DFT insights into the mechanism of O2 activation catalyzed by a structural and functional model of cysteine dioxygenase with tris(2-pyridyl)methane-based ligand architecture.

Cysteine dioxygenation is an important step in the metabolism of toxic L-cysteine (Cys) in the human body, carried out by cysteine dioxygenase enzyme (CDO). The disruption of this process is found to elicit neurological health issues. This work reports a computational investigation of mechanistic aspects of this reaction, using a recently reported tris(2-pyridyl)methane-based biomimetic model complex of CDO. The computed results indicate that, the initial SO2 bond formation process is the slowest step in the S-dioxygenation process, possessing an activation barrier of 12.7 kcal/mol. The remaining steps were found to be downhill requiring very small activation energies. The transition states were found to undergo spin crossover between triplet and quintet states, while the singlet surface remained unstable throughout the entire reaction. In essence, the mechanistic scheme and multistate reactivity pattern together with the relatively small computed rate-limiting activation barrier as well as the exothermic formation energy demonstrate that the model complex is an efficient biomimetic CDO model. In addition, the study also substantiates the involvement of Fe(IV)oxido intermediates in the mechanism of S-dioxygenation by the chosen model complex. The insights derived from the O2 activation process might pave way for development of more accurate CDO model catalysts that might be capable of even more efficiently mimicking the geometric, spectroscopic and functional features of the CDO enzyme.

DFT Probe into the Mechanism of Formic Acid Dehydrogenation Catalyzed by Cp*Co, Cp*Rh, and Cp*Ir Catalysts with 4,4'-Amino-/Alkylamino-Functionalized 2,2'-Bipyridine Ligands.

The mechanistic landscape of H2 generation from formic acid catalyzed by Cp*M(III) complexes (M = Co or Rh or Ir) with diamino-/dialkylamino-substituted 2,2'-bipyridine ligand architectures have been unveiled computationally. The calculations indicate that the ß-hydride elimination process is the rate-determining step for all the investigated catalysts. The dialkylamino moieties on the 2,2'-bipyridine ligand were found to reduce the activation free energy required for the rate-limiting ß-hydride elimination step and increase the hydridic nature of the Ir-hydride bond, which accounts for the experimentally observed enhanced catalytic activity. Furthermore, the protonation by H3O+ ion was found to be the kinetically most favorable route than the conventional protonation by formic acid. The origin for this preference lies in the increased electrophilicity of the proton from hydronium ion which facilitates easy protonation of the metal-hydride with low activation energy barrier. The Co and Rh analogues of the chosen iridium catalyst were computationally designed and were estimated to possess a rate-determining activation barrier of 16.9 and 14.5 kcal/mol, respectively. This illustrates that these catalysts are potential candidates for FAD. The insights derived in this work might serve as a vital knowledge that could be capitalized upon for designing cost-effective catalyst for FAD in future.

Deciphering the Mechanistic Details of Manganese-Catalyzed Formic Acid Dehydrogenation: Insights from DFT Calculations.

A comprehensive density functional theory investigation has been carried out to unravel the complete mechanistic landscape of aqueous-phase formic acid dehydrogenation (FAD) catalyzed by a pyridyl-imidazoline-based Mn(I) catalyst [Mn(PY-NHIM)(CO)3Br], which was recently reported by Beller and co-workers. The computed free energy profiles show that for the production of a Mn-formate intermediate [Mn(HCO2-)], a stepwise mechanism is both kinetically and thermodynamically favorable compared to the concerted mechanism. This stepwise mechanism involves the dissociation of a Br- ion from a Mn-bromide complex [Mn(Br)] to create a vacant site and coordination of water solvent to this vacant site, followed by the dissociative exchange of the aqua ligand with the formate ion to form Mn(HCO2-). Non-covalent interaction analysis revealed that the steric hindrance at the transition state is the cardinal reason for the preference to a stepwise mechanism. The ß-hydride elimination process was estimated to be the rate-determining step with a barrier of 19.0 kcal/mol. This confirms the experimental observation. The generation of a dihydrogen-bound complex was found to occur through the protonation of Mn-hydride by a hydronium ion instead of formic acid. The mechanistic details and insights presented in this work would promote future catalytic designing and exploration of earth-abundant Mn-based catalytic systems for potential applications toward FAD.

Pathways of the Extremely Reactive Iron(IV)-oxido complexes with Tetradentate Bispidine Ligands.

The nonheme iron(IV)-oxido complex trans-N3-[(L1 )FeIV =O(Cl)]+ , where L1 is a derivative of the tetradentate bispidine 2,4-di(pyridine-2-yl)-3,7-diazabicyclo[3.3.1]nonane-1-one, is known to have an S=1 electronic ground state and to be an extremely reactive oxidant for oxygen atom transfer (OAT) and hydrogen atom abstraction (HAA) processes. Here we show that, in spite of this ferryl oxidant having the "wrong" spin ground state, it is the most reactive nonheme iron model system known so far and of a similar order of reactivity as nonheme iron enzymes (C-H abstraction of cyclohexane, -90 °C (propionitrile), t1/2 =3.5 sec). Discussed are spectroscopic and kinetic data, supported by a DFT-based theoretical analysis, which indicate that substrate oxidation is significantly faster than self-decay processes due to an intramolecular demethylation pathway and formation of an oxido-bridged diiron(III) intermediate. It is also shown that the iron(III)-chlorido-hydroxido/cyclohexyl radical intermediate, resulting from C-H abstraction, selectively produces chlorocyclohexane in a rebound process. However, the life-time of the intermediate is so long that other reaction channels (known as cage escape) become important, and much of the C-H abstraction therefore is unproductive. In bulk reactions at ambient temperature and at longer time scales, there is formation of significant amounts of oxidation product - selectively of chlorocyclohexane - and it is shown that this originates from oxidation of the oxido-bridged diiron(III) resting state.

Substituent Effect on the Photophysics and ESIPT Mechanism of N,N'-Bis(salicylidene)-p-phenylenediamine: A DFT/TD-DFT Analysis.

Excited-state intramolecular proton transfer (ESIPT) and intramolecular charge transfer (ICT) processes are widely exploited in the designing of organic materials for multifarious applications. This work explores the aftereffects of combining both ESIPT and ICT events in a single molecule, namely, N,N'-bis(salicylidene)-p-phenylenediamine (BSP) exploiting DFT and TD-DFT formalisms. The PBE0 functional employed in the present study is found to yield results with better accuracy for excited-state calculations. The results reveal that introduction of electron donor (-NH2) and electron acceptor (-NO2) substituents on BSP produces a strikingly red-shifted emission with respect to the corresponding emission from the unsubstituted analogue in polar solvents. This red-shifted emission originated due to the coupled effect of ESIPT and planar-ICT (PICT) processes from the coplanar geometry adopted by the substituted molecule (s-BSP). Based on the computed potential energy curves, the ground-state intramolecular proton transfer (GSIPT) was found to take place more favorably in s-BSP than in BSP under all solvent conditions. In the case of ESIPT, the barrier and relative energies of the phototautomers of s-BSP were slightly higher than BSP, which shows that simultaneous substitution of -NH2 and -NO2 groups causes slight perturbation to the ESIPT process. Overall, the computed results show that simultaneous substitution of suitable electron donor and acceptor substituents provides profitable changes in the photophysical properties of ESIPT molecules like BSP. These molecular-level insights will pave way for designing better materials for diverse applications.

A Structural and Functional Model for the Tris-Histidine Motif in Cysteine Dioxygenase.

The iron(II) complexes [Fe(L)(MeCN)3 ](SO3 CF3 )2 (L are two derivatives of tris(2-pyridyl)-based ligands) have been synthesized as models for cysteine dioxygenase (CDO). The molecular structure of one of the complexes exhibits octahedral coordination geometry and the Fe-Npy bond lengths [1.953(4)-1.972(4) Å] are similar to those in the Cys-bound FeII -CDO; Fe-NHis : 1.893-2.199 Å. The iron(II) centers of the model complexes exhibit relatively high FeIII/II redox potentials (E1/2 =0.988-1.380 V vs. ferrocene/ferrocenium electrode, Fc/Fc+ ), within the range for O2 activation and typical for the corresponding nonheme iron enzymes. The reaction of in situ generated [Fe(L)(MeCN)(SPh)]+ with excess O2 in acetonitrile (MeCN) yields selectively the doubly oxygenated phenylsulfinic acid product. Isotopic labeling studies using 18 O2 confirm the incorporation of both oxygen atoms of O2 into the product. Kinetic and preliminary DFT studies reveal the involvement of an FeIII peroxido intermediate with a rhombic S= 1 / 2 FeIII center (687-696 nm; g≈2.46-2.48, 2.13-2.15, 1.92-1.94), similar to the spectroscopic signature of the low-spin Cys-bound FeIII CDO (650 nm, g≈2.47, 2.29, 1.90). The proposed FeIII peroxido intermediates have been trapped, and the O-O stretching frequencies are in the expected range (approximately 920 and 820 cm-1 for the alkyl- and hydroperoxido species, respectively). The model complexes have a structure similar to that of the enzyme and structural aspects as well as the reactivity are discussed.