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1.
Mikrobiologiia ; 83(1): 109-18, 2014.
Article in Russian | MEDLINE | ID: mdl-25436252

ABSTRACT

Methanotrophs closely related to psychrotolerant members of the genera Methylobacter and Methylocella were identified in cultures enriched at 10@C from landfill cover soil samples collected in the period from April to November. Mesophilic methanotrophs of the genera Methylobacter and Methylosinus were found in cultures enriched at 20 degrees C from the same cover soil samples. A thermotolerant methanotroph related to Methylocaldum gracile was identified in the culture enriched at 40 degrees C from a sample collected in May (the temperature of the cover soil was 11.5-12.5 degrees C). In addition to methanotrophs, methylobacteria of the genera Methylotenera and Methylovorus and members of the genera Verrucomicrobium, Pseudomonas, Pseudoxanthomonas, Dokdonella, Candidatus Protochlamydia, and Thiorhodospira were also identified in the enrichment cultures. A methanotroph closely related to the psychrotolerant species Methylobacter tundripaludum (98% sequence identity of 16S r-RNA genes with the type strain SV96(T)) was isolated in pure culture. The introduction of a mixture of the methanotrophic enrichments, grown at 15 degrees C, into the landfill cover soil resulted in a decrease in methane emission from the landfill surface in autumn (October, November). The inoculum used was demonstrated to contain methanotrophs closely related to Methylobacter tundripaludum SV96.


Subject(s)
Soil Microbiology , Waste Disposal Facilities , Ectothiorhodospiraceae/genetics , Ectothiorhodospiraceae/isolation & purification , Methane/metabolism , Methylococcaceae/isolation & purification , Methylophilaceae/genetics , Methylophilaceae/isolation & purification , Methylosinus/genetics , Methylosinus/isolation & purification , Phylogeny , Pseudomonas/genetics , Pseudomonas/isolation & purification , RNA, Ribosomal, 16S , Seasons , Temperature
2.
Mikrobiologiia ; 83(5): 615-25, 2014.
Article in Russian | MEDLINE | ID: mdl-25844473

ABSTRACT

The contribution of the major technologically important microbial groups (ammonium- and nitrite-oxidizing, phosphate-accumulating, foam-inducing, and anammox bacteria, as well as planctomycetes and methanogenic archaea) was characterized for the aeration tanks of the Moscow wastewater treatment facilities. FISH investigation revealed that aerobic sludges were eubacterial communities; the metabolically active archaea contributed insignificantly. Stage II nitrifying microorganisms and planctomycetes were significant constituents of the bacterial component of activated sludge, with Nitrobacter spp. being the dominant nitrifier. No metabolically active anammox bacteria were revealed in the sludge from aeration tanks. The sludge from the aeration tanks using different wastewater treatment technologies were found to differ in characteristics. Abundance of the nitrifying and phosphate-accumulating bacteria in the sludges generally correlated with microbial activity, in microcosms and with efficiency of nitrogen and phosphorus removal from wastewater. The highest microbial numbers and activity were found in the sludges of the tanks operating according to the technologies developed in the universities of Hanover and Cape Town. The activated sludge from the Novokur yanovo facilities, where abundant growth of filamentous bacteria resulted in foam formation, exhibited the lowest activity The group of foaming bacteria included Gordonia spp. and Acinetobacter spp., utilizing petroleum and motor oils, Sphaerotilus spp. utilizing unsaturated fatty acids, and Candidatus 'Microthrix parvicella'. Thus, the data on abundance and composition of metabolically active microorganisms obtained by FISH may be used for the technological control of wastewater treatment.


Subject(s)
Bacteria , Sewage/microbiology , Wastewater/microbiology , Water Microbiology , Water Purification , Bacteria/classification , Bacteria/isolation & purification , Bacteria/metabolism , Moscow
3.
Mikrobiologiia ; 75(6): 828-35, 2006.
Article in Russian | MEDLINE | ID: mdl-17205809

ABSTRACT

The biogeochemical and molecular biological study of the chemocline and sediments of saline meromictic lakes Shira and Shunet (Khakass Republic, Russia) was performed. A marked increase in the rates of sulfate reduction and methanogenesis was revealed at the medium depths of the chemocline. The rates of these processes in the bottom sediments decreased with depth. The numbers of Bacteria, Archaea, and of sulfate-reducing bacteria (SRB) were determined by fluorescence in situ hybridization with rRNA specific oligonucleotide probes labeled with horseradish peroxidase and subsequent tyramide signal amplification. In the chemocline, both the total microbial numbers and those of Bacteria were shown to increase with depth. The archaea and SRB were present in almost equal numbers. In the lake sediments, a drastic decrease in microbial numbers with depth was revealed. SRB were found to prevail in the upper sediment layer and archaea in the lower one. This finding correlates with the measured rates of sulfate reduction and methanogenesis.


Subject(s)
Archaea/isolation & purification , Bacteria/isolation & purification , Fresh Water/microbiology , Methane/biosynthesis , Sulfates/metabolism , Water Microbiology , Archaea/metabolism , Bacteria/metabolism , Fresh Water/chemistry , Geologic Sediments/microbiology , Oligonucleotide Probes , Primed In Situ Labeling , RNA, Bacterial , RNA, Ribosomal , Siberia
4.
Mikrobiologiia ; 74(5): 699-706, 2005.
Article in Russian | MEDLINE | ID: mdl-16315990

ABSTRACT

Methane oxidation in the cover soil of the Khmet'evo municipal landfill in Moscow oblast was investigated. Methane emission from the experimental parcel of the site was highly inhomogeneous. At a depth of 45-60 cm, the pore gas mainly consisted of CH4 (60-70%) and CO2 (30-40%). In the upper horizons of the cover soil, the concentration of these gases sharply decreased. Techniques for estimation of the methane-oxidizing activity in the cover soil of the landfill were tested. The rate of methane oxidation in the soil, the factor limiting methane emission from the surface of the site, correlated with the cell number of culturable methanotrophic bacteria. The method of indirect immunofluorescence revealed ten known species of methanotrophic bacteria in enrichment cultures obtained from samples of the cover soil. Our results also indicate the presence of unknown psychrotolerant methanotrophs that are active at the low temperatures characteristic of Moscow oblast.


Subject(s)
Methane/metabolism , Refuse Disposal , Soil/analysis , Cities , Colony Count, Microbial , Methylococcaceae/isolation & purification , Oxidation-Reduction , Soil Microbiology , Soil Pollutants
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