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J Struct Biol ; 216(2): 108094, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38653343

ABSTRACT

This study synthesized and evaluated a series of benzotriazole derivatives denoted 3(a-j) and 6(a-j) for their anti-HIV-1 RT activities compared to the standard drug efavirenz. Notably, compound 3 h, followed closely by 6 h, exhibited significant anti-HIV-1 RT efficacy relative to the standard drug. In vivo oral toxicity studies were conducted for the most active compound 3 h, confirming its nontoxic nature to ascertain the safety profile. By employing molecular docking techniques, we explored the potential interactions between the synthesized compounds (ligands) and a target biomolecule (protein)(PDB ID 1RT2) at the molecular level. We undertook the molecular dynamics study of 3 h, the most active compound, within the active binding pocket of the cocrystallized structure of HIV-1 RT (PDB ID 1RT2). We aimed to learn more about how biomolecular systems behave, interact, and change at the atomic or molecular level over time. Finally, the DFT-derived HOMO and LUMO orbitals, as well as analysis of the molecular electrostatic potential map, aid in discerning the reactivity characteristics of our molecule.


Subject(s)
Anti-HIV Agents , HIV-1 , Molecular Docking Simulation , Triazoles , Triazoles/chemistry , Triazoles/pharmacology , Anti-HIV Agents/chemistry , Anti-HIV Agents/pharmacology , HIV-1/drug effects , HIV Reverse Transcriptase/antagonists & inhibitors , HIV Reverse Transcriptase/chemistry , HIV Reverse Transcriptase/metabolism , Humans , Molecular Dynamics Simulation , Reverse Transcriptase Inhibitors/chemistry , Reverse Transcriptase Inhibitors/pharmacology , Reverse Transcriptase Inhibitors/toxicity , Models, Molecular , Density Functional Theory , Structure-Activity Relationship , Alkynes/chemistry , Animals , Cyclopropanes/toxicity , Benzoxazines/chemistry , Benzoxazines/pharmacology
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