Design of Triazolium-Grafted Peptidomimetic Macrocycles with Facial Amphipathicity to Target Pathogenic Bacteria.

Access to 1,2,3-triazolium-grafted peptoid macrocycles was developed by macrocyclization and multivalent postmodification of linear peptoid oligomers carrying an alternance of benzylic and propargyl groups as side chains. X-ray analysis and NMR studies revealed a conformational preference for constrained hairpin-shaped structures leading to the facial amphipathic character of these macrocycles. A preliminary evaluation showed the antimicrobial activities of these new cationic amphipathic architectures.

Polymeric copper(I)-NHC complexes with bulky bidentate (N

Starting from imidazolium chlorides bearing bulky nitrogen donors, a series of four complexes, mainly [Cu(C^N)Cl]n coordination polymers were obtained directly as luminescent species by simple filtration from the aqueous reaction medium, highlighting a simple, eco-friendly, robust and reproducible synthetic procedure. Additionally, we have shown on the most efficient example that chloride could be exchanged very easily by other halides/pseudohalides (Br-, I-, NCS-, N3-) allowing to slightly modulate the emitted colour while conserving the polymeric structure, except for azide for which a dimer was obtained. The combination of chemical analyses, of photoluminescence studies in the solid state including quantum yield measurement and X-ray diffraction on single crystals and as-synthesized microcrystalline powders highlighted that the polymeric luminescent species was indeed obtained directly by simple filtration and that no major alteration of the structure was observed upon recrystallisation. Samples of all polymeric complexes displayed remarkable stability towards air oxidation remaining unchanged upon storage for several months and partially retaining their photoluminescence properties even after a thermal treatment at 100 °C for 24 h.

Cage-like structures based on constrained cyclic arylopeptoids.

The access to cupola-like or tube-like structures from ortho- and meta-arylopeptoid macrocycles was explored through CuAAC reaction using a partially flexible bis(azide) and CuI-N-heterocyclic carbene as catalyst. NMR studies showed that a bis-triazolium bicylic compound in the ortho-series adopts well-defined structure in polar aprotic and protic solvents. Besides, preliminary study revealed its potential for oxoanion recognition.

Unveiling the conformational landscape of achiral all-cis tert-butyl ß-peptoids.

The synthesis and conformational study of N-substituted ß-alanines with tert-butyl side chains is described. The oligomers prepared by submonomer synthesis and block coupling methods are up to 15 residues long and are characterised by amide bonds in the cis-conformation. A conformational study comprising experimental solution NMR spectroscopy, X-ray crystallography and molecular modeling shows that despite their intrinsic higher conformational flexibility compared to their α-peptoid counterparts, this family of achiral oligomers adopt preferred secondary structures including a helical conformation close to that described with (1-naphthyl)ethyl side chains but also a novel ribbon-like conformation.

First series of N-alkylamino peptoid homooligomers: solution phase synthesis and conformational investigation.

The synthesis and conformational analysis of the first series of peptoid oligomers composed of consecutive N-(alkylamino)glycine units is investigated. We demonstrate that N-(methylamino)glycine homooligomers can be readily synthesized in solution using N-Boc-N-methylhydrazine as a peptoid submonomer and stepwise or segment coupling methodologies. Their structures were analyzed in solution by 1D and 2D NMR, in the solid state by X-ray crystallography (dimer 2), and implicit solvent QM geometry optimizations. N-(Methylamino)peptoids were found to preferentially adopt trans amide bonds with the side chain N-H bonds oriented approximately perpendicular to the amide plane. This orientation is conducive to local backbone stabilization through intra-residue hydrogen bonds but also to intermolecular associations. The high capacity of N-(methylamino)peptoids to establish intermolecular hydrogen bonds was notably deduced from pronounced concentration-dependent N-H chemical shift variation in 1H NMR and the antiparallel arrangement of mirror image molecules held together via two hydrogen bonds in the crystal lattice of dimer 2.

Strengthening Peptoid Helicity through Sequence Site-Specific Positioning of Amide cis-Inducing NtBu Monomers.

The synthesis of biomimetic helical secondary structures is sought after for the construction of innovative nanomaterials and applications in medicinal chemistry such as the development of protein-protein interaction modulators. Peptoids, a sequence-defined family of oligomers, enable a peptidomimetic strategy, especially considering the easily accessible monomer diversity and peptoid helical folding propensity. However, cis-trans isomerization of the backbone tertiary amides may impair the peptoid's adoption of stable secondary structures, notably the all-cis polyproline I-like helical conformation. Here, we show that cis-inducing NtBu achiral monomers strategically positioned within chiral sequences may reinforce the degree of peptoid helicity, although with a reduced content of chiral side chains. The design principles presented here will undoubtedly help achieve more conformationally stable helical peptoids with desired functions.

Exploring the Conformation of Mixed Cis- Trans α,ß-Oligopeptoids: A Joint Experimental and Computational Study.

The synthesis and conformational preferences of a set of new synthetic foldamers that combine both the α,ß-peptoid backbone and side chains that alternately promote cis- and trans-amide bond geometries have been achieved and addressed jointly by experiment and molecular modeling. Four sequence patterns were thus designed and referred to as cis-ß- trans-α, cis-α- trans-ß, trans-ß- cis-α, and trans-α- cis-ß. α- and ß NtBu monomers were used to enforce cis-amide bond geometries and α- and ß NPh monomers to promote trans-amides. NOESY and molecular modeling reveal that the trans-α- cis-ß and cis-ß- trans-α tetramers show a similar pattern of intramolecular weak interactions. The same holds for the cis-α- trans-ß and trans-ß- cis-α tetramers, but the interactions are different in nature than those identified in the trans-α- cis-ß-based oligomers. Interestingly, the trans-α- cis-ß peptoid architecture allows establishment of a larger amount of structure-stabilizing intramolecular interactions.

Topologically Diverse Shapes Accessible by Modular Design of Arylopeptoid Macrocycles.

N-Substituted aromatic cyclooligoamides composed of different combinations of ortho-, meta-, and/or para-arylopeptoid residues carrying methoxyethyl side chains have been efficiently synthesized by macrocyclization of the corresponding linear oligomers. The study of the architectures of these macrocycles in solution and solid state has revealed that tetracyclic arylopeptoids adopt sequence-dependent shapes with different backbone amide conformations and side-chain orientations. Remarkably, despite the absence of intramolecular H-bonding ability, some of these arylopeptoid macrocycles show well-defined architectures in solution.

Homogeneous and Robust Polyproline Type I Helices from Peptoids with Nonaromatic α-Chiral Side Chains.

Peptoids that are oligomers of N-substituted glycines represent a class of peptide mimics with great potential in areas ranging from medicinal chemistry to biomaterial science. Controlling the equilibria between the cis and trans conformations of their backbone amides is the major hurdle to overcome for the construction of discrete folded structures, particularly for the development of all-cis polyproline type I (PPI) helices, as tools for modulating biological functions. The prominent role of backbone to side chain electronic interactions (n → π*) and side chains bulkiness in promoting cis-amides was essentially investigated with peptoid aromatic side chains, among which the chiral 1-naphthylethyl (1npe) group yielded the best results. We have explored for the first time the possibility to achieve similar performances with a sterically hindered α-chiral aliphatic side chain. Herein, we report on the synthesis and detailed conformational analysis of a series of (S)-N-(1-tert-butylethyl)glycine (Ns1tbe) peptoid homo-oligomers. The X-ray crystal structure of an Ns1tbe pentamer revealed an all-cis PPI helix, and the CD curves of the Ns1tbe oligomers also resemble those of PPI peptide helices. Interestingly, the CD data reported here are the first for any conformationally homogeneous helical peptoids containing only α-chiral aliphatic side chains. Finally we also synthesized and analyzed two mixed oligomers composed of NtBu and Ns1tbe monomers. Strikingly, the solid state structure of the mixed oligomer Ac-(tBu)2-(s1tbe)4-(tBu)2-COOtBu, the longest to be solved for any linear peptoid, revealed a PPI helix of great regularity despite the presence of only 50% of chiral side chain in the sequence.

A catalytic intramolecular nitrene insertion into a copper(i)-N-heterocyclic carbene bond yielding fused nitrogen heterocycles.

N-(2-Azidophenyl)azolium salts were easily prepared and reacted with copper(i) under conditions allowing the formation of NHC complexes. Under these conditions, the formation of benzimidazo-fused heterocycles occurred under catalytic, efficient and very mild conditions. This reaction is proposed to proceed via dinitrogen elimination and imido/nitrene-NHC cyclization.

Insight into the Uranyl Oxyfluoride Topologies through the Synthesis, Crystal Structure, and Evidence of a New Oxyfluoride Layer in [(UO2)4F13][Sr3(H2O)8](NO3)·H2O.

A new strontium uranyl oxyfluoride, [(UO2)4F13][Sr3(H2O)8](NO3)·H2O, was synthesized under hydrothermal conditions. The single-crystal X-ray structure was determined. This compound crystallizes in the triclinic space group P1̅ (No. 2), with unit cell parameters a = 10.7925(16) Å, b = 10.9183(16) Å, c = 13.231(2) Å, α = 92.570(8)°, ß = 109.147(8)°, γ = 92.778(8)°, V = 1468.1(4) Å3, and Z = 2. The structure is built from uranyl-containing [Formula: see text] chains of tetrameric units of corner-sharing UO2F5 pentagonal bipyramids. These chains are linked through trimeric strontium units to form strontium-uranyl oxyfluoride layers further assembled by nitrate groups. The interlayer space is occupied by free water molecules. This compound was characterized by spectroscopic methods, especially 19F NMR highlighting the many different fluoride sites. Structural relationships with other uranyl oxyfluorides were investigated through the different F/O ratios, the structural building unit, and the structural arrangement.

Cation templating and electronic structure effects in uranyl cage clusters probed by the isolation of peroxide-bridged uranyl dimers.

The self-assembly of uranyl peroxide polyhedra into a rich family of nanoscale cage clusters is thought to be favored by cation templating effects and the pliability of the intrinsically bent U-O2-U dihedral angle. Herein, the importance of ligand and cationic effects on the U-O2-U dihedral angle were explored by studying a family of peroxide-bridged dimers of uranyl polyhedra. Four chemically distinct peroxide-bridged uranyl dimers were isolated that contain combinations of pyridine-2,6-dicarboxylate, picolinate, acetate, and oxalate as coordinating ligands. These dimers were synthesized with a variety of counterions, resulting in the crystallographic characterization of 15 different uranyl dimer compounds containing 17 symmetrically distinct dimers. Eleven of the dimers have U-O2-U dihedral angles in the expected range from 134.0 to 156.3°; however, six have 180° U-O2-U dihedral angles, the first time this has been observed for peroxide-bridged uranyl dimers. The influence of crystal packing, countercation linkages, and π-π stacking impact the dihedral angle. Density functional theory calculations indicate that the ligand does not alter the electronic structure of these systems and that the U-O2-U bridge is highly pliable. Less than 3 kcal·mol(-1) is required to bend the U-O2-U bridge from its minimum energy configuration to a dihedral angle of 180°. These results suggest that the energetic advantage of bending the U-O2-U dihedral angle of a peroxide-bridged uranyl dimer is at most a modest factor in favor of cage cluster formation. The role of counterions in stabilizing the formation of rings of uranyl ions, and ultimately their assembly into clusters, is at least as important as the energetic advantage of a bent U-O2-U interaction.

(H3O)2NaAl3F12, isostructural with A2NaAl3F12 (A = K(+), Rb(+), Cs(+)) fluorides having HTB-type sheets.

The title compound, (H3O)2NaAl3F12 [dihydronium sodium trialuminum(III) dodecafluoride], was obtained by solvothermal synthesis from the reaction of aluminium hydroxide, sodium hydroxide, 1,2,4-triazole and aqueous HF in ethanol at 463 K for 48 h. The structure consists of AlF6 octahedra organized in [AlF4(-)]n HTB-type sheets (HTB is hexagonal tungsten bronze) separated by H3O(+) and Na(+) cations.

Raman spectroscopic and ESI-MS characterization of uranyl peroxide cage clusters.

Strategies for interpreting mass spectrometric and Raman spectroscopic data have been developed to study the structure and reactivity of uranyl peroxide cage clusters in aqueous solution. We demonstrate the efficacy of these methods using the three best-characterized uranyl peroxide clusters, {U24}, {U28}, and {U60}. Specifically, we show a correlation between uranyl-peroxo-uranyl dihedral bond angles and the position of the Raman band of the symmetric stretching mode of the peroxo ligand, develop methods for the assignment of the ESI mass spectra of uranyl peroxide cage clusters, and show that these methods are generally applicable for detecting these clusters in the solid state and solution and for extracting information about their bonding and composition without crystallization.

New series of hybrid fluoroferrates synthesized with triazoles: various dimensionalities and Mössbauer studies.

The solvothermal reactions of an equimolar mixture of FeF2 and FeF3 with Htaz (1,2,4-triazole), aqueous HF and DMF (dimethylformamide) at 120 °C yielded a series of new hybrid fluoroferrates (1-5). Their structures were characterized by either single crystal or powder X-ray diffraction data analysis. Both classes of hybrid networks were observed according to the Fe(n+)/Htaz/HF starting ratio: class I for 1 and 2 and class II for 3, 4 and 5. Four compounds, [Hdma]·(Fe2(H2O)4F6) (1), [Hdma]·(Fe2(H2O)4F6)·0.5H2O (2), Fe2F5(Htaz) (3) and [Hdma]·(Fe2F5(H2O)(Htaz)(taz)) (4), exhibit both Fe(II) and Fe(III) oxidation states while [Hdma]·(Fe2F5(taz)2) (5) contains only Fe(III) cations. [Hdma]·(Fe2(H2O)4F6) (1) and [Hdma]·(Fe2(H2O)4F6)·0.5H2O (2) contain anionic inorganic chains of alternating corner-sharing Fe(II) and Fe(III) octahedra; they are weakly hydrogen bonded to dimethylammonium cations [Hdma](+) which are formed by the in situ hydrolysis of DMF. The structure of Fe2F5(Htaz) (3) exhibits a three dimensional inorganic network resulting from the association of HTB planes of corner sharing Fe(II)F4N2 and Fe(III)F6 octahedra. [Hdma]·(Fe2F5(H2O)(Htaz)(taz)) (4) and [Hdma]·(Fe2F5(taz)2) (5) reveal two original two-dimensional sheets. In 4, the deprotonated and neutral amines connect trinuclear Fe3F10N6 units of corner-sharing octahedra and mononuclear FeN4(H2O)2 octahedra. Infinite Fe2F5(taz)2 layers in 5 are built up from dinuclear species connected by deprotonated amines along two perpendicular directions. The thermal behavior and Mössbauer spectrometry results are detailed for the first tridimensional mixed valence hybrid fluoroferrate (3).

Series of uranyl-4,4'-biphenyldicarboxylates and an occurrence of a cation-cation interaction: hydrothermal synthesis and in situ Raman studies.

Three uranium(VI)-bearing materials were synthesized hydrothermally using the organic ligand 4,4'-biphenyldicarboxylic acid: (UO2)(C14O4H8) (1); [(UO2)2(C14O4H8)2(OH)]·(NH4)(H2O) (2); (UO2)2(C14O4H8)(OH)2 (3). Compound 1 was formed after 1 day at 180 °C in an acidic environment (pH(i) = 4.03), and compounds 2 and 3 coformed after 3 days under basic conditions (pH(i) = 7.95). Coformation of all three compounds was observed at higher pH(i) (9.00). Ex situ Raman spectra of single crystals of 1-3 were collected and analyzed for signature peaks. In situ hydrothermal Raman data were also obtained and compared to the ex situ Raman spectra of the title compounds in an effort to acquire formation mechanism details. At pH(i) = 4.00, the formation of 1 was suggested by in situ Raman spectra. At an increased pH(i) (7.90), the in situ data implied the formation of compounds 1 and 3. The most basic conditions (pH(i) = 9.00) yielded a complex mixture of phases consistent with that of increased uranyl hydrolysis.

Synthesis, structure, and spectroscopy of two ternary uranium(IV) thiophosphates: UP2S9 and UP2S7 containing P2S9(2-) and P2S7(2-) ligands.

The two ternary uranium thiophosphate compounds were isolated from polychalcogenide flux reactions. UP2S9 crystallizes in the tetragonal space group P42/mcm with two formula units per unit cell, where a = 7.762(1) and c = 9.691(3) Å. UP2S7 crystallizes in the orthorhombic space group Fddd with 16 formula units per unit cell, here a = 8.919(3), b = 15.198(4), and c = 30.104(9) Å. Both compounds were characterized through single crystal X-ray, UV-vis-NIR, and Raman spectroscopy. The structures of the two compounds are formed from [US6](8-) chains connected to each other by either the tridentate-chelating P2S9(4-) in UP2S9 or the P2S7(4-) in UP2S7 resulting in 3D frameworks. These two ligands have different geometries, but they exhibit similar coordination modes, comparable to the ethane-like P2S6(4-). The uranium cations in both compounds can be assigned an unambiguous oxidation state of +4. The two compounds are semiconductors with nearly identical band-gaps of 1.41 eV.

Time-resolved assembly of chiral uranyl peroxo cage clusters containing belts of polyhedra.

Two chiral cage clusters built from uranyl polyhedra and (HPO(3))(2-) groups have been synthesized in pure yield and characterized structurally and spectroscopically in the solid state and aqueous solution. Synthesis reactions under ambient conditions in mildly acidic aqueous solutions gave clusters U(22)PO(3) and U(28)PO(3) that contain belts of four uranyl peroxide pentagonal and hexagonal bipyramids, in contrast to earlier reported uranyl peroxide cage clusters that are built from four-, five-, and six-membered rings of uranyl hexagonal bipyramids. U(22)PO(3) and U(28)PO(3) are also the first chiral uranyl-based cage clusters, the first that contain uranyl pentagonal bipyramids that contain no peroxide ligands, and the first that incorporate (HPO(3))(2-) bridges between uranyl ions. They are built from 22 uranyl polyhedra and 20 (HPO(3))(2-) groups, or 28 uranyl polyhedra and 24 (HPO(3))(2-) groups, with the outer and inner surfaces of the cages passivated by the O atoms of uranyl ions. Small-angle X-ray scattering (SAXS) profiles demonstrated that U(22)PO(3) clusters formed in solution within 1 h after mixing of reactants, and remained in solution for 2 weeks prior to crystallization. Time-resolved electrospray ionization mass spectrometry and SAXS demonstrated that U(28)PO(3) clusters formed in solution within 1 h of mixing the reactants, and remained in solution 1 month before crystallization. Crystallization of U(22)PO(3) and U(28)PO(3) is accelerated by addition of KNO(3). Clusters of U(22)PO(3) with and without encapsulated cations exhibit markedly different aqueous solubility, reflecting the importance of cluster surface charge in fostering linkages through counterions to form a stable solid.

Correlations and differences between uranium(VI) arsonates and phosphonates.

Three new uranium arsonate compounds, UO(2)(C(6)H(5))(2)As(2)O(5)(H(2)O) (UPhAs-1), UO(2)(HO(3)AsC(6)H(4)AsO(3)H)(H(2)O)·H(2)O (UPhAs-2), and UO(2)(HO(3)AsC(6)H(4)NH(2))(2)·H(2)O (UPhAs-3) have been synthesized under mild hydrothermal conditions. UPhAs-1 is constructed from UO(7) pentagonal bipyramids that are chelated by the pyroarsonate moiety, [PhAs(O(2))OAs(O(2))Ph](2-), forming chains of layered uranyl polyhedra. Two of the phenylarsonic acids are condensed in situ to form the fused tetrahedra of the pyroarsonate moiety through a metal-mediated, thermally induced condensation process. The structure of UPhAs-2 consists of UO(7) pentagonal bipyramids that are chelated by phenylenediarsonate ligands, forming one-dimensional chains of uranyl polyhedra. UPhAs-3 consists of a rare UO(6) tetragonally distorted octahedron (D(4h)) that is on a center of symmetry and linked to two pairs of adjacent 4-aminophenylarsonate ligands. This linear chain structure is networked through hydrogen bonds between the lattice water molecules and the -NH(2) moiety. All three of these compounds fluoresce at room temperature, showing characteristic vibronically coupled charge-transfer based emission.

Synthesis of a uranyl persulfide complex and quantum chemical studies of formation and topologies of hypothetical uranyl persulfide cage clusters.

The compound Na(4)[(UO(2))(S(2))(3)](CH(3)OH)(8) was synthesized at room temperature in an oxygen-free environment. It contains a rare example of the [(UO(2))(S(2))(3)](4-) complex in which a uranyl ion is coordinated by three bidentate persulfide groups. We examined the possible linkage of these units to form nanoscale cage clusters analogous to those formed from uranyl peroxide polyhedra. Quantum chemical calculations at the density functional and multiconfigurational wave function levels show that the uranyl-persulfide-uranyl, U-(S(2))-U, dihedral angles of model clusters are bent due to partial covalent interactions. We propose that this bent interaction will favor assembly of uranyl ions through persulfide bridges into curved structures, potentially similar to the family of nanoscale cage clusters built from uranyl peroxide polyhedra. However, the U-(S(2))-U dihedral angles predicted for several model structures may be too tight for them to self-assemble into cage clusters with fullerene topologies in the absence of other uranyl-ion bridges that adopt a flatter configuration. Assembly of species such as [(UO(2))(S(2))(SH)(4)](4-) or [(UO(2))(S(2))(C(2)O(4))(4)](4-) into fullerene topologies with ~60 vertices may be favored by use of large counterions.