Increase in the photoreactivity of uracil derivatives by doubling thionation.

The ability of 4-thiouracil to strongly absorb UVA radiation and to populate a reactive triplet state in high yield has enabled its use as a versatile photocrosslinker for nearly 50 years. In this contribution, we present a detailed spectroscopic and photochemical investigation of the 2-thiouracil, 4-thiouracil, and 2,4-dithiouracil series in an effort to further advance this chemistry and to scrutinize the photoreactivity of 2,4-dithiouracil. Our results reveal that excitation of 2,4-dithiouracil leads to intersystem crossing to the triplet manifold in 220 ± 40 fs, which enables the population of the reactive triplet state with near unity yield (ΦT = 0.90 ± 0.15) and ultimately leads to a ca. 50% singlet oxygen generation (ΦΔ = 0.49 ± 0.02)-one of the highest singlet oxygen yields reported to date for a photoexcited thiobase. In addition, the long-lived triplet state of 2,4-dithiouracil reacts efficiently with the nucleic acid base adenine 5'-monophosphate through a direct, oxygen-independent photocycloaddition mechanism and at a rate that is at least 3-fold faster than that of 4-thiouracil under equal conditions. The new physico-chemical insights reported for these RNA-thiobase derivatives are compared to those of the DNA and RNA bases and the DNA-thiobase derivatives. Furthermore, the strong near-visible absorption and increased photoreactivity measured for 2,4-dithiouracil lays a solid foundation for developing RNA-targeted photocrosslinking and phototherapeutic agents that are more effective than those currently available.

Synthesis and properties of an aggregating heterocyclic helicene.

Heterohelicene 10 is synthesized in six steps from 3,3'-bithienyl. Because the number of steps is small, because the yield is 95% in the last (the reaction of a bis-enol ether with 1,4-benzoquinone-a six-step one pot procedure that constructs the helicene skeleton), and because chromatography is not required to purify any of the products in the synthesis, significant amounts are easily prepared. To convert 10 into enantiopure 3, a helicenebisquinone surrounded by four dodecyloxy groups, requires only a precedented three-step sequence. Enantiopure helicene 3, either without solvent or in dodecane (but not in chloroform) aggregates into columnar structures whose optical properties differ markedly from those of the monomer but resemble those shown previously only by aggregates of 1. Evidence of aggregation in the pure material includes optical microscopic observation of long fibrous structures and X-ray diffraction and combined transmission electron microscopic and electron diffraction analyses showing the molecules within the fibers to be organized in columnar arrays. The circular dichroism spectra, specific rotations, and fluorescent emission spectra of the aggregated structures are all distinctive, and, as reported elsewhere, the second harmonic response is very large. The linear polarizations of the monomers' and aggregates' fluorescent emissions differ greatly. The circular polarization of the aggregates' fluorescent emission, after excitation by unpolarized light, is large.

An EPR investigation of persistent radicals from the photolysis of p, p'-dialkyl-substituted phenyl benzyl ketones adsorbed on MFI zeolites

The photolysis of isomeric pairs of p,p'-dialkyl-substituted phenyl benzyl ketones adsorbed on MFI zeolites has been investigated by EPR spectroscopy. Photolysis produces persistent "benzoyl type" and "benzyl type" radicals. The dominant persistent radical produced by photolysis of any particular isomeric pair depends on the length and position of the p-alkyl chain. The results are attributed to supramolecular stereoisomers resulting from preferential adsorption of the longer alkyl chain into the pores of the zeolite.

Photochemical protease: site-specific photocleavage of hen egg lysozyme and bovine serum albumin.

Site-specific photocleavage of hen egg lysozyme and bovine serum albumin (BSA) by N-(l-phenylalanine)-4-(1-pyrene)butyramide (Py-Phe) is reported. Py-Phe binds to lysozyme and BSA with binding constants 2.2 +/- 0.3 x 10(5) M-1 and 6.5 +/- 0.4 x 10(7) M-1, respectively. Photocleavage of lysozyme and BSA was achieved with high specificity when a mixture of protein, Py-Phe, and an electron acceptor, cobalt(III) hexammine (CoHA), was irradiated at 344 nm. Quantum yields of photocleavage of lysozyme and BSA were 0.26 and 0.0021, respectively. No protein cleavage was observed in the absence of Py-Phe, CoHA, or light. N-terminal sequencing of the protein fragments indicated a single cleavage site of lysozyme between Trp-108 and Val-109, whereas the cleavage of BSA was found to be between Leu-346 and Arg-347. Laser flash photolysis studies of a mixture of protein, Py-Phe, and CoHA showed a strong transient with absorption centered at approximately 460 nm, corresponding to pyrene cation radical. Quenching of the singlet excited state of Py-Phe by CoHA followed by the reaction of the resulting pyrenyl cation radical with the protein backbone may be responsible for the protein cleavage. The high specificity of photocleavage may be valuable in targeting specific sites of proteins with small molecules.

Photo-induced inactivation of viruses: adsorption of methylene blue, thionine, and thiopyronine on Qbeta bacteriophage.

The adsorption of cationic organic dyes (methylene blue, thionine, and thiopyronine) on Qbeta bacteriophage was studied by UV-visible and fluorescence spectroscopy. The dyes have shown a strong affinity to the virus and some have been used as sensitizers for photo-induced inactivation of virus. In the methylene blue concentration range of 0.1-5 microM and at high ratios of dye to virus (greater than 1000 dye molecules per virion), the dyes bind as aggregates on the virus. Aggregation lowers the efficiency of photoinactivation because of self-quenching of the dye. At lower ratios of dye to virus (lower than 500 dye molecules per virion), the dye binds to the virus as a monomer. Fluorescence polarization and time-resolved studies of the fluorescence support the conclusions based on fluorescence quenching. Increasing the ionic strength (adding NaCl) dissociates bound dye aggregates on the virus and releases monomeric dye into the bulk solution.