Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 562
Filter
1.
Nat Commun ; 15(1): 5153, 2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38886376

ABSTRACT

Despite decades of research, we still do not understand how spontaneous human seizures start and spread - especially at the level of neuronal microcircuits. In this study, we used laminar arrays of micro-electrodes to simultaneously record the local field potentials and multi-unit neural activities across the six layers of the neocortex during focal seizures in humans. We found that, within the ictal onset zone, the discharges generated during a seizure consisted of current sinks and sources only within the infra-granular and granular layers. Outside of the seizure onset zone, ictal discharges reflected current flow in the supra-granular layers. Interestingly, these patterns of current flow evolved during the course of the seizure - especially outside the seizure onset zone where superficial sinks and sources extended into the deeper layers. Based on these observations, a framework describing cortical-cortical dynamics of seizures is proposed with implications for seizure localization, surgical targeting, and neuromodulation techniques to block the generation and propagation of seizures.


Subject(s)
Electroencephalography , Neocortex , Seizures , Humans , Seizures/physiopathology , Neocortex/physiopathology , Neocortex/physiology , Male , Adult , Female , Young Adult , Cerebral Cortex/physiopathology , Cerebral Cortex/physiology , Microelectrodes , Neurons/physiology
2.
Cancer Cell ; 42(5): 732-735, 2024 May 13.
Article in English | MEDLINE | ID: mdl-38579722

ABSTRACT

Saliby et al. show that a machine learning approach can accurately classify clear cell renal cell carcinoma (RCC) into distinct molecular subtypes using transcriptomic data. When applied to tumors biospecimens from the JAVELIN Renal 101 (JR101) trial, a benefit is observed with immune checkpoint inhibitor (ICI)-based therapy across all molecular subtypes.


Subject(s)
Carcinoma, Renal Cell , Immune Checkpoint Inhibitors , Immunotherapy , Kidney Neoplasms , Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/immunology , Carcinoma, Renal Cell/therapy , Carcinoma, Renal Cell/drug therapy , Humans , Kidney Neoplasms/immunology , Kidney Neoplasms/genetics , Kidney Neoplasms/therapy , Kidney Neoplasms/drug therapy , Immunotherapy/methods , Immune Checkpoint Inhibitors/therapeutic use , Immune Checkpoint Inhibitors/pharmacology , Molecular Targeted Therapy/methods , Treatment Outcome , Machine Learning
4.
Sci Total Environ ; 918: 170578, 2024 Mar 25.
Article in English | MEDLINE | ID: mdl-38331281

ABSTRACT

Non-exhaust particulate emissions and road traffic noise will continue to constitute significant threats to the environment and human health during the 21st century. In the EU alone, >60 million adults are subjected to unhealthy levels of vehicle noise, while over 200,000 premature deaths are caused by chronic exposure to excessive concentrations of fine particles, with road traffic being a key source. Although these pollutants share common sources and can affect the same targets, studies have often treated their emissions separately. This study establishes both the phenomenological and mathematical relationships between tire/road noise (TRN) and rear-of-wheel particle (RoWP) emissions. Information from test track measurements, coupled with correlation-based models, enables linking TRN with RoWP emissions through variables such as vehicle speed and pavement properties, including macro-texture scales. A careful examination of the data reveals that pavement macro-texture acts as a crucible in which TRN and RoWP emissions are generated in an interrelated manner. However, at speeds over 70-80 km/h, the depletion of readily mobilizable RoWP fractions, followed by the emergence of refractory (hard-to-mobilize) circum-/super-micron RoWP fractions from resuspension (which accompanies the intensification of air-pumping TRN generation mechanisms), marks a loss of this interdependence. These results, supplemented by valuable insights into the particulate emission performance of pavements, serve to outline future air quality challenges and provide a basis for the simplified monitoring and control (e.g. through acoustic measurements) of RoWP emissions.

5.
Cancer Immunol Res ; 11(8): 1114-1124, 2023 08 03.
Article in English | MEDLINE | ID: mdl-37279009

ABSTRACT

Renal cell carcinoma (RCC) of variant histology comprises approximately 20% of kidney cancer diagnoses, yet the optimal therapy for these patients and the factors that impact immunotherapy response remain largely unknown. To better understand the determinants of immunotherapy response in this population, we characterized blood- and tissue-based immune markers for patients with variant histology RCC, or any RCC histology with sarcomatoid differentiation, enrolled in a phase II clinical trial of atezolizumab and bevacizumab. Baseline circulating (plasma) inflammatory cytokines were highly correlated with one another, forming an "inflammatory module" that was increased in International Metastatic RCC Database Consortium poor-risk patients and was associated with worse progression-free survival (PFS; P = 0.028). At baseline, an elevated circulating vascular endothelial growth factor A (VEGF-A) level was associated with a lack of response (P = 0.03) and worse PFS (P = 0.021). However, a larger increase in on-treatment levels of circulating VEGF-A was associated with clinical benefit (P = 0.01) and improved overall survival (P = 0.0058). Among peripheral immune cell populations, an on-treatment decrease in circulating PD-L1+ T cells was associated with improved outcomes, with a reduction in CD4+PD-L1+ [HR, 0.62; 95% confidence interval (CI), 0.49-0.91; P = 0.016] and CD8+PD-L1+ T cells (HR, 0.59; 95% CI, 0.39-0.87; P = 0.009) correlated with improved PFS. Within the tumor itself, a higher percentage of terminally exhausted (PD-1+ and either TIM-3+ or LAG-3+) CD8+ T cells was associated with worse PFS (P = 0.028). Overall, these findings support the value of tumor and blood-based immune assessments in determining therapeutic benefit for patients with RCC receiving atezolizumab plus bevacizumab and provide a foundation for future biomarker studies for patients with variant histology RCC receiving immunotherapy-based combinations.


Subject(s)
Carcinoma, Renal Cell , Kidney Neoplasms , Humans , Carcinoma, Renal Cell/pathology , Bevacizumab/therapeutic use , Vascular Endothelial Growth Factor A , B7-H1 Antigen , Kidney Neoplasms/drug therapy , Kidney Neoplasms/pathology
6.
Nat Commun ; 14(1): 1851, 2023 04 03.
Article in English | MEDLINE | ID: mdl-37012232

ABSTRACT

Serial multi-omic analysis of proteome, phosphoproteome, and acetylome provides insights into changes in protein expression, cell signaling, cross-talk and epigenetic pathways involved in disease pathology and treatment. However, ubiquitylome and HLA peptidome data collection used to understand protein degradation and antigen presentation have not together been serialized, and instead require separate samples for parallel processing using distinct protocols. Here we present MONTE, a highly sensitive multi-omic native tissue enrichment workflow, that enables serial, deep-scale analysis of HLA-I and HLA-II immunopeptidome, ubiquitylome, proteome, phosphoproteome, and acetylome from the same tissue sample. We demonstrate that the depth of coverage and quantitative precision of each 'ome is not compromised by serialization, and the addition of HLA immunopeptidomics enables the identification of peptides derived from cancer/testis antigens and patient specific neoantigens. We evaluate the technical feasibility of the MONTE workflow using a small cohort of patient lung adenocarcinoma tumors.


Subject(s)
Lung Neoplasms , Proteome , Male , Humans , Proteome/metabolism , Workflow , Peptides , Proteomics/methods
7.
Case Rep Womens Health ; 33: e00383, 2022 Jan.
Article in English | MEDLINE | ID: mdl-35127457

ABSTRACT

BACKGROUND: Intravesical mesh erosion is an uncommon late complication of placement of a synthetic mid-urethral sling (MUS) for the treatment of stress urinary incontinence, and only a few cases have been reported. Optimal management remains controversial, though there is a tendency toward surgical removal through a variety of routes. However, surgical removal comes with its own risks and is not necessarily associated with an improvement in symptoms. We, herein present the first case of a conservatively managed intravesical mesh erosion following MUS placement. CASE: Nine years after insertion of a tension-free vaginal tape (TVT), a patient presented with persistent lower abdominal pain and dysuria. Flexible cystoscopy demonstrated an erosion of the tape through the bladder wall. The patient declined surgical intervention at the time. Therefore, she was commenced on regular methenamine hippurate and vaginal oestrogen, and kept under surveillance with regular cystoscopies. Her symptoms responded to this treatment and 6 years later remained well controlled on this regime. CONCLUSION: This case demonstrates that conservative management may be a safe and appropriate option for patients who decline surgical excision of mesh erosion.

9.
Cell ; 184(16): 4348-4371.e40, 2021 08 05.
Article in English | MEDLINE | ID: mdl-34358469

ABSTRACT

Lung squamous cell carcinoma (LSCC) remains a leading cause of cancer death with few therapeutic options. We characterized the proteogenomic landscape of LSCC, providing a deeper exposition of LSCC biology with potential therapeutic implications. We identify NSD3 as an alternative driver in FGFR1-amplified tumors and low-p63 tumors overexpressing the therapeutic target survivin. SOX2 is considered undruggable, but our analyses provide rationale for exploring chromatin modifiers such as LSD1 and EZH2 to target SOX2-overexpressing tumors. Our data support complex regulation of metabolic pathways by crosstalk between post-translational modifications including ubiquitylation. Numerous immune-related proteogenomic observations suggest directions for further investigation. Proteogenomic dissection of CDKN2A mutations argue for more nuanced assessment of RB1 protein expression and phosphorylation before declaring CDK4/6 inhibition unsuccessful. Finally, triangulation between LSCC, LUAD, and HNSCC identified both unique and common therapeutic vulnerabilities. These observations and proteogenomics data resources may guide research into the biology and treatment of LSCC.


Subject(s)
Carcinoma, Squamous Cell/genetics , Lung Neoplasms/genetics , Proteogenomics , Acetylation , Adult , Aged , Aged, 80 and over , Cluster Analysis , Cyclin-Dependent Kinase 4/genetics , Cyclin-Dependent Kinase 6/genetics , Epithelial-Mesenchymal Transition/genetics , Female , Gene Expression Regulation, Neoplastic , Humans , Male , Middle Aged , Mutation/genetics , Neoplasm Proteins/metabolism , Phosphorylation , Protein Binding , Receptor Tyrosine Kinase-like Orphan Receptors/metabolism , Receptors, Platelet-Derived Growth Factor/metabolism , Signal Transduction , Ubiquitination
11.
J Med Imaging Radiat Oncol ; 65(6): 737-739, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33547764

ABSTRACT

Case report of an atypical location of ACP. ACP should be considered even in small joints with characteristic imaging even with trauma involvement.


Subject(s)
Calcinosis , Periarthritis , Calcinosis/diagnostic imaging , Humans
12.
Clin Exp Dermatol ; 46(1): 157-161, 2021 Jan.
Article in English | MEDLINE | ID: mdl-32803784

ABSTRACT

Atopic dermatitis (AD) is one of the most common inflammatory skin diseases in the developed world, affecting 1-3% of the adult population in Europe. This inflammatory disease can have a marked impact on affected individuals, leading to significant impairment in physical wellbeing and quality of life (QoL). The aim of this study was to investigate the psychosocial impact and financial burden of AD on patients in Ireland. To increase our understanding of the psychosocial and financial aspects of AD disease burden in the Irish population, an online survey was designed. The survey was launched by the Irish Skin Foundation, and included questions focusing on disease severity, disease control, psychosocial impact, interrupted sleep, missed work and school days, and financial cost. The survey showed that the impact of AD on QoL was profound. The survey demonstrated that 85% of adults described interrupted sleep, 70% reported social anxiety, 65% avoid exercise and sports, 52% avoid social activities, 52% avoid sexual intimacy and 43% feel they are depressed as a result of their AD. Approximately one-quarter of those surveyed can spend up to €2300 annually on over-the-counter, prescription and alternative treatments. This study has shown the significant impact AD has on patients living in Ireland. It also highlights that out-of-pocket costs for patients is higher compared with previous studies across European countries.


Subject(s)
Cost of Illness , Dermatitis, Atopic/psychology , Health Expenditures/statistics & numerical data , Adolescent , Adult , Child , Child, Preschool , Dermatitis, Atopic/economics , Female , Health Surveys , Humans , Ireland , Male , Middle Aged , Patient Acuity , Quality of Life
13.
Case Rep Hematol ; 2020: 8869335, 2020.
Article in English | MEDLINE | ID: mdl-33178467

ABSTRACT

EF Bart's disease is a rare form of nontransfusion-dependant thalassemia (NTDT) due to the coinheritance of homozygous hemoglobin E (ß E/ß E) genotype with hemoglobin H disease. These individuals are routinely found to have thalassemia intermedia with moderate anemia, increased hemoglobin Bart's and hemoglobin F on electrophoresis. The contribution of hemoglobin F-inducing polymorphisms in this disease has not been described previously. Here, we describe the hematological profile in a young child with coinheritance of Gγ-XmnI and Aγ-globin gene polymorphisms in EF Bart's disease. Interestingly, in this rare form of NTDT, normal HbF and elevated HbA2 were noted.

14.
Cell ; 182(1): 200-225.e35, 2020 07 09.
Article in English | MEDLINE | ID: mdl-32649874

ABSTRACT

To explore the biology of lung adenocarcinoma (LUAD) and identify new therapeutic opportunities, we performed comprehensive proteogenomic characterization of 110 tumors and 101 matched normal adjacent tissues (NATs) incorporating genomics, epigenomics, deep-scale proteomics, phosphoproteomics, and acetylproteomics. Multi-omics clustering revealed four subgroups defined by key driver mutations, country, and gender. Proteomic and phosphoproteomic data illuminated biology downstream of copy number aberrations, somatic mutations, and fusions and identified therapeutic vulnerabilities associated with driver events involving KRAS, EGFR, and ALK. Immune subtyping revealed a complex landscape, reinforced the association of STK11 with immune-cold behavior, and underscored a potential immunosuppressive role of neutrophil degranulation. Smoking-associated LUADs showed correlation with other environmental exposure signatures and a field effect in NATs. Matched NATs allowed identification of differentially expressed proteins with potential diagnostic and therapeutic utility. This proteogenomics dataset represents a unique public resource for researchers and clinicians seeking to better understand and treat lung adenocarcinomas.


Subject(s)
Adenocarcinoma of Lung/drug therapy , Adenocarcinoma of Lung/genetics , Lung Neoplasms/drug therapy , Lung Neoplasms/genetics , Proteogenomics , Adenocarcinoma of Lung/immunology , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/metabolism , Carcinogenesis/genetics , Carcinogenesis/pathology , DNA Copy Number Variations/genetics , DNA Methylation/genetics , Female , Humans , Lung Neoplasms/immunology , Male , Middle Aged , Mutation/genetics , Oncogene Proteins, Fusion , Phenotype , Phosphoproteins/metabolism , Proteome/metabolism
15.
Mol Pharm ; 17(7): 2570-2584, 2020 07 06.
Article in English | MEDLINE | ID: mdl-32484677

ABSTRACT

The current therapy for treating neovascular age-related macular degeneration requires monthly intravitreal injection of angiogenesis inhibitors such as bevacizumab or ranibizumab via a 31-gauge needle to inhibit choroidal neovascularization. However, repeated intravitreal injections are associated with poor patient compliance and potential side effects. Microparticle-based injectable devices have shown great promise to address this issue by sustained delivery of protein therapeutics, but critical barriers remain, including limited loading capacity and steady long-term release without compromising the anti-angiogenic activity of drugs. Addressing these challenges, we developed a unique method for synthesizing biodegradable polymer-based core-shell microparticles with sizes around 10 µm, high physical integrity, and uniform size. Subsequent electrostatic and physical interactions to control protein diffusion were designed for the core-shell microparticles to effectively increase the capacity of drug loading to 25%, reduce burst release by almost 30%, and extend the period of drug release from 3 to 6 months. Remarkably, the microparticles enabled a longer-term drug administration and maintained high drug potency up to 6 months in vitro, representing significant advancement compared to conventional microparticle-based delivery platforms or currently commercialized devices. Additionally, the microparticles presented minimal toxicity to human retinal cells in vitro with over 90% cell viability, and they also exhibited good injection feasibility through 31-gauge needles in an ex vivo porcine eye model. These results warrant further studies to evaluate the clinical potential for treating posterior ophthalmic diseases as well as other conditions or injuries requiring long-term local drug administration.


Subject(s)
Angiogenesis Inhibitors/pharmacology , Bevacizumab/pharmacology , Chitosan/chemistry , Choroidal Neovascularization/drug therapy , Drug Delivery Systems/methods , Macular Degeneration/drug therapy , Microplastics/chemistry , Polyesters/chemistry , Angiogenesis Inhibitors/administration & dosage , Animals , Antibodies, Monoclonal, Humanized/therapeutic use , Bevacizumab/administration & dosage , Cell Line , Cell Survival/drug effects , Drug Liberation , Human Umbilical Vein Endothelial Cells , Humans , Intravitreal Injections , Microplastics/chemical synthesis , Microplastics/toxicity , Microscopy, Electron, Scanning , Microspheres , Particle Size , Retina/drug effects , Swine , Vascular Endothelial Growth Factor A/antagonists & inhibitors
17.
J Biomech ; 100: 109582, 2020 02 13.
Article in English | MEDLINE | ID: mdl-31902607

ABSTRACT

This study investigates whether the presence of accommodative tissues biomechanically influences the shape of the cornea and potentially drives corneal morphogenesis during embryonic ocular development. Porcine eyes were subjected to an internal pressure simulating intraocular pressure. Ocular geometry was evaluated using a corneal topographer and digital cameras before and after dissection of the accommodative tissues. A computational model of the porcine eye was constructed and loaded by an internal pressure representing intraocular pressure. Eye shape was evaluated in models with and without the ciliary body. The porcine model was generalized to the human model, simplified model, or embryonic model with different ocular tissue shapes, sizes, and stiffnesses. Experimental data showed that, even in the six-month-old pig eye, the average corneal radius of curvature increased after the removal of accommodative tissues compared to sham controls (p = 0.002). Computational results agreed with the experimental data and further suggested that the change in corneal radius is greater when the tissue stiffness is low and the intraocular pressure is high, regardless of the geometry and size of the eye components. Using a combined in vitro and in silico approach, this study explores the biomechanical influence of the accommodative tissues and related loads on the cornea and offers additional factors that might influence the shape of the cornea.


Subject(s)
Accommodation, Ocular , Cornea/cytology , Cornea/growth & development , Animals , Biomechanical Phenomena , Cornea/physiology , Humans , Intraocular Pressure , Morphogenesis , Swine
18.
Diabet Med ; 37(2): 187-193, 2020 02.
Article in English | MEDLINE | ID: mdl-31148227

ABSTRACT

We review current applications of Big Data in diabetes care and consider the future potential by carrying out a scoping study of the academic literature on Big Data and diabetes care. Healthcare data are being produced at ever-increasing rates, and this information has the potential to transform the provision of diabetes care. Big Data is beginning to have an impact on diabetes care through data research. The use of Big Data for routine clinical care is still a future application. Vast amounts of healthcare data are already being produced, and the key is harnessing these to produce actionable insights. Considerable development work is required to achieve these goals.


Subject(s)
Big Data , Biomedical Research , Diabetes Mellitus , Cost Savings , Genomics , Humans , Image Processing, Computer-Assisted , Machine Learning , Precision Medicine , Routinely Collected Health Data
19.
Macromol Biosci ; 20(2): e1900305, 2020 02.
Article in English | MEDLINE | ID: mdl-31846211

ABSTRACT

Current experimental vitreous substitutes only replace the physical functions of the natural vitreous humor. Removal of the native vitreous disrupts oxygen homeostasis in the eye, causing oxidative damage to the lens that likely results in cataract formation. Neither current clinical treatments nor other experimental vitreous substitutes consider the problem of oxidative stress after vitrectomy. To address this problem, biomimetic hydrogels are prepared by free radical polymerization of poly(ethylene glycol) methacrylate and poly(ethylene glycol) diacrylate. These hydrogels have similar mechanical and optical properties to the vitreous. The hydrogels are injectable through small-gauge needles and demonstrate in vitro biocompatibility with human retinal and lens epithelial cells. The hydrogels and added vitamin C, an antioxidant, show a synergistic effect in protecting ocular cells against reactive oxygen species, which fulfills a chemical function of the natural vitreous. These hydrogels have the potential to prevent post-vitrectomy cataract formation and reduce the cost of additional surgeries.


Subject(s)
Antioxidants , Hydrogels , Lens, Crystalline/metabolism , Materials Testing , Retina/metabolism , Vitreous Body , Animals , Antioxidants/chemistry , Antioxidants/therapeutic use , Humans , Hydrogels/chemistry , Hydrogels/therapeutic use
SELECTION OF CITATIONS
SEARCH DETAIL
...