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1.
Environ Sci Technol ; 56(19): 14109-14119, 2022 10 04.
Article in English | MEDLINE | ID: mdl-36126259

ABSTRACT

Iron (Fe)-based groundwater treatment removes carcinogenic arsenic (As) effectively but generates toxic As-rich Fe oxide water treatment residuals (As WTRs) that must be managed appropriately to prevent environmental contamination. In this study, we apply life cycle assessment (LCA) to compare the toxicity impacts of four common As WTR disposal strategies that have different infrastructure requirements and waste control: (i) landfilling, (ii) brick stabilization, (iii) mixture with organic waste, and (iv) open disposal. The As disposal toxicity impacts (functional unit = 1.0 kg As) are compared and benchmarked against impacts of current methods to produce marketable As compounds via As mining and concentrate processing. Landfilling had the lowest non-carcinogen toxicity (2.0 × 10-3 CTUh), carcinogen toxicity (3.8 × 10-5 CTUh), and ecotoxicity (4.6 × 103 CTUe) impacts of the four disposal strategies, with the largest toxicity source being As emission via sewer discharge of treated landfill leachate. Although landfilling had the lowest toxicity impacts, the stored toxicity of this strategy was substantial (ratio of stored toxicity/emitted As = 13), suggesting that landfill disposal simply converts direct As emissions to an impending As toxicity problem for future generations. The remaining disposal strategies, which are frequently practiced in low-income rural As-affected areas, performed poorly. These strategies yielded ∼3-10 times greater human toxicity and ecotoxicity impacts than landfilling. The significant drawbacks of each disposal strategy indicated by the LCA highlight the urgent need for new methods to recover As from WTRs and convert it into valuable As compounds. Such advanced As recovery technologies, which have not been documented previously, would decrease the stored As toxicity and As emissions from both WTR disposal and from mining As ore.


Subject(s)
Arsenic , Refuse Disposal , Water Pollutants, Chemical , Ferric Compounds , Humans , Iron , Oxides , Refuse Disposal/methods , Waste Disposal Facilities , Water Pollutants, Chemical/analysis , Water Pollutants, Chemical/toxicity
2.
Cardiovasc Pathol ; 50: 107288, 2021.
Article in English | MEDLINE | ID: mdl-32931920

ABSTRACT

Host response to an implanted biomaterial is a complex process involving microscopic changes in extracellular matrix (ECM) composition. Reliable pathology analysis is imperative for accurate assessment of the tissue response to an implanted device. Plastic histology is commonly used for histology evaluation of medical devices to assess the device-tissue interface; however, this technique is prone to variable staining that can confound histology interpretation. Appropriately, we propose using transmission electron microscopy (TEM) to confirm histologic ECM findings in order to provide sufficient host-response data. Tissue response to an absorbable shape memory polymer intravascular occlusion device with a nitinol wire backbone was evaluated. Representative plastic-embedded, micro-ground sections from 30-day, 60-day, and 90-day timepoints were analyzed. ECM regions were selected, and ultrathin sections were created for TEM evaluation. Histological changes in ECM composition were compared for light microscopy (LM) and TEM findings; specifically, TEM fibrillary patterns for collagen and fibrin were used to confirm LM results. Throughout this study, LM reveals inconsistent staining in plastic-embedded sections. TEM, on the other hand, provides clear insight into the tissue response by morphologically discerning distinct fibrillary patterns within ECM structures; loose to dense collagen surrounds the implant as fibrin degrades, demonstrating progression of postimplant ECM maturation. Moreover, TEM serves as a definitive method for confirming tissue substrate morphology when LM findings prove ambiguous.


Subject(s)
Extracellular Matrix/pathology , Foreign-Body Reaction/pathology , Hemostatic Techniques/instrumentation , Microscopy, Electron, Transmission , Vascular Closure Devices , Artifacts , Equipment Design , Extracellular Matrix/ultrastructure , Fibrillar Collagens/ultrastructure , Humans , Predictive Value of Tests , Reproducibility of Results , Time Factors , Treatment Outcome
3.
Sci Total Environ ; 706: 135710, 2020 Mar 01.
Article in English | MEDLINE | ID: mdl-31787292

ABSTRACT

An intensified debate centers on the use of strontium isotopes in surface water run-off as archive for bioavailable signatures in prehistoric provenance studies. Its use has been challenged by a recent suggestion that modern agricultural liming of farmlands exerts a serious imprint on the strontium isotope compositions of these waters. We here present results from a soil profile beneath agricultural farmland in the glaciogenic outwash plain of central West Jutland, Denmark, which show that strontium and its isotope composition derived from lime products is efficiently retained near the surface. Pore waters and bioavailable strontium from the acidic zone below the surface soil depict strontium isotope signatures that can best be explained by a mixture of silicate-derived and relic natural (not agriculturally added) carbonate-derived strontium. We therefore argue that agricultural liming does not contaminate groundwaters and groundwater-supported surface waters, rendering reference maps based on them relevant for modern and past provenance studies.

4.
Scand J Med Sci Sports ; 28(10): 2114-2122, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29777633

ABSTRACT

Due to a high prevalence of asthma and exercise-induced bronchoconstriction in elite athletes, there is a high use of beta2 -adrenoceptor agonists (beta2 -agonists) in the athletic population. While anabolic in rodents, no study has been able to detect hypertrophy in humans after chronic beta2 -agonist inhalation. We investigated whether inhaled beta2 -agonist, terbutaline, alters body composition and metabolic rate with and without concurrent exercise training in healthy young men. Sixty-seven participants completed a 4-week intervention of daily terbutaline (8 × 0.5 mg) or placebo treatment without concurrent training (habitual; n = 23), with resistance (n = 23) or endurance (n = 21) training 3 times weekly. Before and after the interventions, participant's body composition was determined by dual-energy X-ray absorptiometry and resting metabolic rate and substrate oxidation by indirect calorimetry. Terbutaline increased lean body mass by 1.03 kg (95% CI 0.29-1.76; P < .05) and 1.04 kg (95% CI 0.16-1.93; P < .05) compared to placebo in the habitual and resistance training group, respectively, but had no effect compared to placebo in the endurance training group [-0.56 kg (95% CI -1.74-0.62; P > .05)]. Fat mass, bone mineral content, and resting metabolic rate did not change differently between treatments with the intervention. Daily inhalation of terbutaline in near-therapeutic doses induces skeletal muscle growth. This observation should be a concern for antidoping authorities.


Subject(s)
Adrenergic beta-2 Receptor Agonists/administration & dosage , Body Composition , Exercise , Muscle, Skeletal/growth & development , Terbutaline/administration & dosage , Absorptiometry, Photon , Administration, Inhalation , Adult , Basal Metabolism , Double-Blind Method , Humans , Hypertrophy , Male , Muscle, Skeletal/drug effects , Physical Endurance , Resistance Training , Young Adult
5.
Scand J Med Sci Sports ; 27(7): 684-691, 2017 Jul.
Article in English | MEDLINE | ID: mdl-27060857

ABSTRACT

While chronic systemic administration of glucocorticoids increases muscle Na+ ,K+ ATPase content, such effect is unexplored after therapeutic inhalation. We investigated the effect of therapeutic inhalation of the glucocorticoid budesonide on Na+ ,K+ ATPase content of skeletal muscle in men. Ten healthy trained subjects, aged 23 ± 4 years (mean ± 95% CI), participated in the study. Before and after 2 weeks of daily inhalation of budesonide (1.6 mg/day), a biopsy was taken from the vastus lateralis muscle for measurement of Na+ ,K+ ATPase content and blood samples were drawn for determination of plasma budesonide, cortisol, and K+ . Subjects' performance during cycling to fatigue at 90% of incremental peak power output (iPPO) was measured in response to 4 mg inhaled terbutaline to maximally stimulate Na+ ,K+ ATPase activity. Plasma concentrations of budesonide rose to 5.0 ± 1.6 nM with the intervention, whereas no changes were observed in plasma cortisol. Muscle Na+ ,K+ ATPase content increased (P ≤ 0.01) by 46 ± 34 pmol/(g wet wt) (17% increase) with the intervention. Cycling performance at 90% of iPPO did not change (P = 0.21) with the intervention (203 vs 214 s) in response to terbutaline. The present observations show that therapeutic inhalation of glucocorticoids increases muscle Na+ ,K+ ATPase content, but does not enhance high-intensity cycling endurance in response to terbutaline.


Subject(s)
Budesonide/pharmacology , Exercise/physiology , Physical Endurance/drug effects , Quadriceps Muscle/drug effects , Sodium-Potassium-Exchanging ATPase/metabolism , Terbutaline/pharmacology , Administration, Inhalation , Adult , Biopsy , Budesonide/administration & dosage , Budesonide/blood , Humans , Hydrocortisone/blood , Longitudinal Studies , Male , Potassium/blood , Quadriceps Muscle/enzymology , Terbutaline/administration & dosage , Young Adult
6.
Scand J Med Sci Sports ; 27(7): 692-703, 2017 Jul.
Article in English | MEDLINE | ID: mdl-27167471

ABSTRACT

This study investigated the pharmacokinetics of inhaled terbutaline at rest and after exercise in normal and hot ambient conditions with respect to doping analysis. Thirteen trained young men participated in the study. Urine and blood samples were collected after inhalation of 4 mg terbutaline during three trials: exercise in hot ambient conditions (30-35 °C) (EXH), exercise in normal ambient conditions (20-25 °C) (EX), and rest (20-25 °C) (R). Exercise consisted of 130 min at various intensities. Adjustment of urine concentrations of terbutaline to a specific gravity (USG) of 1.02 g/mL was compared with no adjustment. Area under the serum concentration-time curve within the first 6 h was higher for EX (27 ± 3 ng/mL/h) (P ≤ 0.01) and EXH (25 ± 4 ng/mL/h) (P ≤ 0.05) than for R (20 ± 3 ng/mL/h). When unadjusted for USG, urine concentrations of terbutaline after 4 h were different in the order EXH > EX > R (P ≤ 0.01). When unadjusted for USG, urine concentrations of terbutaline were 299 ± 151 ng/mL higher (P ≤ 0.001) after 4 h compared with adjusted concentrations in EXH. Excretion rate of terbutaline was higher (P ≤ 0.001) for EX than for EXH and R within the first 0-1½ h. In conclusion, EXHs results in higher urine concentrations of terbutaline. This should be considered when evaluating doping cases of terbutaline.


Subject(s)
Exercise/physiology , Temperature , Terbutaline/pharmacokinetics , Administration, Inhalation , Adult , Cross-Over Studies , Doping in Sports , Humans , Male , Terbutaline/blood , Terbutaline/urine , Young Adult
7.
J Vet Intern Med ; 26(2): 259-68, 2012.
Article in English | MEDLINE | ID: mdl-22268374

ABSTRACT

BACKGROUND: Renal amyloidosis (RA) is a progressive and fatal renal disease. HYPOTHESIS: Clinical and pathologic manifestations of RA differ between Chinese Shar-Pei (CSPs) and non-Shar-Pei (NSPs) dogs. ANIMALS: 91 client-owned dogs. METHODS: Retrospective review of medical records of dogs with a histological diagnosis of RA. Clinical and clinicopathologic data, hospitalization, complications, and outcome were compared between CSPs and NSPs. RESULTS: Comorbid diseases were present in 64% of all dogs. CSPs were significantly younger compared to NSPs (median, 4.8 years; range: 3.6-17 versus median: 9.0 years; range: 2.4-11.1; P < .0001). The frequency of hypoalbuminemia, the most common biochemical abnormality, was higher in NSPs compared to CSPs (100% versus 64.7%, respectively; P < .001). Median serum creatinine concentration at presentation was 5.5 mg/dL, and was 3-fold higher in CSPs compared to NSPs (P = .005). Increased urine protein : creatinine ratio was present in 96% of all dogs. Nephrotic syndrome was present in 10% of NSPs but not in CSPs. Glomerular amyloid deposition, present in both CSPs (78.6%) and NSPs (95.6%) was most commonly diffuse, global, and severe. Renal medullar amyloidosis was more common in CSPs (100%) compared to NSPs (49.0%, P = .002), as was extrarenal amyloid deposition. The median survival time of all dogs was 5 days (range: 0-443 days). Serum creatinine concentration was significantly and negatively associated with survival (P = .025). CONCLUSIONS AND CLINICAL RELEVANCE: The clinical and pathologic manifestations of amyloidosis differ between CSPs and NSPs. The survival time observed herein was unexpectedly low, and argues for early surveillance and management of the underlying predisposing conditions.


Subject(s)
Amyloidosis/veterinary , Dog Diseases/pathology , Kidney Diseases/veterinary , Amyloidosis/blood , Amyloidosis/pathology , Amyloidosis/urine , Animals , Creatinine/blood , Creatinine/urine , Dog Diseases/blood , Dog Diseases/urine , Dogs , Female , Histocytochemistry/veterinary , Hypoalbuminemia/blood , Hypoalbuminemia/pathology , Hypoalbuminemia/urine , Hypoalbuminemia/veterinary , Kaplan-Meier Estimate , Kidney Diseases/blood , Kidney Diseases/pathology , Kidney Diseases/urine , Kidney Glomerulus/pathology , Male , Retrospective Studies
8.
Neuroimage ; 58(2): 665-74, 2011 Sep 15.
Article in English | MEDLINE | ID: mdl-21718792

ABSTRACT

Face-to-face communication works multimodally. Not only do we employ vocal and facial expressions; body language provides valuable information as well. Here we focused on multimodal perception of emotion expressions, monitoring the temporal unfolding of the interaction of different modalities in the electroencephalogram (EEG). In the auditory condition, participants listened to emotional interjections such as "ah", while they saw mute video clips containing emotional body language in the visual condition. In the audiovisual condition participants saw video clips with matching interjections. In all three conditions, the emotions "anger" and "fear", as well as non-emotional stimuli were used. The N100 amplitude was strongly reduced in the audiovisual compared to the auditory condition, suggesting a significant impact of visual information on early auditory processing. Furthermore, anger and fear expressions were distinct in the auditory but not the audiovisual condition. Complementing these event-related potential (ERP) findings, we report strong similarities in the alpha- and beta-band in the visual and the audiovisual conditions, suggesting a strong visual processing component in the perception of audiovisual stimuli. Overall, our results show an early interaction of modalities in emotional face-to-face communication using complex and highly natural stimuli.


Subject(s)
Emotions , Facial Expression , Kinesics , Social Perception , Voice/physiology , Acoustic Stimulation , Adult , Alpha Rhythm/physiology , Anger/physiology , Arousal/physiology , Beta Rhythm/physiology , Data Interpretation, Statistical , Electroencephalography , Evoked Potentials/physiology , Fear/physiology , Female , Humans , Male , Photic Stimulation , Psychomotor Performance/physiology , Young Adult
9.
Nat Struct Biol ; 8(9): 779-83, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11524681

ABSTRACT

The human pathogen Legionella pneumophila, the etiological agent of the severe and often fatal Legionnaires' disease, produces a major virulence factor, termed 'macrophage infectivity potentiator protein' (Mip), that is necessary for optimal multiplication of the bacteria within human alveolar macrophages. Mip exhibits a peptidyl prolyl cis-trans isomerase (PPIase) activity, which appears to be important for infection. Here we report the 2.4 A crystal structure of the Mip protein from L. pneumophila Philadelphia 1 and the 3.2 A crystal structure of its complex with the drug FK506. Each monomer of the homodimeric protein consists of an N-terminal dimerization module, a long (65 A) connecting alpha-helix and a C-terminal PPIase domain exhibiting similarity to human FK506-binding protein. In view of the recent significant increase in the number of reported cases of Legionnaires' disease and other intracellular infections, these structural results are of prime interest for the design of new drugs directed against Mip proteins of intracellular pathogens.


Subject(s)
Immunophilins/chemistry , Immunophilins/metabolism , Legionella pneumophila/enzymology , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Peptidylprolyl Isomerase/chemistry , Peptidylprolyl Isomerase/metabolism , Tacrolimus/metabolism , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/metabolism , Bacterial Proteins , Binding Sites , Crystallization , Crystallography, X-Ray , Dimerization , Legionnaires' Disease/microbiology , Models, Molecular , Protein Structure, Tertiary , Tacrolimus/chemistry , Zinc/metabolism
10.
J Pharmacol Exp Ther ; 297(2): 638-45, 2001 May.
Article in English | MEDLINE | ID: mdl-11303053

ABSTRACT

Celecoxib pharmacokinetics was evaluated after single and multiple oral dosing; after dosing in a solution and as a solid; with and without food; and after administration into different sites of the GI tract using dog. After oral dosing in a solution, celecoxib was rapidly absorbed and reached maximum concentrations by 1 h; absorption was delayed another 1 to 2 h when administered as a solid. The absolute bioavailability of celecoxib was higher when given as a solution (64--88%) compared with capsule (22--40%). The absorption of celecoxib given in a capsule was delayed by food, although systemic exposure increased by 3- to 5-fold. The systemic availability of celecoxib given intragastrically in solution was similar to that obtained following direct instillation into the duodenum, jejunum, or colon through a chronic intestinal access port. Collectively, these data suggest that celecoxib is a highly permeable drug that can be absorbed throughout the GI tract and that dissolution may be a rate-limiting factor for absorption from solid dosage forms. Unlike dogs, celecoxib given to humans with a high fat meal exhibits only a slight increase in AUC(0--infinity) (11%) that is not clinically significant with regard to safety or efficacy. In humans, a lower dose and a longer GI residence time may promote the opportunity for absorption of a poorly soluble drug such as celecoxib that can be absorbed throughout the GI tract. This would minimize the effect of food on absorption; as such, patients with arthritis can be given celecoxib with or without food.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/pharmacokinetics , Food-Drug Interactions , Intestinal Absorption/physiology , Sulfonamides/pharmacokinetics , Adult , Animals , Anti-Inflammatory Agents, Non-Steroidal/administration & dosage , Anti-Inflammatory Agents, Non-Steroidal/blood , Area Under Curve , Biological Availability , Celecoxib , Cross-Over Studies , Dietary Fats/pharmacology , Dogs , Female , Humans , Male , Pyrazoles , Sulfonamides/administration & dosage , Sulfonamides/blood
11.
Xenobiotica ; 30(7): 731-44, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10963063

ABSTRACT

1. The metabolism and excretion of celecoxib, a specific cyclooxygenase 2 (COX-2) inhibitor, was investigated in mouse, rabbit, the EM (extensive) and PM (poor metabolizer) dog, and rhesus and cynomolgus monkey. 2. Some sex and species differences were evident in the disposition of celecoxib. After intravenous (i.v.) administration of [14C]celecoxib, the major route of excretion of radioactivity in all species studied was via the faeces: EM dog (80.0%), PM dog (83.4%), cynomolgus monkey (63.5%), rhesus monkey (83.1%). After oral administration, faeces were the primary route of excretion in rabbit (72.2%) and the male mouse (71.1%), with the remainder of the dose excreted in the urine. After oral administration of [14C]celecoxib to the female mouse, radioactivity was eliminated equally in urine (45.7%) and faeces (46.7%). 3. Biotransformation of celecoxib occurs primarily by oxidation of the aromatic methyl group to form a hydroxymethyl metabolite, which is further oxidized to the carboxylic acid analogue. 4. An additional phase I metabolite (phenyl ring hydroxylation) and a glucuronide conjugate of the carboxylic acid metabolite was produced by rabbit. 5. The major excretion product in urine and faeces of mouse, rabbit, dog and monkey was the carboxylic acid metabolite of celecoxib.


Subject(s)
Cyclooxygenase Inhibitors/pharmacokinetics , Sulfonamides/pharmacokinetics , Animals , Celecoxib , Chromatography, High Pressure Liquid , Dogs , Feces/chemistry , Female , Macaca fascicularis , Macaca mulatta , Male , Mass Spectrometry , Mice , Pyrazoles , Rabbits , Species Specificity
12.
Drug Metab Dispos ; 28(5): 514-21, 2000 May.
Article in English | MEDLINE | ID: mdl-10772629

ABSTRACT

The pharmacokinetics, tissue distribution, metabolism, and excretion of celecoxib, 4-[5-(4-methylphenyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl] benzenesulfonamide, a cyclooxygenase-2 inhibitor, were investigated in rats. Celecoxib was metabolized extensively after i.v. administration of [(14)C]celecoxib, and elimination of unchanged compound was minor (less than 2%) in male and female rats. The only metabolism of celecoxib observed in rats was via a single oxidative pathway. The methyl group of celecoxib is first oxidized to a hydroxymethyl metabolite, followed by additional oxidation of the hydroxymethyl group to a carboxylic acid metabolite. Glucuronide conjugates of both the hydroxymethyl and carboxylic acid metabolites are formed. Total mean percent recovery of the radioactive dose was about 100% for both the male rat (9.6% in urine; 91.7% in feces) and the female rat (10.6% in urine; 91.3% in feces). After oral administration of [(14)C]celecoxib at doses of 20, 80, and 400 mg/kg, the majority of the radioactivity was excreted in the feces (88-94%) with the remainder of the dose excreted in the urine (7-10%). Both unchanged drug and the carboxylic acid metabolite of celecoxib were the major radioactive components excreted with the amount of celecoxib excreted in the feces increasing with dose. When administered orally, celecoxib was well distributed to the tissues examined with the highest concentrations of radioactivity found in the gastrointestinal tract. Maximal concentration of radioactivity was reached in most all tissues between 1 and 3 h postdose with the half-life paralleling that of plasma, with the exception of the gastrointestinal tract tissues.


Subject(s)
Anti-Inflammatory Agents, Non-Steroidal/pharmacokinetics , Sulfonamides/pharmacokinetics , Animals , Area Under Curve , Bile/metabolism , Bile Ducts/physiology , Biotransformation , Celecoxib , Chromatography, High Pressure Liquid , Feces/chemistry , Female , Half-Life , Injections, Intravenous , Male , Pyrazoles , Rats , Rats, Sprague-Dawley , Sulfonamides/administration & dosage , Tissue Distribution
13.
Protein Sci ; 7(7): 1575-82, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9684890

ABSTRACT

Reverse transcriptase is an essential retroviral enzyme that uses RNA- and DNA-directed DNA polymerase activities as well as an RNaseH activity to synthesize a double-stranded DNA copy of the single-stranded RNA genome. In an effort to obtain high-resolution structural information regarding the polymerase active site of reverse transcriptase, we have pursued studies on a catalytic fragment from Moloney murine leukemia virus reverse transcriptase. DNA encoding the catalytic fragment, defined originally by limited proteolytic digestion, has been cloned, and the protein has been expressed and purified from Escherichia coli. The fragment obtained by limited proteolytic digestion and the bacterially expressed fragnment retain polymerase activity. Crystallization studies involving nucleic acid complexes with a catalytic fragment from both sources are reported, including variables screened to improve crystals and cryocooling. Three crystal forms of catalytic fragment-nucleic acid complexes have been characterized, which all contain at least two protein molecules in the asymmetric unit. As isolated, the catalytic fragment is monomeric. This analysis indicates that the enzyme dimerizes in the presence of nucleic acid.


Subject(s)
Moloney murine leukemia virus/enzymology , Moloney murine leukemia virus/metabolism , Oligodeoxyribonucleotides/metabolism , RNA-Directed DNA Polymerase/chemistry , RNA-Directed DNA Polymerase/metabolism , Base Sequence , Binding Sites , Catalysis , Cloning, Molecular , Cross-Linking Reagents , Crystallization , Crystallography, X-Ray , DNA , Dimerization , Escherichia coli/genetics , Freezing , Glutaral , Molecular Weight , Oligodeoxyribonucleotides/chemical synthesis , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Peptide Hydrolases , RNA-Directed DNA Polymerase/biosynthesis , RNA-Directed DNA Polymerase/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Solubility
14.
Structure ; 3(9): 879-92, 1995 Sep 15.
Article in English | MEDLINE | ID: mdl-8535782

ABSTRACT

BACKGROUND: Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Although the overall organization of HIV-1 RT is known from previously reported crystal structures, no structure of a complex including a metal ion, which is essential for its catalytic activity, has been reported. RESULTS: Here we describe the structures at 1.8 Angstrum resolution of a catalytically active fragment of RT from Moloney murine leukemia virus (MMLV) and at 2.6 Angstrum of a complex of this fragment with Mn2+ coordinated in the polymerase active site. On the basis of similarities with HIV-1 RT and rat DNA polymerase beta, we have modeled template/primer and deoxyribonucleoside 5'-triphosphate substrates into the MMLV RT structure. CONCLUSIONS: Our model, in the context of the disposition of evolutionarily conserved residues seen here at high resolution, provides new insights into the mechanisms of catalysis, fidelity, processivity and discrimination between deoxyribose and ribose nucleotides.


Subject(s)
Moloney murine leukemia virus/enzymology , RNA-Directed DNA Polymerase/chemistry , RNA-Directed DNA Polymerase/metabolism , Amino Acid Sequence , Animals , Binding Sites , Crystallography, X-Ray , DNA Primers/chemistry , DNA Primers/metabolism , Deoxyribonucleotides/chemistry , Deoxyribonucleotides/metabolism , HIV-1/enzymology , Metals/metabolism , Mice , Models, Molecular , Molecular Sequence Data , Protein Conformation , Ribonucleoproteins/chemistry , Sequence Alignment
15.
JPEN J Parenter Enteral Nutr ; 19(5): 416-8, 1995.
Article in English | MEDLINE | ID: mdl-8577023

ABSTRACT

BACKGROUND: Occluded central venous lines (CVLs) is a major problem in pediatric patients. METHODS: To relieve obstructed catheters, infusions of ethanol (up to 3 mL of a 70% solution) for presumed lipid occlusions and hydrochloric acid (HCl, 0.1 N, up to 3 mL) for presumed mineral and drug precipitates were given in an attempt to relieve obstructed catheters. RESULTS: Patency was restored in 34 of 39 occluded catheters over an 18-month period. CONCLUSIONS: Clearing occluded CVLs with ethanol and HCl is not only beneficial to the patient but also offers considerable cost savings compared to CVL replacement.


Subject(s)
Catheterization, Central Venous/instrumentation , Ethanol/administration & dosage , Hydrochloric Acid/administration & dosage , Parenteral Nutrition, Total/instrumentation , Child , Equipment Failure , Humans , Parenteral Nutrition, Total/economics , Urokinase-Type Plasminogen Activator/administration & dosage
16.
Structure ; 3(4): 365-79, 1995 Apr 15.
Article in English | MEDLINE | ID: mdl-7542140

ABSTRACT

BACKGROUND: HIV-1 reverse transcriptase (RT) is a multifunctional enzyme that copies the RNA genome of HIV-1 into DNA. It is a heterodimer composed of a 66 kDa (p66) and a 51 kDa (p51) subunit. HIV-1 RT is a crucial target for structure-based drug design, and potent inhibitors have been identified, whose efficacy, however, is limited by drug resistance. RESULTS: The crystal structure of HIV-1 RT in complex with the non-nucleoside inhibitor alpha-anilinophenyl-acetamide (alpha-APA) R95845 has been determined at 2.8 A resolution. The inhibitor binds in a hydrophobic pocket near the polymerase active site. The pocket contains five aromatic amino acid residues and the interactions of the side chains of these residues with the aromatic rings of non-nucleoside inhibitors appear to be important for inhibitor binding. Most of the amino acid residues where mutations have been correlated with high levels of resistance to non-nucleoside inhibitors of HIV-1 RT are located close to alpha-APA. The overall fold of HIV-1 RT in complex with alpha-APA is similar to that found when in complex with nevirapine, another non-nucleoside inhibitor, but there are significant conformational changes relative to an HIV-1 RT/DNA/Fab complex. CONCLUSIONS: The non-nucleoside inhibitor-binding pocket has a flexible structure whose mobility may be required for effective polymerization, and may be part of a hinge that permits relative movements of two subdomains of the p66 subunit denoted the 'palm' and 'thumb'. An understanding of the structure of the inhibitor-binding pocket, of the interactions between HIV-1 RT and alpha-APA, and of the locations of mutations that confer resistance to inhibitors provides a basis for structure-based design of chemotherapeutic agents for the treatment of AIDS.


Subject(s)
Acetamides/metabolism , Acetophenones/metabolism , Antiviral Agents/metabolism , Models, Molecular , Protein Conformation , RNA-Directed DNA Polymerase/metabolism , Acetamides/chemistry , Acetamides/pharmacology , Acetophenones/chemistry , Acetophenones/pharmacology , Amino Acid Sequence , Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Binding Sites , Crystallography, X-Ray , Deoxyuracil Nucleotides/metabolism , Drug Resistance, Microbial , Fourier Analysis , HIV Antibodies/metabolism , HIV Reverse Transcriptase , Immunoglobulin Fab Fragments/metabolism , Methylmercury Compounds/metabolism , Molecular Sequence Data , Organomercury Compounds/metabolism , Protein Binding , RNA-Directed DNA Polymerase/chemistry , RNA-Directed DNA Polymerase/immunology , Reverse Transcriptase Inhibitors , Sequence Alignment , Sequence Homology, Amino Acid
17.
J Neurochem ; 59(4): 1336-43, 1992 Oct.
Article in English | MEDLINE | ID: mdl-1328520

ABSTRACT

Synapsin I, a prominent phosphoprotein in nerve terminals, is proposed to modulate exocytosis by interaction with the cytoplasmic surface of small synaptic vesicles and cytoskeletal elements in a phosphorylation-dependent manner. Tetanus toxin (TeTx), a potent inhibitor of neurotransmitter release, attenuated the depolarization-stimulated increase in synapsin I phosphorylation in rat cortical particles and in synaptosomes. TeTx also markedly decreased the translocation of synapsin I from the small synaptic vesicles and the cytoskeleton into the cytosol, on depolarization of synaptosomes. The effect of TeTx on synapsin I phosphorylation was both time and TeTx concentration dependent and required active toxin. One- and two-dimensional peptide maps of synapsin I with V8 proteinase and trypsin, respectively, showed no differences in the relative phosphorylation of peptides for the control and TeTx-treated synaptosomes, suggesting that both the calmodulin- and the cyclic AMP-dependent kinases that label this protein are equally affected. Phosphorylation of synapsin IIb and the B-50 protein (GAP43), a known substrate of protein kinase C, was also inhibited by TeTx. TeTx affected only a limited number of phosphoproteins and the calcium-dependent decrease in dephosphin phosphorylation remained unaffected. In vitro phosphorylation of proteins in lysed synaptosomes was not influenced by prior TeTx treatment of the intact synaptosomes or by the addition of TeTx to lysates, suggesting that the effect of TeTx on protein phosphorylation was indirect. Our data demonstrate that TeTx inhibits neurotransmitter release, the phosphorylation of a select group of phosphoproteins in nerve terminals, and the translocation of synapsin I. These findings contribute to our understanding of the basic mechanism of TeTx action.


Subject(s)
Cerebral Cortex/metabolism , Synapsins/metabolism , Synaptosomes/metabolism , Tetanus Toxin/pharmacology , Animals , Biological Transport/drug effects , Calcium-Calmodulin-Dependent Protein Kinases , Dose-Response Relationship, Drug , Electrophysiology , Osmolar Concentration , Phosphorylation , Protein Kinases/metabolism , Rats , Rats, Sprague-Dawley
18.
Article in English | MEDLINE | ID: mdl-1482862

ABSTRACT

Medical informatics could facilitate more effective analysis and use of clinical knowledge by means of expert systems. To be most effective, such systems should be constructed in a manner which is consistent with physicians' cognitive processes. Our past five years' work with a system called Iliad indicates that it provides effective medical training and education. The current research extends our previous work by using a wider array of training and test cases. We also evaluated whether training on specific cases could generalize to improved testing performance on related cases, which featured similar complaints and pathophysiologic mechanisms, but different final diagnoses. In their junior internal medicine clerkship, students (n = 100) completed 1300 Iliad training cases covering 48 diagnoses. The findings indicated improved problem solving on the specifically trained cases as well as the generalization cases. We discuss a possible training model for expert systems such as Iliad.


Subject(s)
Computer-Assisted Instruction , Expert Systems , Medical Informatics , Humans , Students, Medical
20.
J Med Syst ; 15(1): 93-110, 1991 Feb.
Article in English | MEDLINE | ID: mdl-1748852

ABSTRACT

Iliad is a computerized, expert system for internal medical diagnosis. The system is designed to teach diagnostic skills by means of simulated patient case presentations. We report the results of a controlled trial in which junior students were randomly assigned to received Iliad training on one of two different simulated case mixes. Each group was subsequently tested in both their "trained" and "untrained" case domain. The testing consisted of computerized, simulated patient cases for which no training feedback was provided. Outcome variables were designed to measure the students' performance on these test cases. The results indicate that students made fewer diagnostic errors and more conclusively confirmed their diagnostic hypotheses when they were tested in their trained domain. We conclude that expert systems such as Iliad can effectively teach diagnostic skills by supplementing trainees' actual case experience with computerized simulations.


Subject(s)
Decision Making, Computer-Assisted , Diagnosis, Computer-Assisted/instrumentation , Education, Medical , Expert Systems , Clinical Clerkship , Computer Simulation , Database Management Systems , Diagnostic Errors , Humans , Microcomputers , Software
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