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1.
Mem Cognit ; 50(4): 817-836, 2022 05.
Article in English | MEDLINE | ID: mdl-34623605

ABSTRACT

Making property inferences for category instances is important and has been studied in two largely separate areas-categorical induction and perceptual categorization. Categorical induction has a corpus of well-established effects using complex, real-world categories; however, the representational basis of these effects is unclear. In contrast, the perceptual categorization paradigm has fostered the assessment of well-specified representation models due to its controlled stimuli and categories. In categorical induction, evaluations of premise typicality effects, stronger attribute generalization from typical category instances than from atypical, have tried to control the similarity between instances to be distinct from premise-conclusion similarity effects, stronger generalization from greater similarity. However, the extent to which similarity has been controlled is unclear for these complex stimuli. Our research embedded analogues of categorical induction effects in perceptual categories, notably premise typicality and premise conclusion similarity, in an attempt to clarify the category representation underlying feature inference. These experiments controlled similarity between instances using overlap of a small number of constrained features. Participants made inferences for test cases using displayed sets of category instances. The results showed typicality effects, premise-conclusion similarity effects, but no evidence of premise typicality effects (i.e., no preference for generalizing features from typical over atypical category instances when similarity was controlled for), with significant Bayesian support for the null. As typicality effects occurred and occur widely in the perceptual categorization paradigm, why was premise typicality absent? We discuss possible reasons. For attribute inference, is premise typicality distinct from instance similarity? These initial results suggest not.


Subject(s)
Concept Formation , Generalization, Psychological , Bayes Theorem , Humans
2.
Cogn Psychol ; 120: 101290, 2020 08.
Article in English | MEDLINE | ID: mdl-32200045

ABSTRACT

Given the important conceptual connections between cause and coincidence as well as the extensive prior research on causality asking, "how causal is this?", the present research proposes and evaluated a psychological construction of coincidentality as the answer to the question, "how coincidental is this?" Four experiments measured the judgment properties of a reasonably large set of real coincidences from an initial diary study. These judgements included coincidentality and an array of other judgments about event uncertainty, hypothesis belief and surprise as predictors of coincidentality consistent with and supporting our prior definition of coincidence (Johansen & Osman, 2015): "coincidences are surprising pattern repetitions that are observed to be unlikely by chance but are nonetheless ascribed to chance since the search for causal mechanisms has not produced anything more plausible than mere chance." In particular, we evaluated formal models based on judgements of uncertainty, belief and surprise as predictors to develop a model of coincidentality. Ultimately, we argue that coincidentality is a marker for causal suspicion/discovery in terms of a flag that a new, unknown causal mechanism may be operating.


Subject(s)
Causality , Decision Making/physiology , Judgment , Uncertainty , Bayes Theorem , Humans
3.
Mem Cognit ; 48(5): 710-730, 2020 07.
Article in English | MEDLINE | ID: mdl-32078736

ABSTRACT

Categories have at least two main functions: classification of instances and feature inference. Classification involves assigning an instance to a category, and feature inference involves predicting a feature for a category instance. Correspondingly, categories can be learned in two distinct ways, by classification and feature inference. A typical difference between these in the perceptual category learning paradigm is the presence of the category label as part of the stimulus in feature inference learning and not in classification learning. So we hypothesized a label-induced rule-bias in feature inference learning compared to classification and evaluated it on an important starting point in the field for category learning - the category structures from Shepard, Hovland, and Jenkins (Psychological Monographs: General and Applied, 75(13), 1-42, 1961). They classically found that classification learning of structures consistent with more complex rules resulted in poorer learning. We compared feature inference learning of these structures with classification learning and found differences between the learning tasks supporting the label-bias hypothesis in terms of an emphasis on label-based rules in feature inference. Importantly, participants' self-reported rules were largely consistent with their task performance and indicated the preponderance of rule representation in both tasks. So, while the results do not support a difference in the kind of representation for the two learning tasks, the presence of category labels in feature inference tended to focus rule formation. The results also highlight the specialized nature of the classic Shepard et al. (1961) stimuli in terms of being especially conducive to the formation of compact verbal rules.


Subject(s)
Learning , Concept Formation , Humans
4.
Mem Cognit ; 48(2): 200-211, 2020 02.
Article in English | MEDLINE | ID: mdl-32034691

ABSTRACT

Studies of human causal learning typically conceptualize an effect as the presence or absence of an outcome or event in a given trial following a cause. However, causes may exert their influence in other ways, notably, by advancing or postponing the time at which an outcome occurs. Prior research has not examined how humans evaluate causal changes where the change in timing itself is the effect of interest. This research took a first step in this direction by investigating whether participants can accurately judge cause-effect contingencies when the effect is a change in outcome timing, as distinct from outcome occurrence: A change to the when of the outcome rather than to the whether. Three experiments presented scenarios where a candidate cause could either advance or postpone an inevitable outcome by a given amount of time and with a given probability. Consistent with previous research on judgments about event occurrence, participants gave higher ratings to scenarios with greater contingency. These effects were generally consistent for actions that advanced or postponed the outcome. Overall, our findings demonstrate that people are sensitive to probabilistic contrasts involving causal changes in event timing.


Subject(s)
Learning/physiology , Probability , Thinking/physiology , Time Perception/physiology , Adult , Female , Humans , Male , Young Adult
5.
Dev Sci ; 21(3): e12576, 2018 05.
Article in English | MEDLINE | ID: mdl-28736940

ABSTRACT

Concerns about the relationship between computer games and children's aggression have been expressed for decades, but it is not yet clear whether the content of such games evokes aggression or a prior history of aggression promotes children's interest in aggressive games. Two hundred and sixty-six 7-year-old children from a nationally representative longitudinal sample in the UK played a novel computer game (CAMGAME) in which the child's avatar encountered a series of social challenges that might evoke aggressive, prosocial or neutral behaviour. Aggressive choices during the game were predicted by well-known risk factors for aggressive conduct problems and the children's own early angry aggressiveness as infants. These findings suggest that children who are predisposed to aggression bring those tendencies to virtual as well as real environments.


Subject(s)
Aggression/psychology , Child Behavior/psychology , Video Games/psychology , Child , Child, Preschool , Female , Humans , Infant , Male , Risk Factors , United Kingdom
6.
Cogn Sci ; 39(7): 1594-621, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25430964

ABSTRACT

Two main uses of categories are classification and feature inference, and category labels have been widely shown to play a dominant role in feature inference. However, the nature of this influence remains unclear, and we evaluate two contrasting hypotheses formalized as mathematical models: the label special-mechanism hypothesis and the label super-salience hypothesis. The special-mechanism hypothesis is that category labels, unlike other features, trigger inference decision making in reference to the category prototypes. This results in a tendency for prototype-compatible inferences because the labels trigger a special mechanism rather than because of any influences they have on similarity evaluation. The super-salience hypothesis assumes that the large label influence is due to their high salience and corresponding impact on similarity without any need for a special mechanism. Application of the two models to a feature inference task based on a family resemblance category structure yields strong support for the label super-salience hypothesis and in particular does not support the need for a special mechanism based on prototypes.


Subject(s)
Attention , Classification , Concept Formation , Decision Making , Humans
7.
Mem Cognit ; 41(6): 904-16, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23580340

ABSTRACT

Many studies have demonstrated that reinforcement delays exert a detrimental influence on human judgments of causality. In a free-operant procedure, the trial structure is usually only implicit, and delays are typically manipulated via trial duration, with longer trials tending to produce both longer experienced delays and also lower objective contingencies. If, however, a learner can become aware of this trial structure, this may mitigate the effects of delay on causal judgments. Here we tested this "structural-awareness" hypothesis by manipulating whether response-outcome contingencies were clearly identifiable as such, providing structural information in real time using an auditory tone to delineate consecutive trials. A first experiment demonstrated that providing cues to indicate trial structure, but without an explicit indication of their meaning, significantly increased the accuracy of causal judgments in the presence of delays. This effect was not mediated by changes in response frequency or timing, and a second experiment demonstrated that it cannot be attributed to the alternative explanation of enhanced outcome salience. In a third experiment, making trial structure explicit and unambiguous, by telling participants that the tones indicated trial structure, completely abolished the effect of delays. We concluded that, with sufficient information, a continuous stream of causes and effects can be perceived as a series of discrete trials, the contingency nature of the input may be exploited, and the effects of delay may be eliminated. These results have important implications for human contingency learning and in the characterization of temporal influences on causal inference.


Subject(s)
Learning/physiology , Thinking/physiology , Adult , Association Learning/physiology , Awareness/physiology , Conditioning, Operant/physiology , Humans , Judgment/physiology , Reinforcement, Psychology , Time Factors , Young Adult
8.
Q J Exp Psychol (Hove) ; 66(6): 1204-26, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23140443

ABSTRACT

A class of dual-system theories of categorization assumes a categorization system based on actively formed prototypes in addition to a separate instance memory system. It has been suggested that, because they have used poorly differentiated category structures (such as the influential "5-4" structure), studies supporting the alternative exemplar theory reveal little about the properties of the categorization system. Dual-system theories assume that the instance memory system only influences categorization behaviour via similarity to single isolated instances, without generalization across instances. However, we present the results of two experiments employing the 5-4 structure to argue against this. Experiment 1 contrasted learning in the standard 5-4 structure with learning in an even more poorly differentiated 5-4 structure. In Experiment 2, participants memorized the 5-4 structure based on a five minute simultaneous presentation of all nine category instances. Both experiments revealed category influences as reflected by differences in instance learnability and generalization, at variance with the dual-system prediction. These results have implications for the exemplars versus prototypes debate and the nature of human categorization mechanisms.


Subject(s)
Association Learning/physiology , Generalization, Psychological/physiology , Memory, Short-Term/physiology , Confidence Intervals , Feedback , Female , Humans , Male , Models, Psychological , Photic Stimulation , Predictive Value of Tests , Students , Universities
10.
Mol Pharmacol ; 81(3): 411-9, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22155782

ABSTRACT

Environmental particulate matter (PM) pollutants adversely affect human health, but the molecular basis is poorly understood. The ion channel transient receptor potential vanilloid-1 (TRPV1) has been implicated as a sensor for environmental PM and a mediator of adverse events in the respiratory tract. The objectives of this study were to determine whether TRPV1 can distinguish chemically and physically unique PM that represents important sources of air pollution; to elucidate the molecular basis of TRPV1 activation by PM; and to ascertain the contributions of TRPV1 to human lung cell and mouse lung tissue responses exposed to an insoluble PM agonist, coal fly ash (CFA1). The major findings of this study are that TRPV1 is activated by some, but not all of the prototype PM materials evaluated, with rank-ordered responses of CFA1 > diesel exhaust PM > crystalline silica; TRP melastatin-8 is also robustly activated by CFA1, whereas other TRP channels expressed by airway sensory neurons and lung epithelial cells that may also be activated by CFA1, including TRPs ankyrin 1 (A1), canonical 4α (C4α), M2, V2, V3, and V4, were either slightly (TRPA1) or not activated by CFA1; activation of TRPV1 by CFA1 occurs via cell surface interactions between the solid components of CFA1 and specific amino acid residues of TRPV1 that are localized in the putative pore-loop region; and activation of TRPV1 by CFA1 is not exclusive in mouse lungs but represents a pathway by which CFA1 affects the expression of selected genes in lung epithelial cells and airway tissue.


Subject(s)
Coal Ash/toxicity , Lung/drug effects , TRPV Cation Channels/physiology , Base Sequence , Cell Line, Transformed , DNA Primers , Gene Expression Profiling , Humans , Lung/metabolism , Polymerase Chain Reaction
12.
J Spinal Cord Med ; 34(6): 547-54, 2011 Nov.
Article in English | MEDLINE | ID: mdl-22330109

ABSTRACT

The latest revision of the International Standards for the Neurological Classification of Spinal Cord Injury (ISNCSCI) was available in booklet format in June 2011, and is published in this issue of the Journal of Spinal Cord Medicine. The ISNCSCI were initially developed in 1982 to provide guidelines for the consistent classification of the neurological level and extent of the injury to achieve reliable data for clinical care and research studies. This revision was generated from the Standards Committee of the American Spinal Injury Association in collaboration with the International Spinal Cord Society's Education Committee. This article details and explains the updates and serves as a reference for these revisions and clarifications.


Subject(s)
International Classification of Diseases , Neurologic Examination , Spinal Cord Injuries/classification , Disability Evaluation , Humans , Spinal Cord/pathology , Spinal Cord Injuries/diagnosis
13.
Cyberpsychol Behav Soc Netw ; 13(6): 711-4, 2010 Dec.
Article in English | MEDLINE | ID: mdl-21142998

ABSTRACT

The purpose of this research was to illustrate the broad usefulness of simple video-game-based virtual environments (VEs) for psychological research on real-world behavior. To this end, this research explored several high-level social phenomena in a simple, inexpensive computer-game environment: the reduced likelihood of helping under time pressure and the bystander effect, which is reduced helping in the presence of bystanders. In the first experiment, participants had to find the exit in a virtual labyrinth under either high or low time pressure. They encountered rooms with and without virtual bystanders, and in each room, a virtual person requested assistance. Participants helped significantly less frequently under time pressure but the presence/absence of a small number of bystanders did not significantly moderate helping. The second experiment increased the number of virtual bystanders, and participants were instructed to imagine that these were real people. Participants helped significantly less in rooms with large numbers of bystanders compared to rooms with no bystanders, thus demonstrating a bystander effect. These results indicate that even sophisticated high-level social behaviors can be observed and experimentally manipulated in simple VEs, thus implying the broad usefulness of this paradigm in psychological research as a good compromise between experimental control and ecological validity.


Subject(s)
Behavior , Environment , User-Computer Interface , Video Games , Analysis of Variance , Computer Simulation , Female , Humans , Male , Orientation , Young Adult
14.
Psychon Bull Rev ; 17(5): 637-43, 2010 Oct.
Article in English | MEDLINE | ID: mdl-21037160

ABSTRACT

Selective attention plays a central role in theories of category learning and representation. In exemplar theory, selective attention has typically been formalized as operating uniformly across entire stimulus dimensions. Selective featural attention operating within dimensions has been recognized as a conceptual possibility, but relatively little research has focused on evaluating it. In the present research, we explored the usefulness of selective featural attention in the context of exemplar representation. We report the results of embedding the feature-to-category relations typically associated with the inverse base-rate effect--a classic and paradoxical category-learning result--within a perceptual category-learning task using a category structure with three multivalued feature dimensions. An exemplar model incorporating featural selective attention accurately accounted for the inverse base-rate effect that occurred but failed to do so with only dimensional attention.


Subject(s)
Attention , Attention/physiology , Cognition , Humans , Learning , Models, Psychological , Photic Stimulation , Visual Perception
15.
Mem Cognit ; 35(6): 1365-79, 2007 Sep.
Article in English | MEDLINE | ID: mdl-18035634

ABSTRACT

The inverse base rate effect (IBRE) continues to be a puzzling case of decision making on the basis of conflicting information in human category learning. After being trained via feedback over trials to assign combinations of cues to high- and low-frequency categories, participants tend to respond with the low-frequency category to an otherwise perfectly conflicting pair of test cues, contrary to the category base rates. Our Experiment 1 demonstrated that decision making on the basis of an explicit summary of the cue-outcome and outcome base rate information from the standard learning task does not result in the effect. The remaining experimental conditions evaluated the necessary and sufficient conditions for the effect by systematically exploring experimental deviations between the standard learning task and the pure decision-making task. In partial disagreement with both recent theoretical accounts of the effect, these experiments indicate that asymmetric outcome representation and profound base rate neglect are individually necessary and jointly sufficient conditions. Broader theoretical implications are discussed.


Subject(s)
Decision Making , Learning , Psychology/methods , Cues , Humans
16.
J Pharmacol Exp Ther ; 321(3): 830-8, 2007 Jun.
Article in English | MEDLINE | ID: mdl-17332266

ABSTRACT

Transient receptor potential vanilloid 1 (TRPV1) is a calcium-selective ion channel expressed in human lung cells. We show that activation of the intracellular subpopulation of TRPV1 causes endoplasmic reticulum (ER) stress and cell death in human bronchial epithelial and alveolar cells. TRPV1 agonist (nonivamide) treatment caused calcium release from the ER and altered the transcription of growth arrest- and DNA damage-inducible transcript 3 (GADD153), GADD45alpha, GRP78/BiP, ATF3, CCND1, and CCNG2) in a manner comparable with prototypical ER stress-inducing agents. The TRPV1 antagonist N-(4-tert-butylbenzyl)-N'-(1-[3-fluoro-4-(methylsulfonylamino)-phenyl]ethyl)thiourea (LJO-328) inhibited mRNA responses and cytotoxicity. EGTA and ruthenium red inhibited cell surface TRPV1 activity, but they did not prevent ER stress gene responses or cytotoxicity. Cytotoxicity paralleled eukaryotic translation initiation factor 2, subunit 1 (EIF2alpha) phosphorylation and the induction of GADD153 mRNA and protein. Transient overexpression of GADD153 caused cell death independent of agonist treatment, and cells selected for stable overexpression of a GADD153 dominant-negative mutant exhibited reduced sensitivity. Salubrinal, an inhibitor of ER stress-induced cytotoxicity via the EIF2alphaK3/EIF2alpha pathway, or stable overexpression of the EIF2alpha-S52A dominant-negative mutant also inhibited cell death. Treatment of the TRPV1-null human embryonic kidney 293 cell line with TRPV1 agonists did not initiate ER stress responses. Likewise, n-benzylnonanamide, an inactive analog of nonivamide, failed to cause ER calcium release, an increase in GADD153 expression, and cytotoxicity. We conclude that activation of ER-bound TRPV1 and stimulation of GADD153 expression via the EIF2alphaK3/EIF2alpha pathway represents a common mechanism for cytotoxicity by cell-permeable TRPV1 agonists. These findings are significant within the context of lung inflammatory diseases where elevated concentrations of endogenous TRPV1 agonists are probably produced in sufficient quantities to cause TRPV1 activation and lung cell death.


Subject(s)
Endoplasmic Reticulum/drug effects , Epithelial Cells/drug effects , TRPV Cation Channels/agonists , Activating Transcription Factor 3/genetics , Arachidonic Acids/pharmacology , Calcium/metabolism , Capsaicin/analogs & derivatives , Capsaicin/pharmacology , Cell Line , Cell Line, Tumor , Cell Survival/drug effects , Cells, Cultured , Cinnamates/pharmacology , Cyclin D1/genetics , Cyclin G2 , Cyclins/genetics , Diterpenes/pharmacology , Dithiothreitol/pharmacology , Endocannabinoids , Endoplasmic Reticulum/metabolism , Endoplasmic Reticulum Chaperone BiP , Enzyme Inhibitors/pharmacology , Epithelial Cells/cytology , Epithelial Cells/metabolism , Eukaryotic Initiation Factor-2/genetics , Eukaryotic Initiation Factor-2/metabolism , Gene Expression/drug effects , Humans , Lung/cytology , Lung/metabolism , Phosphorylation/drug effects , Polyunsaturated Alkamides/pharmacology , TRPV Cation Channels/antagonists & inhibitors , TRPV Cation Channels/genetics , Thapsigargin/pharmacology , Thiourea/analogs & derivatives , Thiourea/pharmacology , Transcription Factor CHOP/genetics , Transcription Factor CHOP/metabolism , Transfection
17.
Toxicol Sci ; 89(1): 278-86, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16120755

ABSTRACT

TRPV1 mediates cell death and pro-inflammatory cytokine production in lung epithelial cells exposed to prototypical receptor agonists. This study shows that NHBE, BEAS-2B and TRPV1 over-expressing BEAS-2B cells pre-treated with various TRPV1 antagonists become sensitized to the prototypical TRPV1 agonist, nonivamide, via a mechanism that involves translocation of existing receptor from the endoplasmic reticulum to the plasma membrane. As such, typical cellular responses to agonist treatment, as measured by calcium flux, inflammatory cytokine gene induction, and cytotoxicity were exacerbated. These data were in contrast to the results obtained when TRPV1 antagonists were co-administered with nonivamide; conditions which inhibited TRPV1-mediated effects. The antagonists LJO-328, SC0030, and capsazepine increased the cytotoxicity of nonivamide by approximately 20-fold and agonist-induced calcium flux by approximately 6-fold. Inflammatory-cytokine gene induction by nonivamide was also increased significantly by pre-treatment with the antagonists. The enhanced responses were inhibited by the co-administration of antagonists with nonivamide, confirming that increases in sensitivity were attributable to increased TRPV1-associated activity. Sensitization was attenuated by brefeldin A (a golgi transport inhibitor), but not cycloheximide (a protein synthesis inhibitor), or actinomycin D (a transcription inhibitor). Sensitized cells exhibited increased calcium flux from extracellular calcium sources, while unsensitized cells exhibited calcium flux originating primarily from intracellular stores. These results demonstrate the presence of a novel mechanism for regulating the sub-cellular distribution of TRPV1 and subsequent control of cellular sensitivity to TRPV1 agonists.


Subject(s)
Bronchi/metabolism , Capsaicin/analogs & derivatives , Epithelial Cells/metabolism , TRPV Cation Channels/antagonists & inhibitors , TRPV Cation Channels/metabolism , Benzoates/pharmacology , Brefeldin A/pharmacology , Bronchi/drug effects , Bronchi/pathology , Calcium/metabolism , Capsaicin/toxicity , Cell Survival/drug effects , Cells, Cultured , Drug Administration Schedule , Drug Synergism , Epithelial Cells/drug effects , Epithelial Cells/pathology , Gene Expression/drug effects , Humans , Interleukin-6/genetics , Interleukin-6/metabolism , Interleukin-8/genetics , Interleukin-8/metabolism , Nitric Oxide Synthase/antagonists & inhibitors , Oxazoles/pharmacology , RNA, Messenger/metabolism , Receptors, Cell Surface , Reverse Transcriptase Polymerase Chain Reaction , TRPV Cation Channels/agonists
18.
J Biochem Mol Toxicol ; 19(4): 266-75, 2005.
Article in English | MEDLINE | ID: mdl-16173059

ABSTRACT

Activation of the capsaicin receptor (VR1 or TRPV1) in bronchial epithelial cells by capsaicinoids and other vanilloids promotes pro-inflammatory cytokine production and cell death. The purpose of this study was to investigate the role of TRPV1-mediated calcium flux from extracellular sources as an initiator of these responses and to define additional cellular pathways that control cell death. TRPV1 antagonists and reduction of calcium concentrations in treatment solutions attenuated calcium flux, induction of interleukin-6 and 8 gene expression, and IL-6 secretion by cells treated with capsaicin or resiniferatoxin. Most TRPV1 antagonists also attenuated cell death, but the relative potency and extent of protection did not directly correlate with inhibition of total calcium flux. Treatment solutions with reduced calcium content or chelators had no effect on cytotoxicity. Inhibitors of arachidonic acid metabolism and cyclo-oxygenases also prevented cell death indicating that TRPV1 agonists disrupted basal arachidonic acid metabolism and altered cyclo-oxygenase function via a TRPV1-dependent mechanism in order to produce toxicity. These data confirm previous results demonstrating calcium flux through TRPV1 acts as a trigger for cytokine production by vanilloids, and provides new mechanistic insights on mechanisms of cell death produced by TRPV1 agonists in respiratory epithelial cells.


Subject(s)
Bronchi/metabolism , Capsaicin/pharmacology , Epithelial Cells/metabolism , Interleukin-6/biosynthesis , Interleukin-8/biosynthesis , Ion Channels/agonists , Arachidonic Acid/metabolism , Biological Transport/drug effects , Bronchi/cytology , Calcium/metabolism , Cell Death/drug effects , Cell Line , Epithelial Cells/cytology , Humans , Ion Channels/antagonists & inhibitors , Ion Channels/metabolism , Prostaglandin-Endoperoxide Synthases/metabolism , TRPV Cation Channels
19.
Biochemistry ; 44(15): 5660-71, 2005 Apr 19.
Article in English | MEDLINE | ID: mdl-15823024

ABSTRACT

The formation of covalent cross-links between amino acid side chains and DNA bases in DNA-protein complexes is a significant pathway in oxidative damage to the genome, yet much remains to be learned about their chemical structures and mechanisms of formation. In the present study, DNA-protein cross-links (DPCs) were formed between synthetic oligodeoxynucleotides containing an 8-oxo-7,8-dihydro-2'deoxyguanosine (OG) or an 8-oxo-7,8-dihydro-2'-deoxyadenosine (OA) nucleotide and Escherichia coli singled-stranded binding protein (SSB) under oxidative conditions. Studies with various sequences indicated that DNA homopolymers and those lacking 8-oxopurines were less reactive toward DPC formation. DPCs were formed in the presence of HOCl, peroxynitrite, and the one-electron oxidants Na(2)IrCl(6), Na(2)IrBr(6), and Na(3)Fe(CN)(6). Protein-protein cross-linking was also observed, particularly for oxidants of high reduction potential such as Na(2)IrCl(6). The adducted oligodeoxynucleotides were sensitive to hot piperidine treatment leading to strand scission at the site of cross-linking. In addition, the covalent cross-links were somewhat heat and acid labile, which may be related to the difficulties encountered in obtaining complete characterization of trypsin digests of the DPCs. However, model reactions involving the single amino acids lysine, arginine, and tyrosine, residues known to be involved in base contacts in the DNA:SSB complex, could be studied, and the adduct formed between N(alpha)-acetyllysine methyl ester and an 18-mer containing OG was tentatively characterized by electrospray ionization mass spectrometry as analogues of spiroiminodihydantoin and guanidinohydantoin. A mechanism involving nucleophilic attack of an amino acid side chain (e.g. the epsilon-amino group of lysine) at C5 of a 2-electron oxidized form of OG is proposed.


Subject(s)
DNA, Single-Stranded/chemistry , DNA, Single-Stranded/metabolism , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/metabolism , Deoxyguanosine/analogs & derivatives , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/metabolism , Oligodeoxyribonucleotides/chemistry , Oligodeoxyribonucleotides/metabolism , 8-Hydroxy-2'-Deoxyguanosine , Amino Acids/chemistry , Base Sequence , Binding Sites , Cross-Linking Reagents , DNA Adducts/chemistry , DNA Adducts/metabolism , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , DNA, Single-Stranded/genetics , Deoxyguanosine/chemistry , Escherichia coli/genetics , Escherichia coli/metabolism , Hot Temperature , Hydrogen-Ion Concentration , Macromolecular Substances , Models, Molecular , Nucleic Acid Conformation , Oligodeoxyribonucleotides/genetics , Oxidation-Reduction , Piperidines/pharmacology , Protein Conformation , Spectrometry, Mass, Electrospray Ionization
20.
J Exp Psychol Learn Mem Cogn ; 31(6): 1433-58, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16393056

ABSTRACT

This research's purpose was to contrast the representations resulting from learning of the same categories by either classifying instances or inferring instance features. Prior inference learning research, particularly T. Yamauchi and A. B. Markman (1998), has suggested that feature inference learning fosters prototype representation, whereas classification learning encourages exemplar representation. Experiment 1 supported this hypothesis. Averaged and individual participant data from transfer after inference training were better fit by a prototype than by an exemplar model. However, Experiment 2, with contrasting inference learning conditions, indicated that the prototype model was mimicking a set of label-based bidirectional rules, as determined by the inference learning task demands in Experiment 1. Only the set of rules model accounted for all the inference learning conditions in these experiments.


Subject(s)
Learning , Models, Psychological , Practice, Psychological , Psychology/methods , Humans
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