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1.
Cancer Treat Res Commun ; 36: 100738, 2023.
Article in English | MEDLINE | ID: mdl-37390791

ABSTRACT

BACKGROUND: The combination of endocrine treatment with cycline-dependent-kinase 4/6 inhibitor is the new standard of treatment in hormone receptor-positive HER2 negative metastatic breast cancer. The optimal subsequent treatment after CDK4/6 inhibitor remain unclear. As recommended by standard guidelines, capecitabine, an oral chemotherapy is a therapeutic option in endocrine resistant metastatic breast cancer. The objective of this study was to evaluate capecitabine efficacy after disease progression under combination of ET and CDK4/6 inhibitor in a hormone receptor positive metastatic breast cancer population. PATIENTS AND METHODS: Patients progressing under CDK 4/6 inhibitor plus ET and treated with capecitabine, between January 2016 and December 2020, were retrospectively included. Primary endpoint was time to treatment failure (TTF) on capecitabine. Logistic regression were used to identify predictive factors: exclusive bone versus visceral metastases, first-line versus ≥ 2 lines of combination therapy, aromatase inhibitor (AI) versus fulvestrant. RESULTS: Fifty-six patients with a 62-year median age (IC95% 42-81) were analyzed. The CDK 4/6 inhibitor and ET combination was prescribed in first-line setting in 26 patients (46%). Twenty-five patients (44%) had exclusive bone metastasis. Median TTF was 6.1 months. Six patients discontinued capecitabine due to toxicity. Outcomes were not significantly different regardless of metastases localization, ET, and treatment line of the combination of CDK 4/6 inhibitor and ET. Median PFS was 7.1 months. Median OS was 41.3 months. CONCLUSION: Compared to other data of capecitabine prescribed in patients with hormonal resistant MBC, this retrospective study suggests that capecitabine remains effective after CDK 4/6 inhibitor plus ET progression, regardless of therapeutic-line setting and metastases localization. MICRO ABSTRACT: Cycline dependant kinase 4/6 inhibitor plus endocrine therapy have become the standard of care in metastatic hormone receptor positive (HR+) breast cancer (BC). Few data reported the optimal subsequent therapy after progression under the combination. Capecitabine is a therapeutic option in endocrine resistant HR+/HER2- metastatic breast cancer. Data evaluating efficacy of capecitabine after disease progression on endocrine therapy plus cycline-dependant kinase 4/6 inhibitor are poor. This study showed a 6.1-month median time to treatment failure on capecitabine. Capecitabine remained effective regardless of therapeutic-line setting and metastases localization.


Subject(s)
Antineoplastic Agents , Breast Neoplasms , Humans , Female , Capecitabine/pharmacology , Capecitabine/therapeutic use , Breast Neoplasms/drug therapy , Breast Neoplasms/pathology , Retrospective Studies , Receptor, ErbB-2 , Antineoplastic Agents/therapeutic use , Protein Kinase Inhibitors/pharmacology , Protein Kinase Inhibitors/therapeutic use , Disease Progression
2.
Breast Cancer Res Treat ; 198(1): 23-29, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36562910

ABSTRACT

PURPOSE: A 4-weekly schedule of pegylated liposomal doxorubicin (PLD) has been approved for the treatment of metastatic breast cancer (MBC). Phase II trials have suggested interest in a 2-weekly regimen. This study aimed to compare the efficacy and safety of these two schedules. METHODS: Data from MBC patients treated with PLD between 2011 and 2021 were retrospectively collected. The objective was to demonstrate the noninferiority of the 2-weekly versus the 4-weekly schedule in terms of 6-month progression-free survival (PFS). The prespecified noninferiority margin was calculated as 1.20. A propensity score to receive either schedule was estimated using a gradient boosting algorithm. Survival analyses using Cox regression models weighted by the propensity score were performed to compare the schedules. RESULTS: Among the 192 patients included, 96 (50%) underwent each schedule. The median number of previous systemic therapies was 4 (IQR, 3 to 6). Anthracyclines were previously given in early breast cancer in 63.9% of patients. The median follow-up was 10.0 months (IQR, 5.0 to 20.1). A comparable distribution of adverse events was observed. The median PFS was 3.2 months (95% CI, 2.9 to 3.9), and the median overall survival was 12.1 months (95% CI, 10.8 to 14.9). The weighted hazard ratio for PFS was 1.12 (90% CI, 0.82 to 1.54), including the noninferiority boundaries. CONCLUSION: PLD appeared to be a well-tolerated drug in this heavily pretreated MBC population. The efficacy and safety of the 2-weekly schedule did not provide any advantage, suggesting no interest in changing the registered regimen.


Subject(s)
Antibiotics, Antineoplastic , Breast Neoplasms , Doxorubicin , Female , Humans , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Breast Neoplasms/pathology , Doxorubicin/adverse effects , Polyethylene Glycols/adverse effects , Propensity Score , Retrospective Studies , Treatment Outcome
3.
Am J Manag Care ; 17(6 Spec No.): e224-30, 2011 Jun 01.
Article in English | MEDLINE | ID: mdl-21756016

ABSTRACT

OBJECTIVE: To examine the effect of an integrated, clinician-focused telehealth monitoring system on the probability of hospitalization within the first 30-day episode of home healthcare. STUDY DESIGN: Retrospective, nonexperimental design. METHODS: The study sample includes 2009 data from 5873 Medicare beneficiaries receiving home healthcare services through a network of community-based home health agencies operating in Texas and Louisiana. Propensity-score matching was used to control for selection bias. Logistic regression and postestimation parameter simulation were used to assess how the use of an integrated, clinician-focused telehealth monitoring system might affect the probability of hospitalization during the first 30-day episode of home healthcare. RESULTS: The 30-day probability of hospitalization for telehealth and non-telehealth patients was 10.3% and 17.1%, respectively. Patients in the telehealth group had a 7-percentage-point (95% confidence interval 4.2, 9.4) lower probability of hospitalization within the first 30-day episode of home healthcare than those in the non-telehealth group. CONCLUSION: The use of an integrated, clinician focused telehealth monitoring system can substantially reduce the 30-day probability of hospitalization for home healthcare patients. Telehealth monitoring systems that integrate skilled clinicians can lead to substantial hospitalization-related cost savings.


Subject(s)
Home Care Services/statistics & numerical data , Medicare/statistics & numerical data , Telemedicine/statistics & numerical data , Confidence Intervals , Female , Humans , Logistic Models , Male , Propensity Score , Telemedicine/methods , Telemedicine/trends , Texas , Time Factors , United States
4.
J Prim Care Community Health ; 2(3): 153-6, 2011 Jul 01.
Article in English | MEDLINE | ID: mdl-23804794

ABSTRACT

Diabetes is one of the leading causes of death and disability in the United States, and hospitalization rates related to this health condition are high and costly to the United States health care system. The purpose of this study was to examine the effect of an integrated, clinician-focused telehealth monitoring system on the probability of hospitalization for home health care patients with diabetes. The study included 2009 data from 699 Medicare beneficiaries receiving home health services in Texas and Louisiana. Propensity score matching, logistic regression, and post-estimation parameter simulation were used to assess how telehealth affects the probability of hospitalization during the first 30 days of home health care. The 30-day hospitalization probability for telehealth and non-telehealth patients was 7% and 19%, respectively. Patients in the telehealth group had a 12 (95% confidence interval = 4.2-20.3) percentage point-lower probability of hospitalization within the first 30 days of home health care than non-telehealth matched patients. The results suggest that telehealth monitoring systems that integrate skilled clinicians with critical care experience can lead to substantially lower hospitalization rates during the first 30 days of home health care, large cost savings, and more effective home health management of patients with diabetes.

5.
J Clin Microbiol ; 46(5): 1588-95, 2008 May.
Article in English | MEDLINE | ID: mdl-18322061

ABSTRACT

Serodiagnosis of human immunodeficiency virus (HIV) infection in the United States has traditionally relied on a sequential two-test algorithm: an initial screen with an enzyme immunoassay (EIA) and reflex testing of EIA-reactive specimens with a more specific supplemental test such as Western blotting or immunofluorescence. The supplemental tests are tedious, subjective, and expensive. In addition, there have been major improvements in the performance and accuracy of the EIA tests as well as the introduction of rapid serologic tests (RT) and HIV nucleic acid amplification tests (NAAT). Related to these improvements is the possibility that alternative algorithms using combinations of currently approved HIV tests may function as well as if not better than the current algorithm, with more flexibility, improved accuracy, and lower cost. To this end, we evaluated the performance of 12 currently licensed tests and 1 in-house HIV test (6 EIA, 4 RT, and 3 NAAT) on panels of plasma samples from HIV-infected (n = 621 HIV type 1 [HIV-1] and 34 HIV-2) and uninfected (n = 513) people and of sequential specimens from people early in seroconversion (183 specimens from 15 patients). Test combinations were analyzed in two dual-test (sensitivity-optimized and specificity-optimized) algorithms and in a three-test (tie-breaking) algorithm, and performance was compared to the conventional algorithm. The results indicate that alternative algorithm strategies with currently licensed tests compare favorably with the conventional algorithm in detecting and confirming established HIV infection. Furthermore, there was a lower frequency of discordant or indeterminate results that require follow-up testing, and there was improved detection of early infection.


Subject(s)
Algorithms , HIV Infections/diagnosis , HIV/genetics , HIV/immunology , Immunoassay/methods , Nucleic Acid Amplification Techniques/methods , Antibodies, Viral/blood , Humans , Plasma/immunology , Plasma/virology , RNA, Viral/blood , Sensitivity and Specificity , United States
6.
Nature ; 436(7050): 529-33, 2005 Jul 28.
Article in English | MEDLINE | ID: mdl-16049482

ABSTRACT

The measurement of phase in coherent electron systems--that is, 'mesoscopic' systems such as quantum dots--can yield information about fundamental transport properties that is not readily apparent from conductance measurements. Phase measurements on relatively large quantum dots recently revealed that the phase evolution for electrons traversing the dots exhibits a 'universal' behaviour, independent of dot size, shape, and electron occupancy. Specifically, for quantum dots in the Coulomb blockade regime, the transmission phase increases monotonically by pi throughout each conductance peak; in the conductance valleys, the phase returns sharply to its starting value. The expected mesoscopic features in the phase evolution--related to the dot's shape, spin degeneracy or to exchange effects--have not been observed, and there is at present no satisfactory explanation for the observed universality in phase behaviour. Here we report the results of phase measurements on a series of small quantum dots, having occupancies of between only 1-20 electrons, where the phase behaviour for electron transmission should in principle be easier to interpret. In contrast to the universal behaviour observed thus far only in the larger dots, we see clear mesoscopic features in the phase measurements when the dot occupancy is less than approximately 10 electrons. As the occupancy increases, the manner of phase evolution changes and universal behaviour is recovered for some 14 electrons or more. The identification of a transition from the expected mesoscopic behaviour to universal phase evolution should help to direct and constrain theoretical models for the latter.

7.
J Clin Microbiol ; 42(11): 5161-9, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15528710

ABSTRACT

Infections with human immunodeficiency virus types 1 and 2 (HIV-1 and HIV-2, respectively) are zoonotic infections. In Africa, the potential exists for additional cross-species transmissions from at least 33 different species of simian immunodeficiency virus (SIV)-infected nonhuman primates (NHPs) through hunting and butchering of these animals for food. Here we describe a highly sensitive and specific enzyme immunoassay (EIA) with chemically modified, multiple antigenic peptides (MAPs) developed for the detection and discrimination of antibodies to SIV genetic lineages. The SIV EIA was developed by using a comprehensive array of MAPs covering two envelope gene regions from all of the SIV lineages for which env sequences were available. Assay sensitivity was evaluated by using 63 plasma or serum samples obtained from primates naturally or experimentally infected with SIVs from 10 genetic lineages. Assay specificity was determined by using 97 known SIV-negative plasma specimens from these same species. Also used in the evaluations were 369 human samples: 198 HIV seronegative, 170 HIV-1 and/or HIV-2 seropositive, and 1 from a human SIVsm infection. Overall assay sensitivity and specificity were 100% with both immunodominant region (IDR) and V3 region MAPs. Although SIV env sequences from talapoin monkeys were not available for specific MAP inclusion, 5 (100%) of 5 SIVtal-infected samples were detected through cross-reactivity with other SIV IDR MAPs used in the assay. The one human SIVsm infection was identified. In conclusion, our SIV MAP EIA proved to be highly sensitive and specific for detecting SIV infections in NHPs and humans. As shown with SIV-infected talapoin monkeys, this assay has the potential to detect previously unidentified SIV strains and should be suitable for sentinel surveillance for potential new cross-species transmissions of SIVs to humans.


Subject(s)
Antigens, Viral/immunology , Immunoenzyme Techniques/methods , Peptides/immunology , Simian Acquired Immunodeficiency Syndrome/diagnosis , Simian Immunodeficiency Virus/immunology , Amino Acid Sequence , Animals , Antigens, Viral/chemistry , HIV Envelope Protein gp120/chemistry , HIV Envelope Protein gp120/immunology , HIV Seropositivity/diagnosis , Haplorhini , Humans , Immunodominant Epitopes/chemistry , Immunodominant Epitopes/immunology , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/immunology , Peptides/chemistry , Sensitivity and Specificity
8.
Phys Rev Lett ; 92(15): 156801, 2004 Apr 16.
Article in English | MEDLINE | ID: mdl-15169303

ABSTRACT

Kondo correlation in a spin polarized quantum dot (QD) results from the dynamical formation of a spin singlet between the dot's net spin and a Kondo cloud of electrons in the leads, leading to enhanced coherent transport through the QD. We demonstrate here significant dephasing of such transport by coupling the QD and its leads to potential fluctuations in a nearby "potential detector." The qualitative dephasing is similar to that of a QD in the Coulomb blockade regime in spite of the fact that the mechanism of transport is quite different. A much stronger than expected suppression of coherent transport is measured, suggesting that dephasing is induced mostly in the "Kondo cloud" of electrons within the leads and not in the QD.

9.
Int J STD AIDS ; 13(8): 554-8, 2002 Aug.
Article in English | MEDLINE | ID: mdl-12194739

ABSTRACT

Resistance testing for treatment-naïve, recently HIV-infected persons is not currently recommended; its clinical value will depend on the prevalence of resistance-associated mutations among recently infected persons. To estimate this prevalence, specimens were collected during 1997-1999 in Seattle and Los Angeles from drug-naïve, recently HIV-infected persons. HIV-1 protease and reverse transcriptase (RT) RNA sequences were amplified from plasma by RT-polymerase chain reaction (RT-PCR), sequenced, and analysed. Of 69 patients, five (7%) had resistance-associated mutations: three (4%) had primary mutations associated with resistance to nucleoside reverse transcriptase inhibitors (NRTI) or non-nucleoside-RTIs, and three patients (4%) had secondary NRTI mutations. No primary mutation associated with resistance to protease inhibitors was observed. Mean age of the five persons with resistance-associated mutations (38 years) was higher than that of the 64 persons without resistance-associated mutations (31 years, P=0.04). The findings suggest that the prevalence of resistance-associated mutations among persons recently infected with HIV in these cities is low.


Subject(s)
HIV Infections/virology , HIV Protease Inhibitors/pharmacology , HIV-1/drug effects , Reverse Transcriptase Inhibitors/pharmacology , Adolescent , Adult , Aged , Drug Resistance, Microbial/genetics , Female , HIV Infections/drug therapy , HIV Protease/genetics , HIV Protease Inhibitors/therapeutic use , HIV Reverse Transcriptase/genetics , HIV-1/genetics , Humans , Los Angeles/epidemiology , Male , Middle Aged , Mutation , Prevalence , Reverse Transcriptase Inhibitors/therapeutic use , Reverse Transcriptase Polymerase Chain Reaction , Washington/epidemiology
10.
Vaccine ; 20(16): 2131-9, 2002 May 15.
Article in English | MEDLINE | ID: mdl-11972982

ABSTRACT

We conducted a national molecular epidemiologic survey of HIV-1 strains in Nigeria to determine the most prevalent subtype(s) for use in developing candidate vaccines. A total of 230 HIV-1-positive blood samples collected from 34 of the 36 Nigerian states were analyzed by our modified env gp41-based heteroduplex mobility assay (HMA) and/or gp41 sequencing and analysis. Overall, 103 (44.8%) were subtype A, 125 (54.3%) were subtype G, one (0.4%) was subtype C, and one (0.4%) was subtype J, and one (0.4%) was unclassifiable. To further characterize Nigerian viruses to aid in strain selection for candidate vaccines, one gp41 subtype G and five gp41 subtype A strains were selected for full envelope sequencing. The one subtype G sequence had consistent phylogenies throughout gp160, using programs to detect recombination. However, all five sequences that were primarily subtype A in gp41 were found to be recombinant viruses. Two of the five (40%) were A/G/J mosaics with common breakpoints. The remaining three gp160 recombinants all had their own unique break points: two A/? and one A/?/G, however, all five had the majority of their mosaic breakpoints occurring in gp41. None of the five were consistent with the circulating recombinant form (CRF)02_AG strain previously reported to be prevalent in West Africa. In conclusion, we showed a clear dominance and widespread distribution of gp41 subtypes A and G in fairly equal proportions, suggesting that vaccines designed for use in this geographic locale should incorporate the gene(s) of both subtypes. However, appreciating the magnitude of diversity of HIV-1 strains in Nigeria may require sequencing and analysis of longer gene regions for the identification of prevalent or emerging CRFs.


Subject(s)
AIDS Vaccines/immunology , HIV-1/classification , Amino Acid Sequence , Clinical Trials as Topic , HIV Envelope Protein gp160/chemistry , HIV Envelope Protein gp160/genetics , HIV Envelope Protein gp160/immunology , HIV Envelope Protein gp41/chemistry , HIV Envelope Protein gp41/genetics , HIV Envelope Protein gp41/immunology , HIV-1/genetics , HIV-1/immunology , Humans , Nigeria , Phylogeny , Recombination, Genetic
11.
J Mol Evol ; 53(1): 55-62, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11683323

ABSTRACT

Phylogenetic analyses frequently rely on models of sequence evolution that detail nucleotide substitution rates, nucleotide frequencies, and site-to-site rate heterogeneity. These models can influence hypothesis testing and can affect the accuracy of phylogenetic inferences. Maximum likelihood methods of simultaneously constructing phylogenetic tree topologies and estimating model parameters are computationally intensive, and are not feasible for sample sizes of 25 or greater using personal computers. Techniques that initially construct a tree topology and then use this non-maximized topology to estimate ML substitution rates, however, can quickly arrive at a model of sequence evolution. The accuracy of this two-step estimation technique was tested using simulated data sets with known model parameters. The results showed that for a star-like topology, as is often seen in human immunodeficiency virus type 1 (HIV-1) subtype B sequences, a random starting topology could produce nucleotide substitution rates that were not statistically different than the true rates. Samples were isolated from 100 HIV-1 subtype B infected individuals from the United States and a 620 nt region of the env gene was sequenced for each sample. The sequence data were used to obtain a substitution model of sequence evolution specific for HIV-1 subtype B env by estimating nucleotide substitution rates and the site-to-site heterogeneity in 100 individuals from the United States. The method of estimating the model should provide users of large data sets with a way to quickly compute a model of sequence evolution, while the nucleotide substitution model we identified should prove useful in the phylogenetic analysis of HIV-1 subtype B env sequences.


Subject(s)
Evolution, Molecular , HIV Envelope Protein gp120/genetics , HIV-1/genetics , Models, Genetic , Genes, Viral , HIV Infections/genetics , HIV-1/classification , Humans , Likelihood Functions , Phylogeny
12.
Mem Cognit ; 29(4): 587-97, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11504007

ABSTRACT

It is well known that people do not always make normative use of information about relative frequencies of categories when making categorical judgments. The "inverse base rate" effect (Medin & Edelson, 1988) is a typical example of this: Subjects violate normative reasoning principles by assigning certain ambiguous stimuli as belonging to the less frequent of two categories, rather than to the more common category. This effect has been explained as being due to the shifting of attention from shared stimulus features to distinctive features during learning. When stimuli are defined by values along continuous dimensions, rather than by the presence and absence of features, then attention could shift between dimensions or between values, or both. In three experiments, base rate differences were used to determine the way in which attention is shifted during learning about stimuli with continuously valued dimensions. Simulation modeling shows that the results are consistent with the movement of attention both between and within stimulus dimensions.


Subject(s)
Attention , Choice Behavior , Cognition , Judgment , Adult , Female , Humans , Male , Models, Psychological
13.
J Clin Microbiol ; 39(6): 2110-4, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11376043

ABSTRACT

The gp120 region of the human immunodeficiency virus type 1 (HIV-1) envelope (env) gene exhibits a high level of genetic heterogeneity across the group M subtypes. The heteroduplex mobility assay (HMA) has successfully been used to assign subtype classifications, but C2V5 primers often fail to amplify African strains. We developed an env gp41-based HMA for which the target sequence is amplified with highly conserved gp41 primers, known to efficiently amplify nucleic acids from HIV-1 group M, N, and O viruses. By using gp41 from a new panel of reference strains, the subtype assignments made by our modified HMA were concordant with those obtained by sequencing and phylogenetic analysis of 34 field strains from 10 countries representing subtypes A to G. Testing of field strains from Nigeria further demonstrated the utility of this modified assay. Of 28 samples, all could be amplified with gp41 primers but only 17 (60.7%) could be amplified with the standard C2V5 primers. Therefore, gp41-based HMA can be a useful tool for the rapid monitoring of prevalent subtypes in countries with divergent strains of circulating HIV-1.


Subject(s)
DNA, Viral/analysis , HIV Envelope Protein gp41/genetics , HIV Infections/virology , HIV-1/classification , Heteroduplex Analysis/methods , DNA, Viral/genetics , Genes, Viral , HIV-1/genetics , Humans , Phylogeny , Sequence Analysis, DNA , Time Factors
14.
AIDS Res Hum Retroviruses ; 17(2): 161-8, 2001 Jan 20.
Article in English | MEDLINE | ID: mdl-11177395

ABSTRACT

Among the major circulating HIV-1 subtypes, subtype C is the most prevalent. To generate full-length subtype C clones and sequences, we selected 13 primary (PBMC-derived) isolates from Zambia, India, Tanzania, South Africa, Brazil, and China, which were identified as subtype C by partial sequence analysis. Near full-length viral genomes were amplified by using a long PCR technique, sequenced in their entirety, and phylogenetically analyzed. Amino acid sequence analysis revealed 10.2, 6.3, and 17.3% diversity in predicted Gag, Pol, and Env protein sequences. Ten of 13 viruses were nonmosaic subtype C genomes, while all three isolates from China represented B/C recombinants. One of them was composed primarily of subtype C sequences with three small subtype B portions in gag, pol, and nef genes. Two others exhibited these same mosaic regions, but contained two additional subtype B portions at the gag/pol overlap and in the accessory gene region, suggesting ongoing B/C recombination in China. All subtype C genomes contained a prematurely truncated second exon of rev, but other previously proposed subtype C signatures, including three potential NF-kappa B-binding sites in the viral promoter-enhancer regions, were found in only a subset of these genomes.


Subject(s)
Genome, Viral , HIV Infections/virology , HIV-1/genetics , Adult , Base Sequence , Brazil , China , Female , Gene Products, env , Gene Products, gag/genetics , Gene Products, pol/genetics , Gene Products, rev , HIV Long Terminal Repeat/genetics , HIV-1/classification , Humans , India , Male , Middle Aged , Molecular Sequence Data , Phylogeny , Sequence Alignment , South Africa , Tanzania , rev Gene Products, Human Immunodeficiency Virus
15.
J Acquir Immune Defic Syndr ; 26(1): 93-102, 2001 Jan 01.
Article in English | MEDLINE | ID: mdl-11176273

ABSTRACT

Plasma viral load from 71 HIV-1-infected neonates was measured by using Amp-RT, an ultrasensitive quantitative reverse transcriptase (RT) assay and by nucleic acid sequence-based amplification (NASBA), an RNA-based quantitative assay. Results were then compared with those obtained from detection of proviral DNA in peripheral blood mononuclear cells (PBMCs) by polymerase chain reaction (PCR) using Turnbull analysis. At 5 days of life, 50% of neonates were positive by Amp-RT, 30% were NASBA positive, and 20% were DNA-PCR positive. Through the first 12 days of life, Amp-RT was more sensitive than either NASBA or DNA-PCR in detecting HIV-1 infection. Amp-RT values correlated well with NASBA RNA values, with an overall Pearson's r = 0.63 (95% confidence interval [CI], 0.40-0.78). In proportional hazards analysis of infants aged 14 to 61 days (N = 31), a one-log increase in RNA-based viral load was associated with a > fivefold risk of disease progression when using the U.S. Centers for Disease Control and Prevention (CDC) clinical Category C (CDC-C) or death as an endpoint (p =.014). Kaplan-Meier analysis of these data found that RNA viral loads were able to predict disease progression using CDC-C/death as an endpoint (p = .013). Early quantitative viral load measurements may assist clinicians in diagnosing HIV-1 infection, stratifying risk of disease progression, and implementing a treatment plan using highly active antiretroviral therapy for infants within the first few weeks of life.


Subject(s)
DNA, Viral/blood , HIV Infections/congenital , HIV Infections/diagnosis , HIV Reverse Transcriptase/blood , Infant, Newborn, Diseases/diagnosis , RNA, Viral/blood , Black or African American , Anti-HIV Agents/therapeutic use , Antiretroviral Therapy, Highly Active , Birth Weight , Centers for Disease Control and Prevention, U.S. , Demography , Disease Progression , Female , HIV Infections/blood , HIV Infections/drug therapy , HIV Infections/virology , HIV Reverse Transcriptase/metabolism , HIV-1/enzymology , HIV-1/genetics , HIV-1/isolation & purification , HIV-1/physiology , Humans , Infant , Infant, Newborn , Infant, Newborn, Diseases/blood , Infant, Newborn, Diseases/drug therapy , Infant, Newborn, Diseases/virology , Infant, Premature , Male , Polymerase Chain Reaction , Prognosis , Proportional Hazards Models , Sensitivity and Specificity , Survival Rate , United States , Viral Load
16.
JAMA ; 284(2): 210-4, 2000 Jul 12.
Article in English | MEDLINE | ID: mdl-10889595

ABSTRACT

CONTEXT: Current screening practices for blood donations have been successful in reducing human immunodeficiency virus (HIV) transmission through receipt of contaminated blood products. However, HIV-infected blood donations made prior to seroconversion and before high levels of viral replication occur could test negative using both serologic antigen and antibody tests. Testing based on nucleic acid amplification (NAT) is being implemented to screen for HIV-infected blood donated during this period, yet the issue of single vs minipool donation screening remains unresolved. OBJECTIVES: To determine HIV-1 genetic linkage between virus in 2 HIV-1-infected recipients of blood components and virus in the donor, who was HIV antigen and antibody negative at the time of donation; to screen the blood donor's plasma with HIV NAT assays, including those currently proposed for use in US blood donation screening. DESIGN AND SETTING: Case study conducted in October 1997 involving the Communicable Disease Centre, Singapore General Hospital, and the Singapore Blood Transfusion Service, Singapore. SUBJECTS: The blood donor and the 2 recipients of donor platelets and red blood cells. MAIN OUTCOME MEASURES: Genetic analysis of the HIV-1 p17 coding region of gag and the C2V5 region of env to determine the genetic relatedness of virus from the donor and recipients; reactivity in quantitative and qualitative assays, and reactivity in donor screening HIV NAT assays in single donation and minipool screening contexts. RESULTS: Direct DNA sequencing demonstrated identical HIV-1 subtype E viral sequences in the donor and recipients. Based on comparisons of a qualitative and quantitative assay for HIV-1 RNA levels, a low level of viremia (range, 5-39 copies/mL in plasma) was estimated to be in the donor's undiluted blood at the time of donation. Additional testing using donor-screening NAT assays showed consistent detection of HIV RNA in the undiluted donor plasma whereas detection was inconsistent at the 1:16 and 1:24 dilution levels currently used in minipool screening of blood donations in the United States. CONCLUSIONS: Transmission of HIV from a blood donor to a platelet recipient and a red blood cell recipient occurred in the preseroconversion infectious window period. The viral load in the implicated donation was estimated to be less than 40 copies/mL of plasma. Current US minipool HIV NAT screening protocols may not be sufficiently sensitive to detect all infectious window-period donations. JAMA. 2000;284:210-214


Subject(s)
AIDS Serodiagnosis , Blood Donors , Blood Transfusion , HIV Seropositivity , HIV-1 , Viral Proteins , DNA, Viral/analysis , Erythrocyte Transfusion , False Negative Reactions , Gene Amplification , Gene Products, gag/genetics , Genes, env , HIV Antigens/genetics , HIV Infections/diagnosis , HIV Infections/transmission , HIV Infections/virology , HIV Seropositivity/diagnosis , HIV Seropositivity/transmission , HIV Seropositivity/virology , HIV-1/genetics , HIV-1/immunology , Humans , Platelet Transfusion , RNA, Viral/analysis , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA , Singapore , Viral Load , gag Gene Products, Human Immunodeficiency Virus
18.
J Acquir Immune Defic Syndr ; 23(1): 58-67, 2000 Jan 01.
Article in English | MEDLINE | ID: mdl-10708057

ABSTRACT

OBJECTIVES: To study the molecular epidemiology of HIV-1 strains found in Switzerland and to determine possible genetic linkages among strains sorted by risk group or geographic region. DESIGN: A cross-sectional, clinic-based survey of HIV-1 molecular sequences and linked patient history from Swiss people. METHODS: Specimens were collected from 215 HIV-1-infected people in HIV outpatient clinics of four tertiary referral centers (Lausanne, St. Gallen, Zurich, and Basel) between May and August 1996, mainly from homosexual men, injecting drug users (IDU), and heterosexually infected people. In addition, specimens collected between 1991 and 1995 in the HIV outpatient clinic at University of Geneva were included into this survey. These specimens were collected primarily for an ongoing, prospective cohort (Swiss HIV Cohort Study). Direct C2V3C3 sequences of the env gene were determined from 158 samples of peripheral blood mononuclear cells. Genetic data were analyzed with the available patient history on each specimen. RESULTS: As found in other previous studies in Europe, primarily subtype B viruses were identified, whereas seven (4%) of 158 were non-subtype B: one subtype D, four subtype A, and two subtype E. Five of seven non-B subtypes occurred in immigrants from African or Asian countries and all seven were found exclusively in individuals who had been infected by heterosexual contact. No significant clustering of strains within different study sites or risk groups was found. A silent mutation (LAI env 834) occurred significantly more often in IDU than in homosexual men (p<.001). CONCLUSIONS: Although the lack of significant clustering of strains by risk group or geographic region may result from early introduction of subtype B viruses in Switzerland, the strong association of a silent mutation with IDU suggests that, early in the epidemic, there was a unique founder virus among IDUs. The HIV epidemic in Switzerland is still predominantly caused by subtype B viruses.


Subject(s)
HIV Envelope Protein gp120/genetics , HIV Infections/epidemiology , HIV-1/genetics , Homosexuality , Mutation , Substance Abuse, Intravenous , Amino Acid Sequence , Cohort Studies , Genetic Variation , HIV-1/classification , Humans , Male , Molecular Epidemiology , Molecular Sequence Data , Peptide Fragments/genetics , Phylogeny , Risk Factors , Sequence Homology, Amino Acid , Switzerland/epidemiology
19.
J Infect Dis ; 181(2): 463-9, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10669327

ABSTRACT

A population-based surveillance registry was used to identify human immunodeficiency virus (HIV)-infected persons in the United States at increased risk for group O and group N infections (those born in or near African countries where group O infection has been reported). Of 155 eligible subjects, 37 gave samples. By phylogenetic and serologic analysis, 32 were infected with group M (16 with subtype A, 5 with B, 7 with C, and 1 each with subtypes D, F2, G, and recombinant A/J) and 2 with group O but none with group N virus. For 3, samples could not be typed by serology or amplified by polymerase chain reaction using group M-, O-, or N-specific primers. In the United States, group O HIV infection is uncommon; no case of group N infection was found. African-born persons may have HIV strains typical of their birth country. Ongoing subtype surveillance may allow early identification of novel or emerging HIV strains.


Subject(s)
Emigration and Immigration , HIV Infections/epidemiology , HIV-1/classification , Population Surveillance , Adult , Africa/ethnology , Female , HIV Envelope Protein gp41/genetics , HIV Infections/virology , Humans , Male , Phylogeny , Polymerase Chain Reaction/methods , Risk Factors , Sequence Analysis, DNA , Serotyping , United States/epidemiology
20.
Psychol Res ; 64(2): 105-16, 2000.
Article in English | MEDLINE | ID: mdl-11195304

ABSTRACT

Results of human category learning experiments, using stimulus dimensions with binary values, have implicated a rapidly acting mechanism of attention shifts. Theories of categorization desire that stimuli with binary, discrete and continuous valued dimensions should all be treated similarly. Theoretical analyses of attention shifting, however, have up to now only been developed for shifts between features, or shifts between entire dimensions, not shifts within dimensions. Here we present a model of how people learn to discriminate categories made up of stimuli with continuous-valued dimensions. The model uses rapid shifts in attention within stimulus dimensions to reduce errors during learning; the model generalizes J. K. Kruschke's (Psychological Review, 99, 22-44, 1992) ADIT model. In an experiment in category learning, subjects were trained to discriminate four bivariate normal distributions that are presented with differential base rates. The base-rate manipulation produces several qualitative effects, for which the model accounts very well. With attention shifting turned off, the model fails to account for some aspects of the data, suggesting that attentions shifts are an important mechanism in the model.


Subject(s)
Association , Attention , Discrimination Learning , Humans , Models, Psychological , Probability
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