ABSTRACT
The development of an organism is orchestrated by the spatial and temporal expression of genes. Accurate visualisation of gene expression patterns in the context of the surrounding tissues offers a glimpse into the mechanisms that drive morphogenesis. We developed correlative light-sheet fluorescence microscopy and X-ray computed tomography approach to map gene expression patterns to the whole organism`s 3D anatomy. We show that this multimodal approach is applicable to gene expression visualized by protein-specific antibodies and fluorescence RNA in situ hybridisation offering a detailed understanding of individual phenotypic variations in model organisms. Furthermore, the approach offers a unique possibility to identify tissues together with their 3D cellular and molecular composition in anatomically less-defined in vitro models, such as organoids. We anticipate that the visual and quantitative insights into the 3D distribution of gene expression within tissue architecture, by multimodal approach developed here, will be equally valuable for reference atlases of model organisms development, as well as for comprehensive screens, and morphogenesis studies of in vitro models.
Subject(s)
Antibodies , Tomography, X-Ray Computed , In Situ Hybridization, Fluorescence , Microscopy, Fluorescence , Gene ExpressionABSTRACT
The beetle family Ptilodactylidae contains more than 500 extant species; however, its fossil record is scarce and remains understudied. In this study, we describe a new species of Ptilodactylidae, Ptilodactyla eocenica Kundrata, Bukejs and Blank, sp. nov., based on a relatively well-preserved specimen from Baltic amber. We use X-ray microcomputed tomography to reconstruct its morphology since some of the principal diagnostic characters have been obscured by opaque bubbles. It is the third ptilodactylid species described from Baltic amber, and the first one belonging to the subfamily Ptilodactylinae. Additionally, we summarize the classification, diversity, and distribution of both extinct and extant Ptilodactylidae.
ABSTRACT
A new species of the genus Eusphalerum Kraatz, 1857 (Omaliinae) from the Eocene Baltic amber is described and illustrated: Eu. bukejsi Shavrin, sp.n. The specimen was studied using X-ray micro-computed tomography (µCT), to obtain images of the habitus, body parts and aedeagus. Based on the shape of the aedeagus, it was compared with East Asian species of pollens and japonicum groups.
Subject(s)
Amber , Coleoptera/anatomy & histology , Coleoptera/classification , Animals , Baltic States , Fossils , X-Ray MicrotomographyABSTRACT
The subfamily Aneurinae of the flat bug family Aradidae (Hemiptera: Heteroptera) contains about 150 extant species assigned to seven genera, and seven fossil species of which six were described from Eocene Baltic amber and one from Cretaceous Burmese amber. A new species Aneurus damzeni sp. nov. from Baltic amber is described and illustrated using X-ray micro-computed tomography (µCT) reconstructing concealed morphological characters. A key to all five extant and fossil Aneurinae species with triangular scutellum is provided.
Subject(s)
Heteroptera , Amber , Animals , Baltic States , Fossils , Heteroptera/classification , Heteroptera/physiology , X-Ray MicrotomographyABSTRACT
A new species of Mycetophagidae belonging to the genus Litargus, namely L. (Litargosomus) dantiscensis Alekseev, Kupryjanowicz et Bukejs sp. nov., is described and figured from Eocene Baltic amber using X-ray micro-computed tomography (µCT). Three additional specimens of a mycetophagid beetle that is rather common in Baltic amber, Crowsonium succinium Abdullah, are also reported. Prototoma striata Heer, which was originally placed in Mycetophagidae, is discussed based on its original description and illustration: it is proposed that the position incertae sedis within Coleoptera be given to this Early Jurassic fossil. Consequently, the records of Mycetophagidae from Eocene European amber should be considered the earliest occurrence of the family known to date.
Subject(s)
Amber , Coleoptera , Animals , Baltic States , Fossils , X-Ray MicrotomographyABSTRACT
Based on a single well-preserved specimen from Eocene Baltic amber, a new tenebrionid beetle Neomida groehni Nabozhenko et Bukejs sp. nov. (Diaperinae: Diaperini) is described and illustrated using phase-contrast X-ray microtomography. This oldest representative of the genus differs from all known extant and extinct congeners by the dorsally very weakly convex pronotum with undulate lateral margins (while other Neomida have a pronotum that is strongly convex along its transverse axis, with evenly rounded lateral margins); distinct, right posterior angles of pronotum; and elevated sutural area of the elytra.
