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1.
Biochim Biophys Acta ; 1824(12): 1409-15, 2012 Dec.
Article in English | MEDLINE | ID: mdl-22750405

ABSTRACT

A monomeric four-α-helix bundle protein Aα4 was designed as a step towards investigating the interaction of volatile general anesthetics with their putative membrane protein targets. The alpha helices, connected by glycine loops, have the sequence A, B, B', A'. The DNA sequence was designed to make the helices with the same amino acid sequences (helix A and A', B and B', respectively) as different as possible, while using codons which are favorable for expression in E. coli. The protein was bacterially expressed and purified to homogeneity using reversed-phase HPLC. Protein identity was verified using MALDI-TOF mass spectrometry. Far-UV circular dichroism spectroscopy confirmed the predominantly alpha-helical nature of the protein Aα4. Guanidinium chloride induced denaturation showed that the monomeric four-α-helix bundle protein Aα4 is considerably more stable compared to the dimeric di-α-helical protein (Aα2-L38M)2. The sigmoidal character of the unfolding reaction is conserved while the sharpness of the transition is increased 1.8-fold. The monomeric four-α-helix bundle protein Aα4 bound halothane with a dissociation constant (K(d)) of 0.93 ± 0.02mM, as shown by both tryptophan fluorescence quenching and isothermal titration calorimetry. This monomeric four-α-helix bundle protein can now be used as a scaffold to incorporate natural central nervous system membrane protein sequences in order to examine general anesthetic interactions with putative targets in detail.


Subject(s)
Anesthetics, Inhalation/metabolism , Halothane/metabolism , Proteins/metabolism , Amino Acid Sequence , Biophysical Phenomena , Chromatography, Gel , Molecular Sequence Data , Protein Binding , Protein Structure, Secondary , Solutions
2.
Biophys J ; 96(10): 4164-75, 2009 May 20.
Article in English | MEDLINE | ID: mdl-19450487

ABSTRACT

We previously reported the synthesis and structural characterization of a model membrane protein comprised of an amphiphilic 4-helix bundle peptide with a hydrophobic domain based on a synthetic ion channel and a hydrophilic domain with designed cavities for binding the general anesthetic halothane. In this work, we synthesized an improved version of this halothane-binding amphiphilic peptide with only a single cavity and an otherwise identical control peptide with no such cavity, and applied x-ray reflectivity to monolayers of these peptides to probe the distribution of halothane along the length of the core of the 4-helix bundle as a function of the concentration of halothane. At the moderate concentrations achieved in this study, approximately three molecules of halothane were found to be localized within a broad symmetric unimodal distribution centered about the designed cavity. At the lowest concentration achieved, of approximately one molecule per bundle, the halothane distribution became narrower and more peaked due to a component of approximately 19A width centered about the designed cavity. At higher concentrations, approximately six to seven molecules were found to be uniformly distributed along the length of the bundle, corresponding to approximately one molecule per heptad. Monolayers of the control peptide showed only the latter behavior, namely a uniform distribution along the length of the bundle irrespective of the halothane concentration over this range. The results provide insight into the nature of such weak binding when the dissociation constant is in the mM regime, relevant for clinical applications of anesthesia. They also demonstrate the suitability of both the model system and the experimental technique for additional work on the mechanism of general anesthesia, some of it presented in the companion parts II and III under this title.


Subject(s)
Anesthetics, General/chemistry , Halothane/chemistry , Ion Channels/chemistry , Amino Acid Sequence , Anesthetics, General/metabolism , Halothane/metabolism , Ion Channels/chemical synthesis , Ion Channels/metabolism , Molecular Sequence Data , Peptides/chemical synthesis , Peptides/chemistry , Peptides/metabolism , Protein Binding , X-Rays
3.
Biophys J ; 96(10): 4176-87, 2009 May 20.
Article in English | MEDLINE | ID: mdl-19450488

ABSTRACT

We demonstrate that cyano-phenylalanine (Phe(CN)) can be utilized to probe the binding of the inhalational anesthetic halothane to an anesthetic-binding, model ion channel protein hbAP-Phe(CN). The Trp to Phe(CN) mutation alters neither the alpha-helical conformation nor the 4-helix bundle structure. The halothane binding properties of this Phe(CN) mutant hbAP-Phe(CN), based on fluorescence quenching, are consistent with those of the prototype, hbAP1. The dependence of fluorescence lifetime as a function of halothane concentration implies that the diffusion of halothane in the nonpolar core of the protein bundle is one-dimensional. As a consequence, at low halothane concentrations, the quenching of the fluorescence is dynamic, whereas at high concentrations the quenching becomes static. The 4-helix bundle structure present in aqueous detergent solution and at the air-water interface, is preserved in multilayer films of hbAP-Phe(CN), enabling vibrational spectroscopy of both the protein and its nitrile label (-CN). The nitrile groups' stretching vibration band shifts to higher frequency in the presence of halothane, and this blue-shift is largely reversible. Due to the complexity of this amphiphilic 4-helix bundle model membrane protein, where four Phe(CN) probes are present adjacent to the designed cavity forming the binding site within each bundle, all contributing to the infrared absorption, molecular dynamics (MD) simulation is required to interpret the infrared results. The MD simulations indicate that the blue-shift of -CN stretching vibration induced by halothane arises from an indirect effect, namely an induced change in the electrostatic protein environment averaged over the four probe oscillators, rather than a direct interaction with the oscillators. hbAP-Phe(CN) therefore provides a successful template for extending these investigations of the interactions of halothane with the model membrane protein via vibrational spectroscopy, using cyano-alanine residues to form the anesthetic binding cavity.


Subject(s)
Alanine/analogs & derivatives , Anesthetics, General/chemistry , Fluorescent Dyes/chemistry , Halothane/chemistry , Ion Channels/chemistry , Nitriles/chemistry , Vibration , Air , Alanine/chemistry , Amino Acid Sequence , Anesthetics, General/metabolism , Buffers , Circular Dichroism , Detergents/chemistry , Halothane/metabolism , Ion Channels/metabolism , Molecular Sequence Data , Peptides/chemical synthesis , Peptides/chemistry , Peptides/metabolism , Protein Binding , Protein Structure, Secondary , Spectrometry, Fluorescence , Spectrophotometry, Infrared , Surface Properties , Water/chemistry , X-Rays
4.
Biophys J ; 94(11): 4464-72, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18310239

ABSTRACT

As a model of the protein targets for volatile anesthetics, the dimeric four-alpha-helix bundle, (Aalpha(2)-L1M/L38M)(2), was designed to contain a long hydrophobic core, enclosed by four amphipathic alpha-helices, for specific anesthetic binding. The structural and dynamical analyses of (Aalpha(2)-L1M/L38M)(2) in the absence of anesthetics (another study) showed a highly dynamic antiparallel dimer with an asymmetric arrangement of the four helices and a lateral accessing pathway from the aqueous phase to the hydrophobic core. In this study, we determined the high-resolution NMR structure of (Aalpha(2)-L1M/L38M)(2) in the presence of halothane, a clinically used volatile anesthetic. The high-solution NMR structure, with a backbone root mean-square deviation of 1.72 A (2JST), and the NMR binding measurements revealed that the primary halothane binding site is located between two side-chains of W15 from each monomer, different from the initially designed anesthetic binding sites. Hydrophobic interactions with residues A44 and L18 also contribute to stabilizing the bound halothane. Whereas halothane produces minor changes in the monomer structure, the quaternary arrangement of the dimer is shifted by about half a helical turn and twists relative to each other, which leads to the closure of the lateral access pathway to the hydrophobic core. Quantitative dynamics analyses, including Modelfree analysis of the relaxation data and the Carr-Purcell-Meiboom-Gill transverse relaxation dispersion measurements, suggest that the most profound anesthetic effect is the suppression of the conformational exchange both near and remote from the binding site. Our results revealed a novel mechanism of an induced fit between anesthetic molecule and its protein target, with the direct consequence of protein dynamics changing on a global rather than a local scale. This mechanism may be universal to anesthetic action on neuronal proteins.


Subject(s)
Anesthetics, Inhalation/chemistry , Drug Design , Halothane/chemistry , Membrane Proteins/chemistry , Membrane Proteins/ultrastructure , Models, Chemical , Models, Molecular , Binding Sites , Computer Simulation , Protein Binding , Protein Conformation
5.
Biophys J ; 94(11): 4454-63, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18310240

ABSTRACT

The four-alpha-helix bundle mimics the transmembrane domain of the Cys-loop receptor family believed to be the protein target for general anesthetics. Using high resolution NMR, we solved the structure (Protein Data Bank ID: 2I7U) of a prototypical dimeric four-alpha-helix bundle, (Aalpha(2)-L1M/L38M)(2,) with designed specific binding pockets for volatile anesthetics. Two monomers of the helix-turn-helix motif form an antiparallel dimer as originally designed, but the high-resolution structure exhibits an asymmetric quaternary arrangement of the four helices. The two helices from the N-terminus to the linker (helices 1 and 1') are associated with each other in the dimer by the side-chain ring stacking of F12 and W15 along the long hydrophobic core and by a nearly perfect stretch of hydrophobic interactions between the complementary pairs of L4, L11, L18, and L25, all of which are located at the heptad e position along the helix-helix dimer interface. In comparison, the axes of the two helices from the linker to the C-terminus (helices 2 and 2') are wider apart from each other, creating a lateral access pathway around K47 from the aqueous phase to the center of the designed hydrophobic core. The site of the L38M mutation, which was previously shown to increase the halothane binding affinity by approximately 3.5-fold, is not part of the hydrophobic core presumably involved in the anesthetic binding but shows an elevated transverse relaxation (R(2)) rate. Qualitative analysis of the protein dynamics by reduced spectral density mapping revealed exchange contributions to the relaxation at many residues in the helices. This observation was confirmed by the quantitative analysis using the Modelfree approach and by the NMR relaxation dispersion measurements. The NMR structures and Autodock analysis suggest that the pocket with the most favorable amphipathic property for anesthetic binding is located between the W15 side chains at the center of the dimeric hydrophobic core, with the possibility of two additional minor binding sites between the F12 and F52 ring stacks of each monomer. The high-resolution structure of the designed anesthetic-binding protein offers unprecedented atomistic details about possible sites for anesthetic-protein interactions that are essential to the understanding of molecular mechanisms of general anesthesia.


Subject(s)
Anesthetics/chemistry , Drug Design , Membrane Proteins/chemistry , Membrane Proteins/ultrastructure , Models, Chemical , Models, Molecular , Binding Sites , Computer Simulation , Protein Binding , Protein Conformation
6.
J Clin Anesth ; 19(3): 218-21, 2007 May.
Article in English | MEDLINE | ID: mdl-17531732

ABSTRACT

This case series details successful management of life-threatening airway obstruction after carotid endarterectomy. In the first case, ventilation was restored with a Laryngeal Mask Airway. In the second case, laryngeal mask airway rescue was unsuccessful, necessitating percutaneous transtracheal jet ventilation and subsequent endotracheal intubation with direct laryngoscopy.


Subject(s)
Airway Obstruction/etiology , Endarterectomy, Carotid/adverse effects , Laryngeal Edema/etiology , Laryngeal Masks , Aged , Airway Obstruction/therapy , Hematoma/etiology , Hematoma/surgery , Humans , Laryngeal Edema/therapy , Male , Middle Aged , Tracheostomy
8.
Anesth Analg ; 102(4): 1207-16, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16551925

ABSTRACT

Broadly speaking, proteomics is concerned with the simultaneous characterization of the features (for example, the concentration or activity) of the many different proteins that are typically found in biological or clinical specimens. The field is being driven forward both by innovative biotechnology companies and by academicians who are introducing the technology required for the parallel identification of individual proteins. The technology currently relies heavily on two-dimensional gel electrophoresis combined with mass spectrometry, but protein microarray chips are rapidly becoming a reality. Protein biomarkers are increasingly being recognized as crucially important for the study of disease processes, both from diagnostic and prognostic points of view. Proteome level studies will therefore be used increasingly both to identify and follow the course of various pathological conditions. In the specialty of anesthesiology, this technology will allow an improved understanding of the mechanisms of action of many of the drugs that are routinely administered in the operating room and also the effects of these therapeutic drugs on protein expression. In addition, proteomic studies will increasingly be used for both diagnostic and prognostic purposes in the intensive care unit and the chronic pain clinic.


Subject(s)
Anesthesiology/trends , Critical Care/trends , Proteomics/trends , Anesthesiology/methods , Critical Care/methods , Humans , Internet/trends , Protein Array Analysis/methods , Protein Array Analysis/trends , Proteomics/methods
9.
Biophys J ; 90(9): 3255-66, 2006 May 01.
Article in English | MEDLINE | ID: mdl-16473900

ABSTRACT

hbAP0 is a model membrane protein designed to possess an anesthetic-binding cavity in its hydrophilic domain and a cation channel in its hydrophobic domain. Grazing incidence x-ray diffraction shows that hbAP0 forms four-helix bundles that are vectorially oriented within Langmuir monolayers at the air-water interface. Single monolayers of hbAP0 on alkylated solid substrates would provide an optimal system for detailed structural and dynamical studies of anesthetic-peptide interaction via x-ray and neutron scattering and polarized spectroscopic techniques. Langmuir-Blodgett and Langmuir-Schaeffer deposition and self-assembly techniques were used to form single monolayer films of the vectorially oriented peptide hbAP0 via both chemisorption and physisorption onto suitably alkylated solid substrates. The films were characterized by ultraviolet absorption, ellipsometry, circular dichroism, and polarized Fourier transform infrared spectroscopy. The alpha-helical secondary structure of the peptide was retained in the films. Under certain conditions, the average orientation of the helical axis was inclined relative to the plane of the substrate, approaching perpendicular in some cases. The halothane-binding affinity of the vectorially oriented hbAP0 peptide in the single monolayers, with the volatile anesthetic introduced into the moist vapor environment of the monolayer, was found to be similar to that for the detergent-solubilized peptide.


Subject(s)
Anesthetics, Inhalation/chemistry , Anesthetics/metabolism , Carrier Proteins/chemistry , Halothane/metabolism , Membrane Proteins/chemistry , Models, Molecular , Adsorption , Amino Acid Sequence , Anesthetics, Inhalation/metabolism , Carrier Proteins/metabolism , Circular Dichroism , Membrane Proteins/metabolism , Molecular Sequence Data , Protein Binding , Spectrophotometry, Infrared
10.
Biochemistry ; 45(5): 1435-41, 2006 Feb 07.
Article in English | MEDLINE | ID: mdl-16445285

ABSTRACT

Inhaled anesthetics are thought to alter the conformational states of Cys-loop ligand-gated ion channels (LGICs) by binding within discrete cavities that are lined by portions of four alpha-helical transmembrane domains. Because Cys-loop LGICs are complex molecules that are notoriously difficult to express and purify, scaled-down models have been used to better understand the basic molecular mechanisms of anesthetic action. In this study, stopped-flow fluorescence spectroscopy was used to define the kinetics with which inhaled anesthetics interact with (Aalpha(2)-L1M/L38M)(2), a four-alpha-helix bundle protein that was designed to model anesthetic binding sites on Cys-loop LGICs. Stopped-flow fluorescence traces obtained upon mixing (Aalpha(2)-L1M/L38M)(2) with halothane revealed immediate, fast, and slow components of quenching. The immediate component, which occurred within the mixing time of the spectrofluorimeter, was attributed to direct quenching of tryptophan fluorescence upon halothane binding to (Aalpha(2)-L1M/L38M)(2). This was followed by a biexponential fluorescence decay containing fast and slow components, reflecting anesthetic-induced conformational transitions. Fluorescence traces obtained in studies using sevoflurane, isoflurane, and desflurane, which poorly quench tryptophan fluorescence, did not contain the immediate component. However, these anesthetics did produce the fast and slow components, indicating that they also alter the conformation of (Aalpha(2)-L1M/L38M)(2). Cyclopropane, an anesthetic that acts with unusually low potency on Cys-loop LGICs, acted with low apparent potency on (Aalpha(2)-L1M/L38M)(2). These results suggest that four-alpha-helix bundle proteins may be useful models of in vivo sites of action that allow the use of a wide range of techniques to better understand how anesthetic binding leads to changes in protein structure and function.


Subject(s)
Anesthetics, Inhalation/chemistry , Halothane/chemistry , Methyl Ethers/chemistry , Proteins/chemistry , Cysteine/chemistry , Ion Channel Gating/physiology , Ion Channels/physiology , Kinetics , Ligands , Models, Chemical , Protein Conformation , Protein Structure, Secondary , Proteins/isolation & purification , Proteins/physiology , Sensitivity and Specificity , Sevoflurane , Spectrometry, Fluorescence/methods
11.
Biochemistry ; 44(36): 12128-35, 2005 Sep 13.
Article in English | MEDLINE | ID: mdl-16142911

ABSTRACT

The mechanisms whereby volatile general anesthetics reversibly alter protein function in the central nervous system remain obscure. Using three different spectroscopic approaches, evidence is presented that binding of the modern general anesthetic sevoflurane to the hydrophobic core of a model four-alpha-helix bundle protein results in structural changes. Aromatic residues in the hydrophobic core reorient into new environments upon anesthetic binding, and the protein as a whole becomes less dynamic and exhibits structural tightening. Comparable structural changes in the predicted in vivo protein targets, such as the gamma-aminobutyric acid type A receptor and the N-methyl-D-aspartate receptor, may underlie some, or all, of the behavioral effects of these widely used clinical agents.


Subject(s)
Methyl Ethers/pharmacology , Receptors, GABA/chemistry , Receptors, GABA/metabolism , Receptors, N-Methyl-D-Aspartate/chemistry , Receptors, N-Methyl-D-Aspartate/metabolism , Circular Dichroism , Magnetic Resonance Spectroscopy , Protein Structure, Secondary/drug effects , Sevoflurane , Spectrometry, Fluorescence
12.
Biomacromolecules ; 6(3): 1516-23, 2005.
Article in English | MEDLINE | ID: mdl-15877373

ABSTRACT

The structural features of volatile anesthetic binding sites on proteins are being investigated with the use of a defined model system consisting of a four-alpha-helix bundle scaffold with a hydrophobic core. The current study describes the bacterial expression, purification, and initial characterization of the four-alpha-helix bundle (Aalpha(2)-L1M/L38M)(2). The alpha-helical content and stability of the expressed protein are comparable to that of the chemically synthesized four-alpha-helix bundle (Aalpha(2)-L38M)(2) reported earlier. The affinity for binding halothane is somewhat improved with a K(d) = 120 +/- 20 microM as determined by W15 fluorescence quenching, attributed to the L1M substitution. Near-UV circular dichroism spectroscopy demonstrated that halothane binding changes the orientation of the aromatic residues in the four-alpha-helix bundle. Nuclear magnetic resonance experiments reveal that halothane binding results in narrowing of the peaks in the amide region of the one-dimensional proton spectrum, indicating that bound anesthetic limits protein dynamics. This expressed protein should prove to be amenable to nuclear magnetic resonance structural studies on the anesthetic complexes, because of its relatively small size (124 residues) and the high affinities for binding volatile anesthetics. Such studies will provide much needed insight into how volatile anesthetics interact with biological macromolecules and will provide guidelines regarding the general architecture of binding sites on central nervous system proteins.


Subject(s)
Anesthetics, Inhalation/metabolism , Halothane/metabolism , Proteins/genetics , Proteins/metabolism , Amino Acid Sequence/genetics , Gene Expression Regulation/physiology , Molecular Sequence Data , Protein Binding/genetics , Protein Binding/physiology , Protein Structure, Secondary/genetics , Protein Structure, Secondary/physiology , Proteins/chemistry
13.
FEBS J ; 272(2): 573-81, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15654894

ABSTRACT

A molecular understanding of volatile anesthetic mechanisms of action will require structural descriptions of anesthetic-protein complexes. Porcine odorant binding protein is a 157 residue member of the lipocalin family that features a large beta-barrel internal cavity (515 +/- 30 angstroms(3)) lined predominantly by aromatic and aliphatic residues. Halothane binding to the beta-barrel cavity was determined using fluorescence quenching of Trp16, and a competitive binding assay with 1-aminoanthracene. In addition, the binding of halothane and isoflurane were characterized thermodynamically using isothermal titration calorimetry. Hydrogen exchange was used to evaluate the effects of bound halothane and isoflurane on global protein dynamics. Halothane bound to the cavity in the beta-barrel of porcine odorant binding protein with dissociation constants of 0.46 +/- 0.10 mM and 0.43 +/- 0.12 mM determined using fluorescence quenching and competitive binding with 1-aminoanthracene, respectively. Isothermal titration calorimetry revealed that halothane and isoflurane bound with K(d) values of 80 +/- 10 microM and 100 +/- 10 microM, respectively. Halothane and isoflurane binding resulted in an overall stabilization of the folded conformation of the protein by -0.9 +/- 0.1 kcal.mol(-1). In addition to indicating specific binding to the native protein conformation, such stabilization may represent a fundamental mechanism whereby anesthetics reversibly alter protein function. Because porcine odorant binding protein has been successfully analyzed by X-ray diffraction to 2.25 angstroms resolution [1], this represents an attractive system for atomic-level structural studies in the presence of bound anesthetic. Such studies will provide much needed insight into how volatile anesthetics interact with biological macromolecules.


Subject(s)
Anesthetics, Inhalation/metabolism , Halothane/metabolism , Isoflurane/metabolism , Receptors, Odorant/chemistry , Animals , Calorimetry , Protein Binding , Protein Folding , Receptors, Odorant/metabolism , Swine , X-Ray Diffraction
14.
Biophys Chem ; 113(2): 169-74, 2005 Feb 01.
Article in English | MEDLINE | ID: mdl-15617824

ABSTRACT

The thermodynamic parameters underlying the binding of six volatile general anesthetics to the hydrophobic core of the four-alpha-helix bundle (Aalpha(2)-L38M)(2) are determined using isothermal titration calorimetry. Chloroform, bromoform, trichloroethylene, benzene, desflurane and fluroxene are shown to bind to the four-alpha-helix bundle with dissociation constants of 880+/-10, 90+/-5, 200+/-10, 900+/-30, 220+/-10 and 790+/-40 microM, respectively. The measured dissociation constants for the binding of the six general anesthetics to the four-alpha-helix bundle (Aalpha(2)-L38M)(2) correlate with their human or animal EC(50) values. The negative enthalpy changes indicate that favorable polar interactions are achieved between bound anesthetic and the adjacent amino acid side chains. Because of its small size and the ability to bind a variety of general anesthetics, the four-alpha-helix bundle (Aalpha(2)-L38M)(2) represents an attractive system for structural studies on anesthetic-protein complexes.


Subject(s)
Anesthetics, General/chemistry , Calorimetry/methods , Isoflurane/analogs & derivatives , Proteins/chemistry , Amino Acids/chemistry , Animals , Benzene/chemistry , Chloroform/chemistry , Desflurane , Ethers/chemistry , Humans , Hydrophobic and Hydrophilic Interactions , Isoflurane/chemistry , Models, Molecular , Protein Binding , Protein Structure, Secondary , Time Factors , Trichloroethylene/chemistry , Trihalomethanes/chemistry
15.
FEBS Lett ; 578(1-2): 140-4, 2004 Dec 03.
Article in English | MEDLINE | ID: mdl-15581631

ABSTRACT

To determine if occupancy of interfacial pockets in oligomeric proteins by volatile anesthetic molecules can allosterically regulate oligomerization equilibria, variants of a three-helix bundle peptide able to form higher oligomers were studied with analytical ultracentrifugation, hydrogen exchange and modeling. Halothane shifted the oligomerization equilibria towards the oligomer only in a mutation predicted to create sufficient volume in the hexameric pocket. Other mutations at this residue, predicted to create a too small or too polar pocket, were unaffected by halothane. Inhaled anesthetic modulation of oligomerization interactions is a novel and potentially generalizable biophysical basis for some anesthetic actions.


Subject(s)
Anesthetics, Inhalation/metabolism , Halothane/metabolism , Peptides/chemistry , Protein Structure, Quaternary , Allosteric Regulation , Amino Acid Sequence , Anesthetics, Inhalation/chemistry , Binding Sites , Halothane/chemistry , Hydrogen/metabolism , Models, Molecular , Molecular Sequence Data , Mutation , Peptides/genetics , Peptides/metabolism , Sequence Alignment , Tritium/metabolism , Ultracentrifugation
16.
Biophys J ; 87(6): 4065-74, 2004 Dec.
Article in English | MEDLINE | ID: mdl-15465862

ABSTRACT

Earlier work demonstrated that a water-soluble four-helix bundle protein designed with a cavity in its nonpolar core is capable of binding the volatile anesthetic halothane with near-physiological affinity (0.7 mM Kd). To create a more relevant, model membrane protein receptor for studying the physicochemical specificity of anesthetic binding, we have synthesized a new protein that builds on the anesthetic-binding, hydrophilic four-helix bundle and incorporates a hydrophobic domain capable of ion-channel activity, resulting in an amphiphilic four-helix bundle that forms stable monolayers at the air/water interface. The affinity of the cavity within the core of the bundle for volatile anesthetic binding is decreased by a factor of 4-3.1 mM Kd as compared to its water-soluble counterpart. Nevertheless, the absence of the cavity within the otherwise identical amphiphilic peptide significantly decreases its affinity for halothane similar to its water-soluble counterpart. Specular x-ray reflectivity shows that the amphiphilic protein orients vectorially in Langmuir monolayers at higher surface pressure with its long axis perpendicular to the interface, and that it possesses a length consistent with its design. This provides a successful starting template for probing the nature of the anesthetic-peptide interaction, as well as a potential model system in structure/function correlation for understanding the anesthetic binding mechanism.


Subject(s)
Drug Design , Halothane/chemistry , Ion Channels/chemistry , Membrane Proteins/chemistry , Amino Acid Sequence , Anesthetics, Inhalation/chemistry , Binding Sites , Molecular Sequence Data , Protein Binding , Protein Conformation , Protein Structure, Secondary , Solubility
17.
Biopolymers ; 75(4): 338-54, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15372486

ABSTRACT

The general anesthetics halothane and chloroform are capable of binding to synthetic water-soluble four-alpha-helix bundles, which model the putative in vivo receptors. In this study, we investigate the binding of these anesthetics to synthetic water-soluble three-alpha-helix bundles. A series of variants containing up to four X-to-Ala and up to four X-to-Met substitutions was made; and the effect of these substitutions on structure, stability and anesthetic binding affinity was examined. Generally, the amount of alpha-helix and the stability of the three-alpha-helix bundles decreased as the number of X-to-Ala substitutions increased. A concomitant red-shift in tryptophan fluorescence lambdamax was seen, suggesting an increased flexibility of the native structure. Up to four X-to-Met substitutions had little effect on the amount of alpha-helix, but an increase in tryptophan lambdamax was seen for the variants with three and four methionine substitutions. The exceptions were a) a variant with a clustering of alanine and methionine residues at one end of the three-alpha-helix bundle, suggesting a gate structure that can admit ligand molecules; and b) a variant with a single Leu35Ala substitution, suggesting that at select positions, the size of the side chain is important for defining anesthetic binding affinity.


Subject(s)
Anesthetics, General/metabolism , Carrier Proteins/chemistry , Carrier Proteins/metabolism , Amino Acid Sequence , Carrier Proteins/chemical synthesis , Chloroform/metabolism , Circular Dichroism , Halothane/metabolism , In Vitro Techniques , Membrane Proteins/chemical synthesis , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Structure, Secondary
18.
Anesthesiology ; 101(3): 703-9, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15329595

ABSTRACT

BACKGROUND: The majority of surgical patients receive inhaled anesthetics, principally small haloalkanes and haloethers. Long-term cognitive problems occur in the elderly subsequent to anesthesia and surgery, and previous surgery might also be a risk factor for neurodegenerative disorders like Alzheimer and Parkinson disease. The authors hypothesize that inhaled anesthetics contribute to these effects through a durable enhancement of peptide oligomerization. METHODS: Light scattering, filtration assays, electron microscopy, fluorescence spectroscopy and size-exclusion chromatography was used to characterize the concentration-dependent effects of halothane, isoflurane, propofol, and ethanol on amyloid beta peptide oligomerization. Pheochromocytoma cells were used to characterize cytotoxicity of amyloid oligomers with and without the above anesthetics. RESULTS: Halothane and isoflurane enhanced amyloid beta oligomerization rates and pheochromocytoma cytotoxicity in vitro through a preference for binding small oligomeric species. Ethanol and propofol inhibited oligomerization at low concentration but enhanced modestly at very high concentration. Neither ethanol nor propofol enhanced amyloid beta toxicity in pheochromocytoma cells. CONCLUSIONS: Inhaled anesthetics enhance oligomerization and cytotoxicity of Alzheimer disease-associated peptides. In addition to the possibility of a general mechanism for anesthetic neurotoxicity, these results call for further evaluation of the interaction between neurodegenerative disorders, dementia, and inhalational anesthesia.


Subject(s)
Amyloid beta-Peptides/metabolism , Amyloid beta-Peptides/toxicity , Anesthetics, Inhalation/pharmacology , Adrenal Gland Neoplasms/metabolism , Adrenal Gland Neoplasms/pathology , Adrenal Gland Neoplasms/ultrastructure , Amyloid beta-Peptides/chemistry , Animals , Central Nervous System Depressants/pharmacology , Chromatography, Gel , Ethanol/pharmacology , Fluorescent Dyes , Halothane/pharmacology , Image Processing, Computer-Assisted , Isoflurane/pharmacology , Kinetics , L-Lactate Dehydrogenase/metabolism , Microscopy, Electron , Oligopeptides/chemistry , Oligopeptides/metabolism , Oligopeptides/toxicity , Pheochromocytoma/metabolism , Pheochromocytoma/pathology , Pheochromocytoma/ultrastructure , Propofol/pharmacology , Rats , Tumor Cells, Cultured
19.
J Biol Chem ; 279(12): 10991-6, 2004 Mar 19.
Article in English | MEDLINE | ID: mdl-14701847

ABSTRACT

Because of their limited size and complexity, de novo designed proteins are particularly useful for the detailed investigation of folding thermodynamics and mechanisms. Here, we describe how subtle changes in the hydrophobic core of a model three-helix bundle protein (GM-0) alter its folding energetics. To explore the folding tolerance of GM-0 toward amino acid sequence variability, two mutant proteins (GM-1 and GM-2) were generated. In the mutants, cavities were created in the hydrophobic core of the protein by either singly (GM-1; L35A variant) or doubly (GM-2; L35A/I39A variant) replacing large hydrophobic side chains by smaller Ala residues. The folding of GM-0 is characterized by two partially folded intermediate states exhibiting characteristics of molten globules, as evidenced by pressure-unfolding and pressure-assisted cold denaturation experiments. In contrast, the folding energetics of both mutants, GM-1 and GM-2, exhibit only one folding intermediate. Our results support the view that simple but biologically important folding motifs such as the three-helix bundle can reveal complex folding plasticity, and they point to the role of hydrophobic packing as a determinant of the overall stability and folding thermodynamic of the helix bundle.


Subject(s)
Protein Folding , Proteins/chemistry , Guanidine/chemistry , Mutagenesis, Site-Directed , Pressure , Protein Denaturation , Proteins/genetics
20.
Biophys J ; 85(5): 3279-85, 2003 Nov.
Article in English | MEDLINE | ID: mdl-14581228

ABSTRACT

A molecular understanding of volatile anesthetic mechanisms of action will require structural descriptions of anesthetic-protein complexes. Previous work has demonstrated that the halogenated alkane volatile anesthetics halothane and chloroform bind to the hydrophobic core of the four-alpha-helix bundle (Aalpha(2)-L38M)(2) (Johansson et al., 2000, 2003). This study shows that the halogenated ether anesthetics isoflurane, sevoflurane, and enflurane are also bound to the hydrophobic core of the four-alpha-helix bundle, using isothermal titration calorimetry. Isoflurane and sevoflurane both bound to the four-alpha-helix bundle with K(d) values of 140 +/- 10 micro M, whereas enflurane bound with a K(d) value of 240 +/- 10 micro M. The DeltaH degrees values associated with isoflurane, sevoflurane, and enflurane binding were -7.7 +/- 0.1 kcal/mol, -8.2 +/- 0.2 kcal/mol, and -7.2 +/- 0.1 kcal/mol, respectively. The DeltaS degrees values accompanying isoflurane, sevoflurane, and enflurane binding were -8.5 cal/mol K, -10.4 cal/mol K, and -8.0 cal/mol K, respectively. The results indicate that the hydrophobic core of (Aalpha(2)-L38M)(2) is able to accommodate three modern ether anesthetics with K(d) values that approximate their clinical EC(50) values. The DeltaH degrees values point to the importance of polar interactions for volatile general anesthetic binding, and suggest that hydrogen bonding to the ether oxygens may be operative.


Subject(s)
Anesthetics, Inhalation/chemistry , Calorimetry/methods , Enflurane/chemistry , Halothane/chemistry , Isoflurane/chemistry , Methyl Ethers/chemistry , Peptides/chemistry , Anesthetics, General/chemistry , Binding Sites , Energy Transfer , Protein Binding , Sevoflurane , Spectrometry, Fluorescence , Structure-Activity Relationship , Temperature , Titrimetry/methods , Volatilization
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