Pneumonia Detection Using an Improved Algorithm Based on Faster R-CNN.

Pneumonia remains a threat to human health; the coronavirus disease 2019 (COVID-19) that began at the end of 2019 had a major impact on the world. It is still raging in many countries and has caused great losses to people's lives and property. In this paper, we present a method based on DeepConv-DilatedNet of identifying and localizing pneumonia in chest X-ray (CXR) images. Two-stage detector Faster R-CNN is adopted as the structure of a network. Feature Pyramid Network (FPN) is integrated into the residual neural network of a dilated bottleneck so that the deep features are expanded to preserve the deep feature and position information of the object. In the case of DeepConv-DilatedNet, the deconvolution network is used to restore high-level feature maps into its original size, and the target information is further retained. On the other hand, DeepConv-DilatedNet uses a popular fully convolution architecture with computation shared on the entire image. Then, Soft-NMS is used to screen boxes and ensure sample quality. Also, K-Means++ is used to generate anchor boxes to improve the localization accuracy. The algorithm obtained 39.23% Mean Average Precision (mAP) on the X-ray image dataset from the Radiological Society of North America (RSNA) and got 38.02% Mean Average Precision (mAP) on the ChestX-ray14 dataset, surpassing other detection algorithms. So, in this paper, an improved algorithm that can provide doctors with location information of pneumonia lesions is proposed.

Optimization of Sparse Cross Array Synthesis via Perturbed Convex Optimization.

Three-dimensional (3-D) imaging sonar systems require large planar arrays, which incur hardware costs. In contrast, a cross array consisting of two perpendicular linear arrays can also support 3-D imaging while dramatically reducing the number of sensors. Moreover, the use of an aperiodic sparse array can further reduce the number of sensors efficiently. In this paper, an optimized method for sparse cross array synthesis is proposed. First, the beamforming of a cross array based on a multi-frequency algorithm is simplified for both near-field and far-field. Next, a perturbed convex optimization algorithm is proposed for sparse cross array synthesis. The method based on convex optimization utilizes a first-order Taylor expansion to create position perturbations that can optimize the beam pattern and minimize the number of active sensors. Finally, a cross array with 100 + 100 sensors is employed from which a sparse cross array with 45 + 45 sensors is obtained via the proposed method. The experimental results show that the proposed method is more effective than existing methods for obtaining optimum results for sparse cross array synthesis in both the near-field and far-field.

Foreground Gating and Background Refining Network for Surveillance Object Detection.

Detecting objects in surveillance videos is an important problem due to its wide applications in traffic control and public security. Existing methods tend to face performance degradation because of false positive or misalignment problems. We propose a novel framework, namely, Foreground Gating and Background Refining Network (FG-BR Net), for surveillance object detection (SOD). To reduce false positives in background regions, which is a critical problem in SOD, we introduce a new module that first subtracts the background of a video sequence and then generates high-quality region proposals. Unlike previous background subtraction methods that may wrongly remove the static foreground objects in a frame, a feedback connection from detection results to background subtraction process is proposed in our model to distill both static and moving objects in surveillance videos. Furthermore, we introduce another module, namely, the background refining stage, to refine the detection results with more accurate localizations. Pairwise non-local operations are adopted to cope with the misalignments between the features of original and background frames. Extensive experiments on real-world traffic surveillance benchmarks demonstrate the competitive performance of the proposed FG-BR Net. In particular, FG-BR Net ranks on the top among all the methods on hard and sunny subsets of the UA-DETRAC detection dataset, without any bells and whistles.

[Correlation Analysis Between Characteristics of VOCs and Ozone Formation Potential in Summer in Nanjing Urban District].

Volatile organic compounds (VOCs) is an important precursor of photochemical ozone pollution (O3) in the atmosphere. Their concentration variation directly affects the characteristics of the ozone pollution. The concentration, speciation of VOCs, ozone and its precursors in Nanjing were analyzed and measured using online gas detection systems in August 2013. VOCs/NOx discriminant method was used to get the sensitive control factors of ozone. The results showed that the averaged volume fraction of VOCs was 52. 05 x 10(-9), and the largest one reached 200 x 10(-9) in Nanjing urban district. The order of volume fraction of each species VOCs was alkane > oxygen-containing VOCs > alkene > aromatics. The averaged concentration of ozone was 76.5 microg x m(-1) and the exceeding concentration of hourly standard was 5.9%. The change trends of ozone precursors VOCs and NOx were basically identical and Ozone showed the obvious negative correlation during the period of high concentrations of ozone. There were some differences in the concentrations of the same VOCs in different ozone concentration periods. The ozone generation in Nanjing urban district was sensitive to VOCs, and Nanjing belonged to VOCs control area in summer.

Characterizing and Differentiating Brain State Dynamics via Hidden Markov Models.

Functional connectivity measured from resting state fMRI (R-fMRI) data has been widely used to examine the brain's functional activities and has been recently used to characterize and differentiate brain conditions. However, the dynamical transition patterns of the brain's functional states have been less explored. In this work, we propose a novel computational framework to quantitatively characterize the brain state dynamics via hidden Markov models (HMMs) learned from the observations of temporally dynamic functional connectomics, denoted as functional connectome states. The framework has been applied to the R-fMRI dataset including 44 post-traumatic stress disorder (PTSD) patients and 51 normal control (NC) subjects. Experimental results show that both PTSD and NC brains were undergoing remarkable changes in resting state and mainly transiting amongst a few brain states. Interestingly, further prediction with the best-matched HMM demonstrates that PTSD would enter into, but could not disengage from, a negative mood state. Importantly, 84% of PTSD patients and 86% of NC subjects are successfully classified via multiple HMMs using majority voting.

Atomic connectomics signatures for characterization and differentiation of mild cognitive impairment.

In recent years, functional connectomics signatures have been shown to be a very valuable tool in characterizing and differentiating brain disorders from normal controls. However, if the functional connectivity alterations in a brain disease are localized within sub-networks of a connectome, then accurate identification of such disease-specific sub-networks is critical and this capability entails both fine-granularity definition of connectome nodes and effective clustering of connectome nodes into disease-specific and non-disease-specific sub-networks. In this work, we adopted the recently developed DICCCOL (dense individualized and common connectivity-based cortical landmarks) system as a fine-granularity high-resolution connectome construction method to deal with the first issue, and employed an effective variant of non-negative matrix factorization (NMF) method to pinpoint disease-specific sub-networks, which we called atomic connectomics signatures in this work. We have implemented and applied this novel framework to two mild cognitive impairment (MCI) datasets from two different research centers, and our experimental results demonstrated that the derived atomic connectomics signatures can effectively characterize and differentiate MCI patients from their normal controls. In general, our work contributed a novel computational framework for deriving descriptive and distinctive atomic connectomics signatures in brain disorders.

Atomic dynamic functional interaction patterns for characterization of ADHD.

Modeling abnormal temporal dynamics of functional interactions in psychiatric disorders has been of great interest in the neuroimaging field, and thus a variety of methods have been proposed so far. However, the temporal dynamics and disease-related abnormalities of functional interactions within specific data-driven discovered subnetworks have been rarely explored yet. In this work, we propose a novel computational framework composed of an effective Bayesian connectivity change point model for modeling functional brain interactions and their dynamics simultaneously and an effective variant of nonnegative matrix factorization for assessing the functional interaction abnormalities within subnetworks. This framework has been applied on the resting state fmagnetic resonance imaging (fMRI) datasets of 23 children with attention-deficit/hyperactivity disorder (ADHD) and 45 normal control (NC) children, and has revealed two atomic functional interaction patterns (AFIPs) discovered for ADHD and another two AFIPs derived for NC. Together, these four AFIPs could be grouped into two pairs, one common pair representing the common AFIPs in ADHD and NC, and the other abnormal pair representing the abnormal AFIPs in ADHD. Interestingly, by comparing the abnormal AFIP pair, two data-driven abnormal functional subnetworks are derived. Strikingly, by evaluating the approximation based on the four AFIPs, all of the ADHD children were successfully differentiated from NCs without any false positive.

[Exploration on correlation of syndrome proteomics and syndromatology of TCM].

The advent of the Post-Human Genome Project Era, represented by the raising of proteomics, would inevitably lead to the change of molecular biology from topical view to holistic with its thought turning from linear to complex mode. Based on the proteomics development in recent years, the authors summarized the methodology of TCM syndromatologic research, advocated in using two-dimensional gel electrophoresis (2-DE) and bioinformatics to identify different proteins. Proteomics should be led into the research of TCM syndrome categorization and the rule of evolution, which is necessary for researching the integration of the TCM study with proteomics and even with modern molecular biology based on molecular epidemiology level. Owing to the gradually developed coherence and mutual penetration of proteomics and TCM on the thinking method in studying life science, it has denoted the necessity and importance of integration of TCM and Western medicine in investigating the complex vital life phenomena.