1beta, at least partially, reduces hypoxia-induced EPO expression by down-regulation of HNF-4alpha.


Subject(s)
Anemia/metabolism , Cell Hypoxia , Enhancer Elements, Genetic , Erythropoietin/genetics , Gene Expression Regulation/drug effects , Hepatocyte Nuclear Factor 4/metabolism , Interleukin-1beta/pharmacology , Anemia/genetics , Binding Sites , Cell Line, Tumor , DNA/metabolism , Hepatocyte Nuclear Factor 4/genetics , Humans , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Leupeptins/pharmacology , Luminescent Proteins/genetics , Proteasome Endopeptidase Complex/metabolism , Proteasome Inhibitors , RNA, Messenger/metabolism , Recombinant Fusion Proteins/genetics
12.
Int J Obes (Lond) ; 30(9): 1356-61, 2006 Sep.
Article in English | MEDLINE | ID: mdl-16534523

ABSTRACT

OBJECTIVE: Vascular endothelial growth factor (VEGF) has been suggested to enhance glucose transport across the blood-brain barrier, thereby increasing brain glucose supply. Increased brain glucose concentration is known to suppress food intake and to decrease body mass via action on hypothalamic regulation centers. Based on the crucial role of VEGF on brain glucose supply, we hypothesized that higher VEGF concentrations are associated with lower food intake and body mass in humans. METHODS: Intending to investigate subjects with high variance of blood glucose, we examined patients with type 2 diabetes mellitus. Our hypothesis was tested in a population-based cohort of 190 subjects with type 2 diabetes. Plasma VEGF levels in conjunction with other parameters known to modulate food intake were measured and subsequently correlated with food intake patterns at a breakfast buffet as well as with body mass. RESULTS: We found that subjects with higher concentrations of plasma VEGF had 17% less carbohydrate intake (P=0.003) and 4.8% lower body mass (P=0.017) than those with lower VEGF concentrations. Intake of protein and fat did not correlate with VEGF concentrations. These associations of plasma VEGF were confirmed in multiple linear regression analyses controlling for several parameters interacting with food intake. CONCLUSION: We conclude that high plasma VEGF concentrations are associated with less carbohydrate intake and lower body mass in type 2 diabetes. The role VEGF plays in facilitating glucose access to the brain represents a new aspect of food intake regulation and energy homeostasis, with relevance for diseases with body mass disturbances.


Subject(s)
Diabetes Mellitus, Type 2/blood , Diet, Carbohydrate-Restricted , Vascular Endothelial Growth Factor A/blood , Analysis of Variance , Cross-Sectional Studies , Feeding Behavior , Female , Humans , Male , Middle Aged
13.
Curr Pharm Biotechnol ; 6(1): 65-79, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15727557

ABSTRACT

This article is a selective extension of a review on recombinant human erythropoietin (rHu-EPO) as an anti-anaemic drug, published in this journal in 2000. It summarises the recent advances in understanding the molecular mechanisms by which the hypoxia-inducible transcription factor 1 (HIF-1) regulates O(2)-dependent genes, including the EPO gene in brain. With respect to brain integrity, EPO exerts positive effects in two different ways. First, rHu-EPO raises the blood haemoglobin concentration and, hence, the O(2) capacity of the blood in anaemic patients. The restored O(2) supply ameliorates attention difficulties and psychomotor slowing, improves memory capacities and normalises neuroendocrine functions. Second, EPO can act as a neurotrophic and neuroprotective factor directly in brain. EPO and its receptor are expressed in the cerebral cortex, cerebellum, hippocampus, pituitary gland and spinal cord. In vitro EPO protects against glutamate-induced cell death in a dose-dependent way. In animal models it reduces volumes of brain ischaemia, protects the cortex from hypoxic damage and leads to survival of neurons and synapses. One can expect that in the near future rHu-EPO will be used therapeutically in cerebral ischaemia, brain trauma, inflammatory diseases, and neural degenerative disorders. A first clinical trial has shown the neuroprotective effectiveness of the drug in cerebral ischaemia.


Subject(s)
Brain/physiology , Erythropoietin/physiology , Erythropoietin/therapeutic use , Animals , Brain/drug effects , Brain/metabolism , Erythropoietin/administration & dosage , Erythropoietin/genetics , Humans , Nervous System Diseases/drug therapy , Nervous System Diseases/metabolism , Recombinant Proteins
14.
Arch Virol ; 150(1): 107-23, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15449137

ABSTRACT

The complete genomic sequence of variant USA6b of Little cherry virus-2 (LChV-2), has been determined and is 15045 nucleotides in length, coding for 11 open reading frames (ORFs). The sequence shares 77.2% identity with a previously published, ca. 6 kb partial replicase sequence of LChV-2 (variant USA6a). Both LChV-2/USA6a and LChV-2/USA6b were obtained from the same tree infected with little cherry disease, and would suggest a mixed infection. LChV-2/USA6b is more closely related to the partially determined genomic sequence of a Canadian isolate of LChV-2, strain LC5 (92.9% identity). LChV-2/USA6b has an unusual genomic organization compared to other members of the Closteroviridae. The LChV-2/USA6b genome is potentially ambi-sense, with a negative sense ORF0 at the 5' terminus, from which an 18.1 kDa protein of unknown function can be expressed in vitro. The N-terminal region of the LChV-2/USA6 ORF1a translation product does not code for a papain-like protease motif. ORF1 codes for a novel motif, of unknown function, also present in isolates of the Grapevine leafroll associated virus-3, (genus Ampelovirus) as well as viruses of the family Flexiviridae. ORF3 lacks an AUG start codon, but could potentially be expressed via read-through of the ORF2 stop codon. At the 3' end, there is a re-organization of encoded genes compared with other members of the Closteroviridae including separation of the coat protein and coat protein duplicate genes by 4 other genes as found for LChV-2/LC5.


Subject(s)
Closteroviridae/genetics , Genome, Viral , Prunus/virology , RNA, Viral/analysis , Amino Acid Sequence , Closteroviridae/classification , Closteroviridae/isolation & purification , Molecular Sequence Data , Open Reading Frames
15.
Arch Virol ; 149(10): 1897-909, 2004 Oct.
Article in English | MEDLINE | ID: mdl-15669103

ABSTRACT

The complete nucleotide sequence of Strawberry mild yellow edge virus isolate D74, and the sequences of a 878 nt region of the coat protein and flanking regions of twenty three isolates of SMYEV were obtained and analysed. The full sequence of the aphid transmissible strain D74 was deduced and found to have an 86% sequence identity to the non-transmissible Agrobacterium infectious MY18 strain. In contrast to isolate MY18 the 5' terminal nucleotides (GAAAAC) of D74 are typical of those from other potexviruses. However, both MY18 and D74 have a non-AUG initiation codon for ORF2 encoding the triple gene block protein 1 (TGB1), and an overlapping TGB3 and coat protein (CP), features unique in the Potexvirus genus. Other conserved features of the genome, including stem-loop structures in the untranslated regions, and motifs common to related viruses are described. The previously postulated ORF6 of MY18 is absent in twenty of the isolates sequenced, including D74. Phylogenetic analysis places all isolates in one of three distinct groups/strains named here I (type-D74), II (type-9Redland), and III (type-MY18), with the majority of isolates, including all European isolates tested, belonging to strain I (type-D74).


Subject(s)
Conserved Sequence , Fragaria/virology , Genetic Variation , Genome, Viral , Potexvirus/genetics , Sequence Analysis, DNA , Amino Acid Motifs/genetics , Amino Acid Sequence , Capsid Proteins/genetics , Codon, Initiator , DNA, Viral/analysis , DNA, Viral/isolation & purification , Molecular Sequence Data , Nucleic Acid Conformation , Open Reading Frames , Phylogeny , Plant Diseases/virology , Potexvirus/classification , Potexvirus/isolation & purification , Sequence Alignment , Sequence Homology , Untranslated Regions , Viral Proteins/genetics
16.
J Virol Methods ; 111(2): 85-93, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12880923

ABSTRACT

The principal aphid-borne viruses infecting Strawberry (Fragaria spp.) Strawberry crinkle virus (SCV), Strawberry mild yellow edge virus (SMYEV), Strawberry mottle virus (SMoV) and Strawberry vein banding virus (SVBV) can cause serious crop losses. In this paper, a multiplex reverse transcriptase polymerase chain reaction (RT-PCR) method is described for the simultaneous detection of all four viruses in combination with a plant mRNA specific internal control which can be used as an indicator of the effectiveness of the extraction and RT-PCR. In total, 18 strawberry isolates infected naturally were analysed by this method. Every combination of RNA virus was able to be detected and a full complement of all four viruses were found together in three isolates, all taken from wild strawberry (Fragaria chiloensis (L.) Duch.) in Chile. The upper detection limit for the four viruses was at an extract dilution of 1/200. The broad applicability of the RNA specific internal control primers-which produced a PCR fragment of the expected size in 25 of 27 plant species tested-combined with improvements, made in extraction methods described provides potentially a standard method for comparable RT-PCR analyses in a wide variety of plant species.


Subject(s)
Fragaria/virology , Plant Viruses/isolation & purification , RNA Viruses/isolation & purification , Reverse Transcriptase Polymerase Chain Reaction/methods , Animals , Aphids/virology , Atropa belladonna/enzymology , Atropa belladonna/genetics , NADH Dehydrogenase/genetics , Plant Diseases/virology , Plant Viruses/genetics , RNA Viruses/genetics , RNA, Messenger/genetics , RNA, Plant/genetics , RNA, Viral/analysis , RNA, Viral/isolation & purification , Reference Standards , Silicon Dioxide
17.
Plant Dis ; 87(4): 385-390, 2003 Apr.
Article in English | MEDLINE | ID: mdl-30831833

ABSTRACT

Strawberry mottle virus (SMoV) is probably the most important virus to infect strawberry (Fragaria spp.). All species of strawberry are susceptible to SMoV, resulting in severe losses both in fruit and runner yield. However, due to the absence of definitive symptoms in commercial varieties, the only effective means of detecting SMoV is by transmission to susceptible indicator plants. In this study, we describe a reverse transcription-polymerase chain reaction (RT-PCR) method for the detection of SMoV in Fragaria spp. with the use of primers specific for the noncoding regions (NCR) of both RNA1 and RNA2 of the virus. Using this method, all of 16 isolates from various geographical origins were positive for SMoV. Partial sequences of a 327-nt long coding region were obtained for the putative large coat protein of all isolates by RT-PCR using degenerate primers. Nucleotide identities between isolates ranged from 72.8 to 99.7%. A 546-nt sequence of the putative polymerase gene of nine isolates was obtained by RT-PCR and compared. Nucleotide identities ranged from 73.4 to 100%. There was a clear tendency for isolates to group according to their geographical origin. Sequence data obtained of the NCR show four completely conserved regions of 20 or more bases.

18.
J Endocrinol Invest ; 26(9): 832-7, 2003 Sep.
Article in English | MEDLINE | ID: mdl-14964434

ABSTRACT

This article summarizes recent advances in understanding the production and action of the hormone erythropoietin (Epo) with respect to high altitude physiology and sports medicine. Hypoxia is the main stimulus for Epo gene expression. An O2-labile protein (hypoxia-inducible factor 1, HIF-1) has been identified that is hydroxylated and degraded under normoxic conditions but active in hypoxia, where it enhances Epo gene transcription resulting in elevated hemoglobin levels and O2 capacity of the blood. The stimulation of Epo production at lowered arterial O2 tension can be maladaptive, if erythrocytosis develops such as seen in high altitude habitants. Within physiological limits the aerobic power increases in parallel with blood O2 capacity. Therefore, some elite athletes have misused recombinant human Epo (rhEpo), which is a beneficial anti-anemic drug in clinical practice. Indirect and direct methods to detect rhEpo doping have been recently developed.


Subject(s)
Altitude , Erythropoietin/pharmacology , Exercise/physiology , Oxygen/blood , Doping in Sports , Erythropoietin/biosynthesis , Hemoglobins , Humans , Hypoxia/physiopathology , Polycythemia , Sports Medicine
20.
J Virol Methods ; 99(1-2): 81-92, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11684306

ABSTRACT

Two multiplex RT-PCR assays with specific coamplification of plant mRNA as an internal control from total nucleic acids are described for the parallel detection of Apple chlorotic leaf spot virus, Apple stem pitting virus, Apple mosaic virus and Apple stem grooving virus. All are important economically and common pathogens in commercial apple and pear cultivars, except for Apple mosaic virus. Four virus specific primer pairs and one primer pair which allows the specific amplification of mRNA of the mitochondrial nad5 gene are described. Specificity of all primer pairs was confirmed by sequencing the RT-PCR products. A range of different virus isolates from various geographic origins could be detected by these multiplex RT-PCR assays all year round. Viruses were detected reliably in composite extracts at a ratio of one part total nucleic acid extract from an infected sample mixed with 39 parts of extract from healthy samples. The use of the internal control minimizes the risk of obtaining false negative RT-PCR results, which is desirable for routine testing, and avoids the need to eliminate contaminating DNA in extracts. To our knowledge, this is the first report on the use of a specific internal RNA control from total nucleic acids. The multiplex RT-PCR assays described are reliable, rapid and sensitive methods for the detection of these viruses, and may replace techniques need commonly like indexing by woody indicators or ELISA.


Subject(s)
Malus/virology , Plant Diseases/virology , Plant Viruses/isolation & purification , Reverse Transcriptase Polymerase Chain Reaction , Malus/genetics , Plant Viruses/genetics , RNA, Messenger/genetics , RNA, Plant/genetics , RNA, Viral/analysis , Reference Standards , Sensitivity and Specificity
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