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1.
FEMS Microbiol Ecol ; 76(2): 278-88, 2011 May.
Article in English | MEDLINE | ID: mdl-21284679

ABSTRACT

The effect of nitrate, acetate, and hydrogen on native perchlorate-reducing bacteria (PRB) was examined by conducting microcosm tests using vadose soil collected from a perchlorate-contaminated site. The rate of perchlorate reduction was enhanced by hydrogen amendment and inhibited by acetate amendment, compared with unamendment. Nitrate was reduced before perchlorate in all amendments. In hydrogen-amended and unamended soils, nitrate delayed perchlorate reduction, suggesting that the PRB preferentially use nitrate as an electron acceptor. In contrast, nitrate eliminated the inhibitory effect of acetate amendment on perchlorate reduction and increased the rate and the extent, possibly because the preceding nitrate reduction/denitrification decreased the acetate concentration that was inhibitory to the native PRB. In hydrogen-amended and unamended soils, perchlorate reductase gene (pcrA) copies, representing PRB densities, increased with either perchlorate or nitrate reduction, suggesting that either perchlorate or nitrate stimulates the growth of the PRB. In contrast, in acetate-amended soil pcrA increased only when perchlorate was depleted: a large portion of the PRB may have not utilized nitrate in this amendment. Nitrate addition did not alter the distribution of the dominant pcrA clones in hydrogen-amended soil, likely because of the functional redundancy of PRB as nitrate-reducers/denitrifiers, whereas acetate selected different pcrA clones from those with hydrogen amendment.


Subject(s)
Acetates/metabolism , Bacteria/metabolism , Hydrogen/metabolism , Nitrates/metabolism , Perchlorates/metabolism , Soil Microbiology , Bacteria/genetics , Biodegradation, Environmental , DNA, Bacterial/genetics , Denitrification , Oxidation-Reduction , Oxidoreductases/genetics , RNA, Ribosomal, 16S/genetics , Soil/chemistry , Soil Pollutants/metabolism
2.
Appl Environ Microbiol ; 74(6): 1941-4, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18245250

ABSTRACT

A quantitative real-time PCR assay targeting the pcrA gene, encoding the catalytic subunit of perchlorate reductase, detected pcrA genes from perchlorate-reducing bacteria in three different genera and from soil microbial communities. Partial pcrA sequences indicated differences in the composition of perchlorate-reducing bacterial communities following exposure to different electron donors.


Subject(s)
Bacteria/genetics , Bacterial Proteins/genetics , Oxidoreductases/genetics , Perchlorates/metabolism , Polymerase Chain Reaction/methods , Amino Acid Sequence , Bacteria/classification , Bacteria/metabolism , Bacterial Proteins/metabolism , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Molecular Sequence Data , Oxidation-Reduction , Oxidoreductases/metabolism , Phylogeny , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Soil Microbiology
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