Selective Methylation of Nucleosides via an In Situ Generated Methyl Oxonium.

A very mild and efficient procedure has been developed for the preparation of N-methylated uridine, pseudouridine, guanosine and inosine derivatives. This process was compatible with free hydroxyls within the ribose and did not require precautions on the protection or deprotection of other functionalities. The key to this extremely mild methylation without protection relied on the in situ generated methyl oxonium from the Wittig reagent and methanol. A putative mechanism for the selective methylation was also proposed.

Mg-Fe Bonding in the MgFe(CO)n+ (n = 4-9) Cation Complexes: An Infrared Photodissociation Spectroscopic and Theoretical Study.

Heteronuclear magnesium-iron carbonyl cation complexes MgFe(CO)n+ (n = 4-9) are prepared in the gas phase and are detected by mass-selected infrared photodissociation spectroscopy in the carbonyl stretching frequency region. The geometric structures and the metal-metal bonding are discussed with the aid of quantum chemical calculations. The MgFe(CO)9+ cation is a coordinatively saturated complex. Each complex is characterized to contain more than one isomer. The small complexes (n = 4-6) possess the Mg-Fe bonded [(OC)n-4Mg-Fe(CO)4]+ and/or [(OC)n-5Mg-Fe(CO)5]+ structures with all the carbonyl ligands terminally bonded. For the larger complexes with n = 7-9, the [(OC)n-4Mg-Fe(CO)4]+ structure is the major isomer experimentally observed. In addition, the [(OC)n-5Mg-OC-Fe(CO)4]+ isomer involving a linear bridging carbonyl ligand is also characterized. Bonding analyses indicate that each [(OC)n-4Mg-Fe(CO)4]+ complex contains a Mg-Fe electron-sharing σ bond. The metal-metal bond is described as a Mg(+I)-Fe(0) bond in MgFe(CO)4+ and as a Mg(+II)-Fe(-I) bond in the larger n = 5-9 complexes.

Mg(I)-Fe(-II) and Mg(0)-Mg(I) covalent bonding in the MgnFe(CO)4- (n = 1, 2) anion complexes: an infrared photodissociation spectroscopic and theoretical study.

Heteronuclear magnesium-iron carbonyl anion complexes MgFe(CO)4- and Mg2Fe(CO)4- are produced in the gas phase and are detected by mass-selected infrared photodissociation spectroscopy in the carbonyl stretching frequency region. The geometric structures and the metal-metal bonding are discussed with the aid of quantum chemical calculations. Both complexes are characterized to have a doublet electronic ground state with C3v symmetry containing a Mg-Fe bond or a Mg-Mg-Fe bonding unit. Bonding analyses indicate that each complex involves an electron-sharing Mg(I)-Fe(-II) σ bond. The Mg2Fe(CO)4- complex involves a relatively weak covalent Mg(0)-Mg(I) σ bond.

Human IFNAR2 Mutant Generated by CRISPR/Cas9-Induced Exon Skipping Upregulates a Subset of Tonic-Like Interferon-Stimulated Genes Upon IFNß Stimulation.

Type I interferons (IFN-Is) play central roles in regulating immune responses. The role of IFNAR2 in IFN-I signaling is an open question since a previous report showed that IFNß was still functional in the absence of IFNAR2 in mice. In this study, we report that IFN-I signaling in human monocyte-derived THP1 cells absolutely depends on IFNAR2, as determined by using a knockout mutant made by CRISPR/Cas9. Additionally, we demonstrated that a 7-bp deletion mutant (Δ7) of IFNAR2 remains responsive to IFNß stimulation and upregulates a subset of interferon-stimulated genes (s-ISGs). The s-ISGs largely overlap with tonic ISGs, which depend on the basal expression level of IFN-I. We also showed that IFN signaling in Δ7 still depends on IFNAR2. Then, we found that the 7-bp deletion in the genome results in the loss of the entire third exon (42 bp) from the mRNA and in the expression of a functionally impaired IFNAR2. These findings clarified the requirement of IFNAR2 for human IFN-I signaling and highlighted that caution should be used with CRISPR/Cas9 technology to prevent misleading interpretations caused by residual protein expression due to exon skipping or other mechanisms.

Photo-Facilitated Detection and Sequencing of 5-Formylcytidine RNA.

5-Formylcytidine (f5 C) is one of the epigenetic nucleotides in tRNA. Despite the evident importance of f5 C in gene expression regulation, little is known about its exact amount and position. To capture this information, we developed a modification-specific functionalization with a semi-stabilized ylide. The chemical labelling exhibited a high selectivity towards f5 C and allowed distinction from similar 5-formyluridine. We realized a detection strategy based on the fluorescence signal of the cyclization product 4,5-pyridin-2-amine-cytidine paC, which exhibited a high quantum yield. The results clearly identified f5 C with a limit of detection at 0.58 nM. This method altered the hydrogen bonding activities of f5 C and modulated its reverse transcription signature in its sequencing profile. We showed that f5 C can be detected from tRNA segments with a single-base resolution. Taken together, this approach is a sensitive, antibody-free, and applicable detection and sequencing method for f5 C-containing RNA.

Significant π bonding in coinage metal complexes OCTMCCO- from infrared photodissociation spectroscopy and theoretical calculations.

A series of coinage metal complexes in the form of TMC(CO)n - (TM = Cu, Ag, Au; n = 0-3) were generated using a laser-ablation supersonic expansion ion source in the gas phase. Mass-selected infrared photodissociation spectroscopy in conjunction with quantum chemical calculations indicated that the TMC(CO)3 - complexes contain a linear OCTMCCO- core anion. Bonding analyses suggest that the linear OCTMCCO- anions are better described as the bonding interactions between a singlet ground state TM+ metal cation and the OC/CCO2- ligands in the singlet ground state. In addition to the strong ligands to metal σ donation bonding components, the π-bonding components also contribute significantly to the metal-ligand bonds due to the synergetic effects of the CO and CCO2- ligands. The strengths of the bonding of the three metals show a V-shaped trend in which the second-row transition metal Ag exhibits the weakest interactions whereas the third-row transition metal Au shows the strongest interactions due to relativistic effects.

Infrared spectroscopy of Be(CO2)4+ in the gas phase: electron transfer and C-C coupling of CO2.

Beryllium-carbon dioxide cation complexes Be(CO2)n+ are produced by a laser vaporization-supersonic expansion ion source in the gas phase. Mass-selected infrared photodissociation spectroscopy supplemented by theoretical calculations confirms that Be(CO2)4+ is a coordination saturated complex that can be assigned to a mixture of two isomers. The first structure involves a bent CO2- ligand that is bound in a monodentate η1-O coordination mode. Another isomer has a metal oxalate-type C2O4- moiety with a C-C hemibond.

Quadruple C-H Bond Activations of Methane by Dinuclear Rhodium Carbide Cation [Rh2C3].

The structure of the [Rh2C3]+ ion and its reaction with CH4 in the gas phase have been studied by infrared photodissociation spectroscopy and mass spectrometry in conjunction with quantum chemical calculations. The [Rh2C3]+ ion is characterized to have an unsymmetrical linear [Rh-C-C-C-Rh]+ structure existing in two nearly isoenergetic spin states. The [Rh2C3]+ ion reacts with CH4 at room temperature to form [Rh2C]+ + C3H4 and [Rh2C2H2]+ + C2H2 as the major products. In addition to the [Rh2C]+ ion, the [Rh2 13C]+ ion is formed at about one-half of the [Rh2C]+ intensity when the isotopic-labeled 13CH4 sample is used. The production of [Rh2 13C]+ indicates that the linear C3 moiety of [Rh2C3]+ can be replaced by the bare carbon atom of methane with all four C-H bonds being activated. The calculations suggest that the overall reactions are thermodynamically exothermic, and that the two Rh centers are the reactive sites for C-H bond activation and hydrogen atom transfer reactions.

Trimodal Ratiometric Luminescent Thermometer Covering Three Near-Infrared Transparency Windows.

Near-infrared (NIR) transparency windows have evoked considerable interest in biomedical thermal imaging owing to the superior tissue penetration and the high signal-to-noise ratio, allowing in vivo real-time temperature reading with nanometric spatial resolution. Here, we develop a multimode nonintrusive luminescent thermometer based on the Y3Al5O12 (YAG):Cr3+/Ln3+ (Ln = Ho, Er, Yb) phosphor, which covers three NIR biological transparency windows, enabling cross-checking readings with high sensitivity and a high penetration depth. Utilizing the energy transfer between lanthanide ions and transition-metal ions, the Cr3+/Ln3+-activated upconversion emissions provide ideal signals for ratiometric luminescent thermometry of the NIR-I mode. The phonon-assisted downshifting emissions of Er3+/Ho3+ are used to construct the NIR-III/II mode, and the NIR-III mode is based on the thermal coupling between stark levels of 4I13/2 (Er3+). Three independent modes show distinct thermometric performance in different NIR transparency windows and temperature ranges, and the combination of the three modes is conducive to obtain more accurate temperature readings in a broad temperature range, which paves the way toward versatile luminescent thermometers.

Investigation of high-concentration doping performance based on Er3+-ion-doped Ba6Gd2Ti4O17.

Recently, various strategies have been explored during research into the use of lanthanide-doped luminescent materials to mitigate energy loss at elevated dopant concentrations. Herein we report Yb3+/Er3+ co-doped Ba6Gd2Ti4O17 (BGTO) phosphors with a laminated lattice structure, which can allow the high-concentration doping of Er3+ ions into the oxide. Detailed investigations into the luminescence properties and crystal structures of Yb3+/Er3+ co-doped BGTO reveal that an increase in the dopant concentration is associated with the dimensional limitation of energy transfer in the crystal lattice. This finding may provide a novel avenue for the construction of high-dopant-concentration UC luminescent materials.

A Light-Controllable Chemical Modulation of m6 A RNA Methylation.

Bioactive small molecules with photo-removable protecting groups have provided spatial and temporal control of corresponding biological effects. We present the design, synthesis, computational and experimental evaluation of the first photo-activatable small-molecule methyltransferase agonist. By blocking the functional N-H group on MPCH with a photo-removable ortho-nitrobenzyl moiety, we have developed a promising photo-caged compound that had completely concealed its biological activity. Short UV light exposure of cells treated with that caged molecule in a few minutes resulted in a considerable hypermethylation of m6 A modification in transcriptome RNAs, implicating a rapid release of the parent active compound. This study validates for the first time the photo-activatable small organic molecular concept in the field of RNA epigenetic research, which represents a novel tool in spatiotemporal and cellular modulation approaches.

Highly Coordinated Heteronuclear Calcium-Iron Carbonyl Cation Complexes [CaFe(CO)n ]+ (n=5-12) with d-d Bonding.

Heteronuclear calcium-iron carbonyl cation complexes in the form of [CaFe(CO)n ]+ (n=5-12) are produced in the gas phase. Infrared photodissociation spectroscopy in conjunction with quantum chemical calculations confirm that the n=10 complex is the coordination saturated ion where a Fe(CO)4 fragment is bonded with a Ca(CO)6 fragment through two side-on bridging carbonyl ligands. Bonding analysis indicates that it is best described by the bonding interactions between a [Ca(CO)6 ]2+ dication and an [Fe(CO)4 ]- anion forming a Fe→Ca d-d dative bond in the [(CO)6 Ca-Fe(CO)4 ]+ structure, which enriches the pool of experimentally observed complexes of calcium that mimic transition metal compounds. The molecule is the first example of a heteronuclear carbonyl complex featuring a d-d bond between calcium and a transition metal.

A Homoleptic Beryllium Carbonyl Complex with an End-On and Side-On Bridging Carbonyl Ligand.

Homoleptic dinuclear beryllium carbonyl cation complexes have been produced and characterized in the gas phase. Infrared photodissociation spectroscopic and theoretical results confirm that Be2 (CO)5 + is a coordination saturated complex that can be assigned to a mixture of two almost isoenergetic structural isomers. Besides a beryllium-beryllium single-bonded (OC)2 Be-Be(CO)3 + isomer, another structure involving an unusual end-on and side-on bridging carbonyl ligand with very low carbonyl stretching frequency is identified.

A NaI/H2O2-Mediated Sulfenylation and Selenylation of Unprotected Uracil and Its Derivatives.

An efficient iodide-catalyzed/hydrogen peroxide mediated sulfenylation and selenylation of unprotected uracil and its derivatives with simple thiols and diselenides was established. This coupling tolerates a broad variety of functional groups to provide diverse 5-sulfur/selenium-substituted uracil derivatives in good to excellent yields (up to 93%).

Octacarbonyl Anion Complexes of the Late Lanthanides Ln(CO)8 - (Ln=Tm, Yb, Lu) and the 32-Electron Rule.

The lanthanide octacarbonyl anion complexes Ln(CO)8 - (Ln=Tm, Yb, Lu) were produced in the gas phase and detected by mass-selected infrared photodissociation spectroscopy in the carbonyl stretching-frequency region. By comparison of the experimental CO-stretching frequencies with calculated data, which are strongly red-shifted with respect to free CO, the Yb(CO)8 - and Lu(CO)8 - complexes were determined to possess octahedral (Oh ) symmetry and a doublet X2 A2u (Yb) and singlet X1 A1g (Lu) electronic ground state, whereas Tm(CO)8 - exhibits a D4h equilibrium geometry and a triplet X3 B1g ground state. The analysis of the electronic structures revealed that the metal-CO attractive forces come mainly from covalent orbital interactions, which are dominated by [Ln(d)]→(CO)8 π backdonation and [Ln(d)]←(CO)8 σ donation (contributes ≈77 and 16 % to covalent bonding, respectively). The metal f orbitals play a very minor role in the bonding. The electronic structure of all three lanthanide complexes obeys the 32-electron rule if only those electrons that occupy the valence orbitals of the metal are considered.

Iodide/H2O2 Catalyzed Intramolecular Oxidative Amination for the Synthesis of 3,2'-Pyrrolidinyl Spirooxindoles.

An ammonium iodide/hydrogen peroxide-mediated intramolecular oxidative amination of 3-aminoalkyl-2-oxindoles was achieved, affording the corresponding 3,2'-pyrrolidinyl spirooxindoles and their 6- or 7-membered analogous in moderate to high yields. This metal-free procedure features very mild reaction conditions, non-toxicity and easily handled hydrogen peroxide as a clean oxidant.

Observation of alkaline earth complexes M(CO)8 (M = Ca, Sr, or Ba) that mimic transition metals.

The alkaline earth metals calcium (Ca), strontium (Sr), and barium (Ba) typically engage in chemical bonding as classical main-group elements through their ns and np valence orbitals, where n is the principal quantum number. Here we report the isolation and spectroscopic characterization of eight-coordinate carbonyl complexes M(CO)8 (where M = Ca, Sr, or Ba) in a low-temperature neon matrix. Analysis of the electronic structure of these cubic Oh -symmetric complexes reveals that the metal-carbon monoxide (CO) bonds arise mainly from [M(dπ)] → (CO)8 π backdonation, which explains the strong observed red shift of the C-O stretching frequencies. The corresponding radical cation complexes were also prepared in gas phase and characterized by mass-selected infrared photodissociation spectroscopy, confirming adherence to the 18-electron rule more conventionally associated with transition metal chemistry.

Ruthenium-Catalyzed Decarboxylative C-H Alkenylation in Aqueous Media: Synthesis of Tetrahydropyridoindoles.

We disclose herein a Ru(II)-catalyzed decarboxylative and oxidative coupling of N-substituted indolyl carboxylic acids with broad substrate scope in an aqueous solution. This method provides a sustainable and efficient access to synthesize various indole-fused cyclohexanyl acetic acids under mild conditions.

Octacarbonyl Anion Complexes of Group Three Transition Metals [TM(CO)8 ]- (TM=Sc, Y, La) and the 18-Electron Rule.

We report the gas-phase synthesis of stable 20-electron carbonyl anion complexes of group 3 transition metals, TM(CO)8- (TM=Sc, Y, La), which are studied by mass-selected infrared (IR) photodissociation spectroscopy. The experimentally observed species, which are the first octacarbonyl anionic complexes of a TM, are identified by comparison of the measured and calculated IR spectra. Quantum chemical calculations show that the molecules have a cubic (Oh ) equilibrium geometry and a singlet (1 A1g ) electronic ground state. The 20-electron systems TM(CO)8- are energetically stable toward loss of one CO ligand, yielding the 18-electron complexes TM(CO)7- in the 1 A1 electronic ground state; these exhibit a capped octahedral structure with C3v symmetry. Analysis of the electronic structure of TM(CO)8- reveals that there is one occupied valence molecular orbital with a2u symmetry, which is formed only by ligand orbitals without a contribution from the metal atomic orbitals. The adducts of TM(CO)8- fulfill the 18-electron rule when only those valence electrons that occupy metal-ligand bonding orbitals are considered.

Human Blood CD1c+ Dendritic Cells Encompass CD5high and CD5low Subsets That Differ Significantly in Phenotype, Gene Expression, and Functions.

There are three major dendritic cell (DC) subsets in both humans and mice, that is, plasmacytoid DCs and two types of conventional DCs (cDCs), cDC1s and cDC2s. cDC2s are important for polarizing CD4+ naive T cells into different subsets, including Th1, Th2, Th17, Th22, and regulatory T cells. In mice, cDC2s can be further divided into phenotypically and functionally distinct subgroups. However, subsets of human cDC2s have not been reported. In the present study, we showed that human blood CD1c+ cDCs (cDC2s) can be further separated into two subpopulations according to their CD5 expression status. Comparative transcriptome analyses showed that the CD5high DCs expressed higher levels of cDC2-specific genes, including IFN regulatory factor 4, which is essential for the cDC2 development and its migration to lymph nodes. In contrast, CD5low DCs preferentially expressed monocyte-related genes, including the lineage-specific transcription factor MAFB. Furthermore, compared with the CD5low subpopulation, the CD5high subpopulation showed stronger migration toward CCL21 and overrepresentation among migratory DCs in lymph nodes. Additionally, the CD5high DCs induced naive T cell proliferation more potently than did the CD5low DCs. Moreover, CD5high DCs induced higher levels of IL-10-, IL-22-, and IL-4-producing T cell formation, whereas CD5low DCs induced higher levels of IFN-γ-producing T cell formation. Thus, we show that human blood CD1c+ cDC2s encompass two subsets that differ significantly in phenotype, that is, gene expression and functions. We propose that these two subsets of human cDC2s could potentially play contrasting roles in immunity or tolerance.