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1.
Healthcare (Basel) ; 12(10)2024 May 17.
Article in English | MEDLINE | ID: mdl-38786451

ABSTRACT

BACKGROUND: Malnutrition is a significant and prevalent issue in hospital settings, associated with increased morbidity and mortality, longer hospital stays, higher readmission rates, and greater healthcare costs. Despite the potential impact of nutritional interventions on patient outcomes, there is a paucity of research focusing on their economic evaluation in the hospital setting. This study aims to fill this gap by conducting a cost-consequence analysis (CCA) of nutritional interventions targeting malnutrition in the hospital setting. METHODS: We performed a CCA using data from recent systematic reviews and meta-analyses, focusing on older adult patients with or at risk of malnutrition in the hospital setting. The analysis included outcomes such as 30-day, 6-month, and 12-month mortality; 30-day and 6-month readmissions; hospital complications; length of stay; and disability-adjusted life years (DALYs). Sensitivity analyses were conducted to evaluate the impact of varying success rates in treating malnutrition and the proportions of malnourished patients seen by dietitians in SingHealth institutions. RESULTS: The CCA indicated that 28.15 DALYs were averted across three SingHealth institutions due to the successful treatment or prevention of malnutrition by dietitians from 1 April 2021 to 31 March 2022, for an estimated 45,000 patients. The sensitivity analyses showed that the total DALYs averted ranged from 21.98 (53% success rate) to 40.03 (100% of malnourished patients seen by dietitians). The cost of implementing a complex nutritional intervention was USD 218.72 (USD 104.59, USD 478.40) per patient during hospitalization, with additional costs of USD 814.27 (USD 397.69, USD 1212.74) when the intervention was extended for three months post-discharge and USD 638.77 (USD 602.05, USD 1185.90) for concurrent therapy or exercise interventions. CONCLUSION: Nutritional interventions targeting malnutrition in hospital settings can have significant clinical and economic benefits. The CCA provides valuable insights into the costs and outcomes associated with these interventions, helping healthcare providers and policymakers to make informed decisions on resource allocation and intervention prioritization.

2.
Healthcare (Basel) ; 12(7)2024 Mar 31.
Article in English | MEDLINE | ID: mdl-38610187

ABSTRACT

INTRODUCTION: Malnutrition is a widespread and intricate issue among hospitalized adults, necessitating a wide variety of nutritional strategies to address its root causes and repercussions. The primary objective of this study is to systematically categorize nutritional interventions into simple or complex, based on their resource allocation, strategies employed, and predictors of intervention complexity in the context of adult malnutrition in hospital settings. METHODS: A conceptual evaluation of 100 nutritional intervention studies for adult malnutrition was conducted based on data from a recent umbrella review (patient population of mean age > 60 years). The complexity of interventions was categorized using the Medical Research Council 2021 Framework for Complex Interventions. A logistic regression analysis was employed to recognize variables predicting the complexity of interventions. RESULTS: Interventions were divided into three principal categories: education and training (ET), exogenous nutrient provision (EN), and environment and services (ES). Most interventions (66%) addressed two or more of these areas. A majority of interventions were delivered in a hospital (n = 75) or a hospital-to-community setting (n = 25), with 64 studies being classified as complex interventions. The logistic regression analysis revealed three variables associated with intervention complexity: the number of strategies utilized, the targeted areas, and the involvement of healthcare professionals. Complex interventions were more likely to be tailored to individual needs and engage multiple healthcare providers. CONCLUSIONS: The study underlines the importance of considering intervention complexity in addressing adult malnutrition. Findings advocate for a comprehensive approach to characterizing and evaluating nutritional interventions in future research. Subsequent investigations should explore optimal balances between intervention complexity and resource allocation, and assess the effectiveness of complex interventions across various settings, while considering novel approaches like telehealth.

3.
Nat Methods ; 21(5): 804-808, 2024 May.
Article in English | MEDLINE | ID: mdl-38191935

ABSTRACT

Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.


Subject(s)
Neuroimaging , Software , Neuroimaging/methods , Humans , User-Computer Interface , Reproducibility of Results , Brain/diagnostic imaging
4.
J Gen Intern Med ; 39(6): 1048-1052, 2024 May.
Article in English | MEDLINE | ID: mdl-38169026

ABSTRACT

Medical students (NSB, NM, JDW) spearheaded revision of the policy and clinical practice for shackling incarcerated patients at Boston Medical Center (BMC), the largest safety net hospital in New England. In American hospitals, routine shackling of incarcerated patients with metal restraints is widespread-except for perinatal patients-regardless of consciousness, mobility, illness severity, or age. The modified policy includes individualized assessments and allows incarcerated patients to be unshackled if they meet defined criteria. The students also formed the Stop Shackling Patients Coalition (SSP Coalition) of clinicians, public health practitioners, human rights advocates, and community members determined to humanize the inpatient treatment of incarcerated patients. Changes pioneered at BMC led the Mass General Brigham health system to follow suit. The Massachusetts Medical Society adopted a resolution authored by the SSP Coalition, which condemned universal shackling and advocated for use of the least restrictive alternative. This will be presented to the American Medical Association in June 2024. The Coalition led a similar effort to coauthor a policy statement on the issue, which was formally adopted by the American Public Health Association in November 2023. Most importantly, in an unprecedented human rights victory, a BMC patient who was incarcerated, sedated, and intubated was unshackled by correctional officers for the purpose of preserving human dignity.


Subject(s)
Human Rights , Humans , Restraint, Physical , Boston
5.
J Neural Eng ; 20(4)2023 08 23.
Article in English | MEDLINE | ID: mdl-37567215

ABSTRACT

Objective. To use a recurrent neural network (RNN) to reconstruct neural activity responsible for generating noninvasively measured electromagnetic signals.Approach. Output weights of an RNN were fixed as the lead field matrix from volumetric source space computed using the boundary element method with co-registered structural magnetic resonance images and magnetoencephalography (MEG). Initially, the network was trained to minimise mean-squared-error loss between its outputs and MEG signals, causing activations in the penultimate layer to converge towards putative neural source activations. Subsequently, L1 regularisation was applied to the final hidden layer, and the model was fine-tuned, causing it to favour more focused activations. Estimated source signals were then obtained from the outputs of the last hidden layer. We developed and validated this approach with simulations before applying it to real MEG data, comparing performance with beamformers, minimum-norm estimate, and mixed-norm estimate source reconstruction methods.Main results. The proposed RNN method had higher output signal-to-noise ratios and comparable correlation and error between estimated and simulated sources. Reconstructed MEG signals were also equal or superior to the other methods regarding their similarity to ground-truth. When applied to MEG data recorded during an auditory roving oddball experiment, source signals estimated with the RNN were generally biophysically plausible and consistent with expectations from the literature.Significance. This work builds on recent developments of RNNs for modelling event-related neural responses by incorporating biophysical constraints from the forward model, thus taking a significant step towards greater biological realism and introducing the possibility of exploring how input manipulations may influence localised neural activity.


Subject(s)
Brain , Electroencephalography , Brain/physiology , Electroencephalography/methods , Brain Mapping/methods , Magnetoencephalography/methods , Neural Networks, Computer , Electromagnetic Phenomena , Algorithms
6.
Proc Natl Acad Sci U S A ; 120(20): e2220725120, 2023 05 16.
Article in English | MEDLINE | ID: mdl-37155857

ABSTRACT

Dissimilatory sulfate reduction (DSR) mediated by sulfate-reducing microorganisms (SRMs) plays a pivotal role in global sulfur, carbon, oxygen, and iron cycles since at least 3.5 billion y ago. The canonical DSR pathway is believed to be sulfate reduction to sulfide. Herein, we report a DSR pathway in phylogenetically diverse SRMs through which zero-valent sulfur (ZVS) is directly generated. We identified that approximately 9% of sulfate reduction was directed toward ZVS with S8 as a predominant product, and the ratio of sulfate-to-ZVS could be changed with SRMs' growth conditions, particularly the medium salinity. Further coculturing experiments and metadata analyses revealed that DSR-derived ZVS supported the growth of various ZVS-metabolizing microorganisms, highlighting this pathway as an essential component of the sulfur biogeochemical cycle.


Subject(s)
Sulfates , Sulfur , Sulfates/metabolism , Oxidation-Reduction , Sulfur/metabolism , Sulfides/metabolism , Sulfur Oxides
7.
Front Microbiol ; 14: 1095191, 2023.
Article in English | MEDLINE | ID: mdl-37065130

ABSTRACT

Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their damage to the petroleum industry, our molecular understanding of their physiology remains limited. To systematically provide new insights into SRB biology, we generated a randomly barcoded transposon mutant library in the model SRB Desulfovibrio vulgaris Hildenborough (DvH) and used this genome-wide resource to assay the importance of its genes under a range of metabolic and stress conditions. In addition to defining the essential gene set of DvH, we identified a conditional phenotype for 1,137 non-essential genes. Through examination of these conditional phenotypes, we were able to make a number of novel insights into our molecular understanding of DvH, including how this bacterium synthesizes vitamins. For example, we identified DVU0867 as an atypical L-aspartate decarboxylase required for the synthesis of pantothenic acid, provided the first experimental evidence that biotin synthesis in DvH occurs via a specialized acyl carrier protein and without methyl esters, and demonstrated that the uncharacterized dehydrogenase DVU0826:DVU0827 is necessary for the synthesis of pyridoxal phosphate. In addition, we used the mutant fitness data to identify genes involved in the assimilation of diverse nitrogen sources and gained insights into the mechanism of inhibition of chlorate and molybdate. Our large-scale fitness dataset and RB-TnSeq mutant library are community-wide resources that can be used to generate further testable hypotheses into the gene functions of this environmentally and industrially important group of bacteria.

8.
Res Sq ; 2023 Mar 13.
Article in English | MEDLINE | ID: mdl-36993557

ABSTRACT

Neuroimaging data analysis often requires purpose-built software, which can be challenging to install and may produce different results across computing environments. Beyond being a roadblock to neuroscientists, these issues of accessibility and portability can hamper the reproducibility of neuroimaging data analysis pipelines. Here, we introduce the Neurodesk platform, which harnesses software containers to support a comprehensive and growing suite of neuroimaging software (https://www.neurodesk.org/). Neurodesk includes a browser-accessible virtual desktop environment and a command line interface, mediating access to containerized neuroimaging software libraries on various computing platforms, including personal and high-performance computers, cloud computing and Jupyter Notebooks. This community-oriented, open-source platform enables a paradigm shift for neuroimaging data analysis, allowing for accessible, flexible, fully reproducible, and portable data analysis pipelines.

9.
Neuroimage ; 247: 118797, 2022 02 15.
Article in English | MEDLINE | ID: mdl-34896585

ABSTRACT

Bilinguals are known to switch language spontaneously in everyday conversations, even if there are no external requirements to do so. However, in the laboratory setting, language control is often investigated using forced switching tasks, which result in significant performance costs. The present study assessed whether switching would be less costly when performed in a more natural fashion, and what factors might account for this. Mandarin-English bilinguals engaged in language switching under three different contexts with varied task demands. We examined two factors which may be characteristic of natural switching: (i) freedom of language selection; (ii) consistency of language used to name each item. Participants' brain activities were recorded using magnetoencephalography (MEG), along with behavioural measures of reaction speed and accuracy. The natural context (with both free selection and consistent language use for each item) produced better performance overall, showing reduced mixing cost and no significant switch cost. The neural effect of language mixing was also reversed in this context, suggesting that freely mixing two languages was easier than staying in a single language. Further, while switching in the forced context elicited increased brain activity in the right inferior frontal gyrus, this switch effect disappeared when the language used to name each item was consistent. Together, these findings demonstrate that the two factors above conjointly contribute to eliminating significant performance costs and cognitive demands associated with language switching and mixing. Such evidence aligns with lexical selection models which do not assume bilingual production to be inherently effortful.


Subject(s)
Cognition/physiology , Multilingualism , Adult , Executive Function , Female , Humans , Language , Magnetoencephalography , Male , Prefrontal Cortex/physiology , Reaction Time , Young Adult
10.
Front Microbiol ; 12: 757856, 2021.
Article in English | MEDLINE | ID: mdl-34956122

ABSTRACT

Pseudomonas species are ubiquitous in nature and include numerous medically, agriculturally and technologically beneficial strains of which the interspecific interactions are of great interest for biotechnologies. Specifically, co-cultures containing Pseudomonas stutzeri have been used for bioremediation, biocontrol, aquaculture management and wastewater denitrification. Furthermore, the use of P. stutzeri biofilms, in combination with consortia-based approaches, may offer advantages for these processes. Understanding the interspecific interaction within biofilm co-cultures or consortia provides a means for improvement of current technologies. However, the investigation of biofilm-based consortia has been limited. We present an adaptable and scalable method for the analysis of macroscopic interactions (colony morphology, inhibition, and invasion) between colony-forming bacterial strains using an automated printing method followed by analysis of the genes and metabolites involved in the interactions. Using Biofilm Interaction Mapping and Analysis (BIMA), these interactions were investigated between P. stutzeri strain RCH2, a denitrifier isolated from chromium (VI) contaminated soil, and 13 other species of pseudomonas isolated from non-contaminated soil. One interaction partner, Pseudomonas fluorescens N1B4 was selected for mutant fitness profiling of a DNA-barcoded mutant library; with this approach four genes of importance were identified and the effects on interactions were evaluated with deletion mutants and mass spectrometry based metabolomics.

11.
Front Immunol ; 12: 754127, 2021.
Article in English | MEDLINE | ID: mdl-34777366

ABSTRACT

COVID-19 presentations range from mild to moderate through severe disease but also manifest with persistent illness or viral recrudescence. We hypothesized that the spectrum of COVID-19 disease manifestations was a consequence of SARS-CoV-2-mediated delay in the pathogen-associated molecular pattern (PAMP) response, including dampened type I interferon signaling, thereby shifting the balance of the immune response to be dominated by damage-associated molecular pattern (DAMP) signaling. To test the hypothesis, we constructed a parsimonious mechanistic mathematical model. After calibration of the model for initial viral load and then by varying a few key parameters, we show that the core model generates four distinct viral load, immune response and associated disease trajectories termed "patient archetypes", whose temporal dynamics are reflected in clinical data from hospitalized COVID-19 patients. The model also accounts for responses to corticosteroid therapy and predicts that vaccine-induced neutralizing antibodies and cellular memory will be protective, including from severe COVID-19 disease. This generalizable modeling framework could be used to analyze protective and pathogenic immune responses to diverse viral infections.


Subject(s)
Alarmins/immunology , COVID-19 Drug Treatment , COVID-19 , Models, Biological , SARS-CoV-2 , Adrenal Cortex Hormones/therapeutic use , Adult , Aged , Anti-Inflammatory Agents/therapeutic use , Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , COVID-19/diagnosis , COVID-19/immunology , COVID-19/virology , COVID-19 Vaccines , Humans , Middle Aged , Reproducibility of Results , Viral Load
12.
Environ Res ; 202: 111918, 2021 11.
Article in English | MEDLINE | ID: mdl-34419465

ABSTRACT

Nowadays world deals with a lot of environmental troubles out of which water pollution is very dangerous. Water gets contaminated by heavy metal ions is a universal problem which needs suitable consideration to keep up the quality of the water. It will be advantageous that an easy device can be detecting the concentration of heavy metal ions in water. Here, a contaminant, cadmium from industrial affluent into water is considered and focused. Gold nanoparticles (AuNPs) have been synthesized by Solanum trilobatum leaf extract and its applications of antifungal and sensing activity was reported here. The influences of different concentration of these reducing agent on the synthesis of AuNPs (G5 and G10) have been evaluated. The structural, optical, vibrational, morphological and compositional properties of the AuNPs were studied through XRD, UV-vis spectra, FTIR, HRTEM and EDAX analysis. The optical studies showed surface plasmon absorbance peak at 526 nm. It shows that the absorbance of the peak becomes narrow with a higher concentration of leaf extract. XRD results showed the average size of the AuNPs was 8 nm. It also confirmed the high crystallinity of nanoparticles. FTIR exposes that amine and carboxyl groups may be involved in the stabilization and reduction mechanism. TEM pictures of both G10 and G5 demonstrate merely spherical nanoparticles. This morphology control is taken place owing to the adsorbed amine and carboxyl groups onto the gold nanoparticles cap the particles and improve the stability. The presence of gold elements in the sample was identified with the help of EDAX. The sensitivity of the system towards various Cd2+ concentrations was measured as 0.058/mM for G5 and 0.095/mM for G10. The prepared nanoparticles produced highest zone of inhibition (ZOI) of 17.5 mm and 19 mm against human being pathogenic fungi Aspergillus Flavus and Candida albicans respectively. Here, small sized spherical nanoparticles showed good antifungal activity.


Subject(s)
Metal Nanoparticles , Solanum , Cadmium , Gold , Green Chemistry Technology , Humans , Photochemistry , Plant Extracts , Water
13.
mSystems ; 6(3): e0049321, 2021 Jun 29.
Article in English | MEDLINE | ID: mdl-34061571

ABSTRACT

Hexavalent chromium [Cr(VI)] is a common environmental pollutant. However, little is known about the genetic basis of microbial evolution under Cr(VI) stress and the influence of the prior evolution histories on the subsequent evolution under Cr(VI) stress. In this study, Desulfovibrio vulgaris Hildenborough (DvH), a model sulfate-reducing bacterium, was experimentally evolved for 600 generations. By evolving the replicate populations of three genetically diverse DvH clones, including ancestor (AN, without prior experimental evolution history), non-stress-evolved EC3-10, and salt stress-evolved ES9-11, the contributions of adaptation, chance, and pre-existing genetic divergence to the evolution under Cr(VI) stress were able to be dissected. Significantly decreased lag phases under Cr(VI) stress were observed in most evolved populations, while increased Cr(VI) reduction rates were primarily observed in populations evolved from EC3-10 and ES9-11. The pre-existing genetic divergence in the starting clones showed strong influences on the changes in lag phases, growth rates, and Cr(VI) reduction rates. Additionally, the genomic mutation spectra in populations evolved from different starting clones were significantly different. A total of 14 newly mutated genes obtained mutations in at least two evolved populations, suggesting their importance in Cr(VI) adaptation. An in-frame deletion mutation of one of these genes, the chromate transporter gene DVU0426, demonstrated that it played an important role in Cr(VI) tolerance. Overall, our study identified potential key functional genes for Cr(VI) tolerance and demonstrated the important role of pre-existing genetic divergence in evolution under Cr(VI) stress conditions. IMPORTANCE Chromium is one of the most common heavy metal pollutants of soil and groundwater. The potential of Desulfovibrio vulgaris Hildenborough in heavy metal bioremediation such as Cr(VI) reduction was reported previously; however, experimental evidence of key functional genes involved in Cr(VI) resistance are largely unknown. Given the genetic divergence of microbial populations in nature, knowledge on how this divergence affects the microbial adaptation to a new environment such as Cr(VI) stress is very limited. Taking advantage of our previous study, three groups of genetically diverse D. vulgaris Hildenborough populations with or without prior experimental evolution histories were propagated under Cr(VI) stress for 600 generations. Whole-population genome resequencing of the evolved populations revealed the genomic changes underlying the improved Cr(VI) tolerance. The strong influence of the pre-existing genetic divergence in the starting clones on evolution under Cr(VI) stress conditions was demonstrated at both phenotypic and genetic levels.

14.
J Wildl Dis ; 57(3): 632-636, 2021 07 01.
Article in English | MEDLINE | ID: mdl-33787901

ABSTRACT

The variable response of wild mice to Yersinia pestis infection, the causative agent of plague, has generated much speculation concerning their role in the ecology of this potentially lethal disease. Researchers have questioned the means by which Y. pestis is maintained in nature and also sought methods for managing the disease. Here we assessed the efficacy of a new tool, the sylvatic plague vaccine (SPV), in wild-caught northern grasshopper mice (Onychomys leucogaster) and commercially acquired Sonoran deer mice (Peromyscus maniculatus sonoriensis). More than 40% of the animals survived a subcutaneous Y. pestis challenge of 175,000 colony forming units (over 30,000 times the white mouse 50% lethal dose) in both vaccine-treated and control groups. Our results indicate that SPV distribution is unlikely to protect adult mice from plague infection in field settings and corroborate the heterogeneous response to Y. pestis infection in mice reported by others.


Subject(s)
Mice/microbiology , Peromyscus/microbiology , Plague Vaccine , Plague/veterinary , Rodent Diseases , Yersinia pestis , Animals , Plague/prevention & control , Rodent Diseases/microbiology , Rodent Diseases/prevention & control
15.
Microbiol Resour Announc ; 10(11)2021 Mar 18.
Article in English | MEDLINE | ID: mdl-33737356

ABSTRACT

The dissimilatory sulfate-reducing deltaproteobacterium Desulfovibrio vulgaris Hildenborough (ATCC 29579) was chosen by the research collaboration ENIGMA to explore tools and protocols for bringing this anaerobe to model status. Here, we describe a collection of genetic constructs generated by ENIGMA that are available to the research community.

16.
ISME J ; 14(11): 2862-2876, 2020 11.
Article in English | MEDLINE | ID: mdl-32934357

ABSTRACT

Elevated nitrate in the environment inhibits sulfate reduction by important microorganisms of sulfate-reducing bacteria (SRB). Several SRB may respire nitrate to survive under elevated nitrate, but how SRB that lack nitrate reductase survive to elevated nitrate remains elusive. To understand nitrate adaptation mechanisms, we evolved 12 populations of a model SRB (i.e., Desulfovibrio vulgaris Hildenborough, DvH) under elevated NaNO3 for 1000 generations, analyzed growth and acquired mutations, and linked their genotypes with phenotypes. Nitrate-evolved (EN) populations significantly (p < 0.05) increased nitrate tolerance, and whole-genome resequencing identified 119 new mutations in 44 genes of 12 EN populations, among which six functional gene groups were discovered with high mutation frequencies at the population level. We observed a high frequency of nonsense or frameshift mutations in nitrosative stress response genes (NSR: DVU2543, DVU2547, and DVU2548), nitrogen regulatory protein C family genes (NRC: DVU2394-2396, DVU2402, and DVU2405), and nitrate cluster (DVU0246-0249 and DVU0251). Mutagenesis analysis confirmed that loss-of-functions of NRC and NSR increased nitrate tolerance. Also, functional gene groups involved in fatty acid synthesis, iron regulation, and two-component system (LytR/LytS) known to be responsive to multiple stresses, had a high frequency of missense mutations. Mutations in those gene groups could increase nitrate tolerance through regulating energy metabolism, barring entry of nitrate into cells, altering cell membrane characteristics, or conferring growth advantages at the stationary phase. This study advances our understanding of nitrate tolerance mechanisms and has important implications for linking genotypes with phenotypes in DvH.


Subject(s)
Desulfovibrio vulgaris , Desulfovibrio , Desulfovibrio vulgaris/genetics , Genotype , Nitrates , Nitrogen Oxides , Oxidation-Reduction , Sulfates
17.
Brain Sci ; 10(8)2020 Aug 05.
Article in English | MEDLINE | ID: mdl-32764300

ABSTRACT

A prominent theory of bilingual speech production holds that appropriate language selection is achieved via inhibitory control. Such inhibition may operate on the whole-language and/or item-specific level. In this study, we examined these two levels of control in parallel, by introducing a novel element into the traditional cued language switching paradigm: half of the stimuli were univalent (each required naming in the same language every time it appeared), and the other half were bivalent (each required naming in different languages on different trials). Contrasting switch and stay trials provided an index for whole-language inhibition, while contrasting bivalent and univalent stimuli provided an index for item-specific inhibition. We then investigated the involvement of domain-general brain mechanisms in these two levels of language control. Neuroimaging studies report activation of the pre-supplementary motor area (pre-SMA), a key region in the executive control brain network, during language switching tasks. However, it is unclear whether or not the pre-SMA plays a causal role in language control, and at which level it exerts control. Using repetitive transcranial magnetic stimulation (TMS) to transiently disrupt the pre-SMA, we observed an essential role of this brain region in general speech execution, while evidence for its specific involvement in each level of inhibition remains inconclusive.

18.
mBio ; 11(4)2020 08 18.
Article in English | MEDLINE | ID: mdl-32817099

ABSTRACT

Adaptation via natural selection is an important driver of evolution, and repeatable adaptations of replicate populations, under conditions of a constant environment, have been extensively reported. However, isolated groups of populations in nature tend to harbor both genetic and physiological divergence due to multiple selective pressures that they have encountered. How this divergence affects adaptation of these populations to a new common environment remains unclear. To determine the impact of prior genetic and physiological divergence in shaping adaptive evolution to accommodate a new common environment, an experimental evolution study with the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough (DvH) was conducted. Two groups of replicate populations with genetic and physiological divergence, derived from a previous evolution study, were propagated in an elevated-temperature environment for 1,000 generations. Ancestor populations without prior experimental evolution were also propagated in the same environment as a control. After 1,000 generations, all the populations had increased growth rates and all but one had greater fitness in the new environment than the ancestor population. Moreover, improvements in growth rate were moderately affected by the divergence in the starting populations, while changes in fitness were not significantly affected. The mutations acquired at the gene level in each group of populations were quite different, indicating that the observed phenotypic changes were achieved by evolutionary responses that differed between the groups. Overall, our work demonstrated that the initial differences in fitness between the starting populations were eliminated by adaptation and that phenotypic convergence was achieved by acquisition of mutations in different genes.IMPORTANCE Improving our understanding of how previous adaptation influences evolution has been a long-standing goal in evolutionary biology. Natural selection tends to drive populations to find similar adaptive solutions for the same selective conditions. However, variations in historical environments can lead to both physiological and genetic divergence that can make evolution unpredictable. Here, we assessed the influence of divergence on the evolution of a model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough, in response to elevated temperature and found a significant effect at the genetic but not the phenotypic level. Understanding how these influences drive evolution will allow us to better predict how bacteria will adapt to various ecological constraints.


Subject(s)
Adaptation, Physiological/genetics , Desulfovibrio vulgaris/genetics , Genetic Fitness , Sulfates/metabolism , Temperature , Bacterial Physiological Phenomena/genetics , Desulfovibrio vulgaris/physiology , Directed Molecular Evolution , Genetic Variation , Mutation , Oxidation-Reduction
19.
Chemosphere ; 255: 126951, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32417512

ABSTRACT

The processing of sediment to accurately characterize the spatially-resolved depth profiles of geophysical and geochemical properties along with signatures of microbial density and activity remains a challenge especially in complex contaminated areas. This study processed cores from two sediment boreholes from background and contaminated core sediments and surrounding groundwater. Fresh core sediments were compared by depth to capture the changes in sediment structure, sediment minerals, biomass, and pore water geochemistry in terms of major and trace elements including pollutants, cations, anions, and organic acids. Soil porewater samples were matched to groundwater level, flow rate, and preferential flows and compared to homogenized groundwater-only samples from neighboring monitoring wells. Groundwater analysis of nearby wells only revealed high sulfate and nitrate concentrations while the same analysis using sediment pore water samples with depth was able to suggest areas high in sulfate- and nitrate-reducing bacteria based on their decreased concentration and production of reduced by-products that could not be seen in the groundwater samples. Positive correlations among porewater content, total organic carbon, trace metals and clay minerals revealed a more complicated relationship among contaminant, sediment texture, groundwater table, and biomass. The fluctuating capillary interface had high concentrations of Fe and Mn-oxides combined with trace elements including U, Th, Sr, Ba, Cu, and Co. This suggests the mobility of potentially hazardous elements, sediment structure, and biogeochemical factors are all linked together to impact microbial communities, emphasizing that solid interfaces play an important role in determining the abundance of bacteria in the sediments.


Subject(s)
Geologic Sediments/chemistry , Uranium/chemistry , Water Pollutants, Radioactive/chemistry , Bacteria , Groundwater/chemistry , Nitrates/analysis , Organic Chemicals , Sulfates/analysis , Uranium/analysis , Water Pollutants, Radioactive/analysis
20.
Cognition ; 199: 104247, 2020 06.
Article in English | MEDLINE | ID: mdl-32146171

ABSTRACT

Bilinguals have a remarkable ability to juggle two languages. A central question in the field is concerned with the control mechanisms that enable bilinguals to switch language with ease. Theoretical models and neuroimaging evidence suggest that a range of control processes are at play during language switching, and their underlying neural mechanisms are closely related to executive function. What remains unclear is when these control processes are engaged in language switching. In this study, we used magnetoencephalography (MEG) to examine the brain activity while unbalanced Mandarin-English bilinguals performed a digit-naming task with cued language switching. Following presentation of the language cue, an asymmetrical switch effect was observed in the left inferior frontal gyrus (IFG), where switch-related increase in evoked brain activity was larger for switching into the non-dominant language. Following presentation of the naming target, evoked brain activity in the right IFG was larger when naming was required in the non-dominant language compared to the dominant language. We conclude that control processes take place in two stages during language switching, with the left IFG resolving interference following cue presentation and the right IFG inhibiting competing labels following target presentation.


Subject(s)
Executive Function , Multilingualism , Cues , Language , Magnetoencephalography
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