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1.
Integr Biol (Camb) ; 11(7): 315-329, 2019 11 26.
Article in English | MEDLINE | ID: mdl-31712825

ABSTRACT

Commensal bacteria must colonize host mucosal surfaces to exert health-promoting properties, and bind to gastrointestinal tract (GIT) mucins via their cell surface adhesins. Considerable effort has been directed towards discovery of pathogen adhesins and their ligands to develop anti-infective strategies; however, little is known about the lectin-like adhesins and associated carbohydrate ligands in commensals. In this study, an in silico approach was used to detect surface exposed adhesins in the human commensal Lactobacillus paracasei subsp. paracasei, a promising probiotic commonly used in dairy product fermentation that presents anti-microbial activity. Of the 13 adhesin candidates, 3 sortase-dependent pili clusters were identified in this strain and expression of the adhesin candidate genes was confirmed in vitro. Mass spectrometry analysis confirmed the presence of surface adhesin elongation factor Tu and the chaperonin GroEL, but not pili expression. Whole cells were subsequently incubated on microarrays featuring a panel of GIT mucins from nine different mammalian species and two human-derived cell lines and a library of carbohydrate structures. Binding profiles were compared to those of two known pili-producing lactobacilli, L. johnsonii and L. rhamnosus and all Lactobacillus species displayed overlapping but distinct signatures, which may indicate different abilities for regiospecific GIT colonization. In addition, L. paracasei whole cells favoured binding to α-(2 â†’ 3)-linked sialic acid and α-(1 â†’ 2)-linked fucose-containing carbohydrate structures including blood groups A, B and O and Lewis antigens x, y and b. This study furthers our understanding of host-commensal cross-talk by identifying potential adhesins and specific GIT mucin and carbohydrate ligands and provides insight into the selection of colonization sites by commensals in the GIT.


Subject(s)
Adhesins, Bacterial/chemistry , Carbohydrates/chemistry , Gastrointestinal Microbiome , Glycomics/methods , Lacticaseibacillus paracasei , Animals , Bacterial Adhesion , Computer Simulation , Fucose/chemistry , Humans , Lactobacillus , Lactobacillus johnsonii , Lacticaseibacillus rhamnosus , Ligands , Molecular Probe Techniques , Probiotics , Protein Binding , RNA, Bacterial/isolation & purification , Surface Properties
2.
World J Gastroenterol ; 23(37): 6817-6832, 2017 Oct 07.
Article in English | MEDLINE | ID: mdl-29085225

ABSTRACT

AIM: To identify glycosylation-related genes in the HT29 derivative cell line, HT29-MTX-E12, showing differential expression on infection with Helicobacter pylori (H. pylori). METHODS: Polarised HT29-MTX-E12 cells were infected for 24 h with H. pylori strain 26695. After infection RNA was isolated from both infected and non-infected host cells. Sufficient infections were carried out to provide triplicate samples for microarray analysis and for qRT-PCR analysis. RNA was isolated and hybridised to Affymetrix arrays. Analysis of microarray data identified genes significantly differentially expressed upon infection. Genes were grouped into gene ontology functional categories. Selected genes associated with host glycan structure (glycosyltransferases, hydrolases, lectins, mucins) were validated by real-time qRT-PCR analysis. RESULTS: Infection of host cells was confirmed by the isolation of live bacteria after 24 h incubation and by PCR amplification of bacteria-specific genes from the host cell RNA. H. pylori do not survive incubation under the adopted culture conditions unless they associate with the adherent mucus layer of the host cell. Microarray analysis identified a total of 276 genes that were significantly differentially expressed (P < 0.05) upon H. pylori infection and where the fold change in expression was greater than 2. Six of these genes are involved in glycosylation-related processes. Real-time qRT-PCR demonstrated significant downregulation (1.8-fold, P < 0.05) of the mucin MUC20. REG4 was heavily expressed and significantly downregulated (3.1-fold, P < 0.05) upon infection. Gene ontology analysis was consistent with previous studies on H. pylori infection. CONCLUSION: Gene expression data suggest that infection with H. pylori causes a decrease in glycan synthesis, resulting in shorter and simpler glycan structures.


Subject(s)
Helicobacter Infections/pathology , Helicobacter pylori/physiology , Host-Pathogen Interactions , Mucins/metabolism , Pancreatitis-Associated Proteins/metabolism , Polysaccharides/metabolism , Down-Regulation , Gene Expression Profiling/methods , Gene Ontology , Glycosylation , HT29 Cells , Helicobacter Infections/microbiology , Helicobacter pylori/isolation & purification , Humans , Microarray Analysis
3.
Sci Rep ; 7(1): 6477, 2017 07 25.
Article in English | MEDLINE | ID: mdl-28743896

ABSTRACT

There is an urgent need for discovery of novel antimicrobials and carbohydrate-based anti-adhesive strategies are desirable as they may not promote resistance. Discovery of novel anti-adhesive molecules from natural product libraries will require the use of a high throughput screening platform. Avian egg white (EW) provides nutrition for the embryo and protects against infection, with glycosylation responsible for binding certain pathogens. In this study, a microarray platform of 78 species of avian EWs was developed and profiled for glycosylation using a lectin panel with a wide range of carbohydrate specificities. The dominating linkages of sialic acid in EWs were determined for the first time using the lectins MAA and SNA-I. EW glycosylation similarity among the different orders of birds did not strictly depend on phylogenetic relationship. The interactions of five strains of bacterial pathogens, including Escherichia coli, Staphylococcus aureus and Vibrio cholera, identified a number of EWs as potential anti-adhesives, with some as strain- or species-specific. Of the two bacterial toxins examined, shiga-like toxin 1 subunit B bound to ten EWs with similar glycosylation more intensely than pigeon EW. This study provides a unique platform for high throughput screening of natural products for specific glycosylation and pathogen interactions. This platform may provide a useful platform in the future for discovery of anti-adhesives targeted for strain and species specificity.


Subject(s)
Egg White , Food Microbiology , Glycoproteins/metabolism , High-Throughput Screening Assays/methods , Host-Pathogen Interactions/physiology , Agglutinins/chemistry , Agglutinins/metabolism , Animals , Bacterial Toxins/metabolism , Birds , Electrophoresis, Polyacrylamide Gel , Glycoproteins/analysis , Glycosylation , Maackia/chemistry , Phylogeny , Protein Array Analysis/methods , Sialic Acids/chemistry , Sialic Acids/metabolism
4.
Toxicon ; 103: 169-75, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26169671

ABSTRACT

Okadaic acid (OA) and its derivatives, DTX-1 and DTX-2, are marine biotoxins associated with diarrhetic shellfish poisoning. Routine monitoring of these toxins relies on the mouse bioassay. However, due to the technical unreliability and animal usage of this bioassay, there is always a need for convenient and reliable alternative assay methods. A panel of monoclonal antibodies against OA was generated and the most suitable was selected for biosensor-based assay development using surface plasmon resonance. The cross reactivity of the selected antibody with DTX-1 was found to be 73%, confirming the antibody suitability for both OA and DTX detection. The OA and derivative assay was designed as an inhibition assay covering the concentrations 1-75 ng/ml, with a sensitivity of 22.4 ng/ml. The assay was highly reproducible and preliminary validation showed no matrix interference from mussel extracts and good recovery of added standard in mussel extracts, with %CV of <9.3%. This assay could provide a useful and convenient screening tool for OA and its derivatives with a comprehensive extraction protocol for shellfish monitoring programmes.


Subject(s)
Antibody Affinity , Biological Assay/methods , Biosensing Techniques/methods , Immunoassay/methods , Okadaic Acid/analysis , Shellfish/analysis , Animals , Antibodies, Monoclonal/blood , Antibodies, Monoclonal/immunology , Bivalvia , Hydrogen-Ion Concentration , Marine Toxins/analysis , Mice , Mice, Inbred BALB C , Pyrans/analysis , Sensitivity and Specificity , Surface Plasmon Resonance
5.
Nutr Rev ; 73(6): 359-75, 2015 Jun.
Article in English | MEDLINE | ID: mdl-26011911

ABSTRACT

The human gastrointestinal epithelium is responsible for adequate digestion and absorption of nutrients. It is an immunological interface and highly selective environment that facilitates colonization by commensal bacteria and prohibits adhesion and invasion of pathogenic agents. The epithelial barrier is reinforced by the intestinal glycome, which consists of the vast array of sugar structures and glycoconjugates expressed by cells of the gastrointestinal tract. Aberrant glycosylation is associated with altered responses to enteric infections as well as immune dysregulation. Intestinal glycosylation is susceptible to alteration by genetic, physiological, and pathological states, in addition to modification by nutritional and environmental stimuli. The effects of nutritional influences upon glycan assembly and topology are of particular importance in intestinal barrier reinforcement and homeostasis. For instance, milk contains factors that can alter intestinal glycosylation, which in turn contributes to early immune development and maturation of the newborn intestinal tract. This review focuses on the glycosylation status of intestinal cells and the means by which nutritional factors modulate the expression and presentation of intestinal glycans.


Subject(s)
Carbohydrate Metabolism , Diet , Glycoconjugates/metabolism , Intestinal Mucosa/metabolism , Nutritional Status , Polysaccharides/metabolism , Glycosylation , Humans
6.
BMC Microbiol ; 14: 282, 2014 Nov 25.
Article in English | MEDLINE | ID: mdl-25420416

ABSTRACT

BACKGROUND: Bifidobacteria constitute a specific group of commensal bacteria that commonly inhabit the mammalian gastrointestinal tract. Bifidobacterium breve UCC2003 was previously shown to utilize a variety of plant/diet/host-derived carbohydrates, including cellodextrin, starch and galactan, as well as the mucin and HMO-derived monosaccharide, sialic acid. In the current study, we investigated the ability of this strain to utilize parts of a host-derived source of carbohydrate, namely the mucin glycoprotein, when grown in co-culture with the mucin-degrading Bifidobacterium bifidum PRL2010. RESULTS: B. breve UCC2003 was shown to exhibit growth properties in a mucin-based medium, but only when grown in the presence of B. bifidum PRL2010, which is known to metabolize mucin. A combination of HPAEC-PAD and transcriptome analyses identified some of the possible monosaccharides and oligosaccharides which support this enhanced co-cultivation growth/viability phenotype. CONCLUSION: This study describes the potential existence of a gut commensal relationship between two bifidobacterial species. We demonstrate the in vitro ability of B. breve UCC2003 to cross-feed on sugars released by the mucin-degrading activity of B. bifidum PRL2010, thus advancing our knowledge on the metabolic adaptability which allows the former strain to colonize the (infant) gut by its extensive metabolic abilities to (co-)utilize available carbohydrate sources.


Subject(s)
Bifidobacterium/growth & development , Bifidobacterium/metabolism , Culture Media/chemistry , Microbial Interactions , Mucins/metabolism , Bifidobacterium/physiology , Carbohydrate Metabolism , Proteolysis
7.
Food Chem ; 165: 388-96, 2014 Dec 15.
Article in English | MEDLINE | ID: mdl-25038691

ABSTRACT

The bovine milk glycoprotein bovine lactoferrin (bLF) has a variety of biological activities related to its constituent glycans. However, little is known about bLF's oligosaccharide structural changes over the course of lactation. BLF was isolated at 13 time points during the first three months of lactation from three individual cows and glycosylation changes were profiled by lectin microarrays. Substantial profile differences between early and late lactation were observed and accompanying monosaccharide analysis revealed that the occurrence of the non-human sialic acid, N-glycolylneuraminic acid, was greater during early stage milk production. Overall, the data suggested that more diverse complex-type oligosaccharide structures were present on bLF during early lactation with an abundance of oligomannose type glycans in later lactation. The differences in the glycoprofiles of bLF from colostrum to mature milk suggest that these may have different functionality in vivo.


Subject(s)
Lactoferrin/chemistry , Lectins/chemistry , Milk/chemistry , Tissue Array Analysis/methods , Animals , Cattle , Female , Glycosylation , High-Throughput Screening Assays , Lactation
8.
Carbohydr Res ; 389: 123-33, 2014 May 07.
Article in English | MEDLINE | ID: mdl-24680511

ABSTRACT

Gram-negative Campylobacter jejuni is the leading cause of bacterial gastroenteritis in humans worldwide and the most frequently identified infectious trigger in patients developing Guillain-Barré syndrome (GBS). While C. jejuni is pathogenic in humans, it is a commensal in avian hosts. Bacterial cell surface carbohydrates are important virulence factors and play roles in adherence, colonisation and infection. The mechanisms leading to infection or persistent colonisation of C. jejuni are not well understood but host temperature may provide an important stimulus for specific adaptation. Thus, examination of the modulation of the total surface glycome of C. jejuni in response to temperature may help shed light on commensal and pathogenic mechanisms for this species. C. jejuni strains 81116 and 81-176 were cultured at 37 and 42°C to simulate human and avian host conditions, respectively, and whole cells were profiled on lectin microarrays constructed to include a wide range of binding specificities. C. jejuni 81116 profiles indicated that the previously characterised lipopolysaccharide (LPS)-like molecule and N-linked glycans were the predominantly recognised cell surface structures while capsular polysaccharide (CPS), lipooligosaccharides (LOS) and N-linked glycosylation were best recognised for strain 81-176 at 37°C. The profiles of both strains varied and were distinguishable at both temperatures. At the higher temperature, reduced dominance of the LPS-like structure was associated with strain 81116 and a change in the relative distribution of CPS and LOS structures was indicated for strain 81-176. This change in LOS molecular mass species distribution between temperatures was confirmed by SDS-PAGE analysis. Additionally, opposite behaviour of certain lectins was noted between the plate agglutination assay and the microarray platform. Insights into the important glycosylation involved in C. jejuni host cell tropism at different growth temperatures were gained using the lectin microarray platform.


Subject(s)
Campylobacter jejuni/genetics , Campylobacter jejuni/metabolism , Carbohydrate Metabolism , Gene Expression Profiling , Lectins/metabolism , Protein Array Analysis , Temperature , Agglutination , Animals , Carbohydrate Sequence , Glycosylation , Humans , Molecular Sequence Data , Species Specificity
9.
Glycobiology ; 24(3): 220-36, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24398766

ABSTRACT

Most secreted and cell membrane proteins in mammals are glycosylated. Many of these glycoproteins are also prevalent in milk and play key roles in the biomodulatory properties of milk and ultimately in determining milk's nutritional quality. Although a significant amount of information exists on the types and roles of free oligosaccharides in milk, very little is known about the glycans associated with milk glycoproteins, in particular, the biological properties that are linked to their presence. The main glycoproteins found in bovine milk are lactoferrin, the immunoglobulins, glycomacropeptide, a glycopeptide derived from κ-casein, and the glycoproteins of the milk fat globule membrane. Here, we review the glycoproteins present in bovine milk, the information currently available on their glycosylation and the biological significance of their oligosaccharide chains.


Subject(s)
Glycoproteins/metabolism , Milk Proteins/metabolism , Milk/chemistry , Protein Processing, Post-Translational , Animals , Cattle , Food Quality , Glycoproteins/chemistry , Glycosylation , Milk/economics , Milk/standards , Milk Proteins/chemistry
10.
PLoS One ; 8(6): e67224, 2013.
Article in English | MEDLINE | ID: mdl-23805302

ABSTRACT

In this study, we tested the hypothesis that milk oligosaccharides may contribute not only to selective growth of bifidobacteria, but also to their specific adhesive ability. Human milk oligosaccharides (3'sialyllactose and 6'sialyllactose) and a commercial prebiotic (Beneo Orafti P95; oligofructose) were assayed for their ability to promote adhesion of Bifidobacterium longum subsp. infantis ATCC 15697 to HT-29 and Caco-2 human intestinal cells. Treatment with the commercial prebiotic or 3'sialyllactose did not enhance adhesion. However, treatment with 6'sialyllactose resulted in increased adhesion (4.7 fold), while treatment with a mixture of 3'- and 6'-sialyllactose substantially increased adhesion (9.8 fold) to HT-29 intestinal cells. Microarray analyses were subsequently employed to investigate the transcriptional response of B. longum subsp. infantis to the different oligosaccharide treatments. This data correlated strongly with the observed changes in adhesion to HT-29 cells. The combination of 3'- and 6'-sialyllactose resulted in the greatest response at the genetic level (both in diversity and magnitude) followed by 6'sialyllactose, and 3'sialyllactose alone. The microarray data was further validated by means of real-time PCR. The current findings suggest that the increased adherence phenotype of Bifidobacterium longum subsp. infantis resulting from exposure to milk oligosaccharides is multi-faceted, involving transcription factors, chaperone proteins, adhesion-related proteins, and a glycoside hydrolase. This study gives additional insight into the role of milk oligosaccharides within the human intestine and the molecular mechanisms underpinning host-microbe interactions.


Subject(s)
Bacterial Adhesion/drug effects , Bifidobacterium longum subspecies infantis/metabolism , Intestinal Mucosa , Milk , Oligosaccharides/pharmacokinetics , Transcription, Genetic , Animals , Bacterial Adhesion/physiology , Caco-2 Cells , Humans , Intestinal Mucosa/metabolism , Intestinal Mucosa/microbiology , Oligonucleotide Array Sequence Analysis , Oligosaccharides/metabolism
11.
Appl Environ Microbiol ; 79(11): 3507-10, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23524672

ABSTRACT

A panel of commensal bacteria was screened for the ability to interact with galectin-3. Two strains of Bifidobacterium longum subsp. infantis interacted to a greater extent than did the pathogenic positive control, Escherichia coli NCTC 12900. Further validation of the interaction was achieved by using agglutination and solid-phase binding assays.


Subject(s)
Bifidobacterium/metabolism , Escherichia coli/metabolism , Galectin 3/metabolism , Agglutination Tests , Protein Binding , Surface Plasmon Resonance
12.
Anal Chem ; 85(2): 949-55, 2013 Jan 15.
Article in English | MEDLINE | ID: mdl-23215249

ABSTRACT

The presence of the nonhuman galactosyl-α-(1,3)-galactose (Gal-α-(1,3)-Gal) carbohydrate epitope on a number of recombinant therapeutic proteins has recently been reported, renewing interest in this immunogenic carbohydrate epitope. It is well-known that this motif is the primary contributing factor in hyperacute rejection of porcine organ xenograft, due to the existence of natural antibodies against this epitope in human serum. Though the number of epitopes on recombinant glycoproteins may be low when compared directly to whole tissue, circulating anti-Gal-α-R immunoglobulins can still induce anaphylaxis. Therefore, there is a need for rapid and convenient methods for detection and monitoring of this epitope in biopharmaceuticals produced in recombinant mammalian systems. To this end, we have generated immune-challenged chicken single-chain antibody variable-region fragment (scFv) libraries targeting the Gal-α-(1,3)-Gal motif and have selected a panel of scFv's that bind the target. We have used one of these antibodies to develop a competitive ELISA for both free and protein-bound Gal-α-(1,3)-Gal and have demonstrated that the ELISA is specific for the target and can be used to determine the loading of the target on glycoproteins. This competitive ELISA will provide a convenient method of detecting and quantifying Gal-α-(1,3)-Gal on therapeutic glycoproteins.


Subject(s)
Disaccharides/analysis , Enzyme-Linked Immunosorbent Assay , Glycoproteins/chemistry , Single-Chain Antibodies/chemistry , Animals , Chickens , Disaccharides/immunology , Glycoproteins/immunology , Recombinant Proteins/chemistry , Recombinant Proteins/immunology , Single-Chain Antibodies/immunology
13.
Mol Biosyst ; 8(5): 1472-81, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22373601

ABSTRACT

Endo-ß-N-acetylglucosaminidases (ENGases) are widely used to remove N-linked oligosaccharides from glycoproteins for glycomic and proteomic studies and biopharmaceutical processes. Although several ENGases are widely available and their main oligosaccharide structural preferences are generally known (i.e. high mannose, hybrid or complex), the preferences of ENGases from different kingdoms for individual structural isoforms within the major classes of N-linked oligosaccharides have previously not been compared. In this work, a fungal ENGase (Endo Tv) was purified for the first time from a commercial Trichoderma viride chitinase mixture by sequential anion exchange and size exclusion chromatography, a commonly used strategy for purification of chitinases and endo enzymes. Oligosaccharides released from substrate glycoproteins by Endo Tv were identified and quantified by high pH anion exchange chromatography with pulsed amperometric detection and verified by mass spectrometric analysis. Unlike the widely-used bacterial ENGases, Endo H and Endo F1, Endo Tv released exclusively high mannose N-linked oligosaccharides from RNase B, ovalbumin, and yeast invertase. Endo Tv did not hydrolyze fucosylated, hybrid, complex type or bisecting N-acetylglucosamine-containing structures from bovine fetuin, ovalbumin and IgG. When compared to the bacterial ENGase, Endo H, the relative ratio of high-mannose oligosaccharide structural isoforms released from RNase B by Endo Tv was found to differ, with Endo Tv releasing more Man5GlcNAc and Man7GlcNAc isoform I and less Man(9)GlcNAc from RNase B. Based on these data, it is suggested that use of ENGases from multiple sources may serve to balance an introduced bias in quantitative analysis of released structural isoforms and may further prove valuable in biochemical structure-function studies.


Subject(s)
Bacteria/enzymology , Fungi/enzymology , Mannose/chemistry , Mannose/metabolism , Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase/metabolism , Amino Acid Sequence , Animals , Cattle , Chitinases/metabolism , Chromatography, Gel , Chromatography, Ion Exchange , Electrophoresis, Polyacrylamide Gel , Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase/chemistry , Molecular Sequence Data , Oligosaccharides/analysis , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Trichoderma/enzymology
14.
Anal Chem ; 84(7): 3330-8, 2012 Apr 03.
Article in English | MEDLINE | ID: mdl-22390135

ABSTRACT

Mucins are the principal components of mucus, and mucin glycosylation has important roles in defense, microbial adhesion, immunomodulation, inflammation, and cancer. Mucin expression and glycosylation are dynamic, responding to changes in local environment and disease. Potentially hundreds of heterogeneous glycans can substitute one mucin molecule, and it is difficult to identify biologically accessible glyco-epitopes. Thirty-seven mucins, from the reproductive and gastrointestinal (GI) tracts of six species (bovine, ovine, equine, porcine, chicken, and deer) and from two human-derived cell lines, were purified. Following optimization of mucin printing and construction of a novel mucin microarray, the glycoprofiles of the whole mucins on the microarray were compared using a panel of lectins and one antibody. Accessible glyco-motifs of GI mucins varied according to species and localization of mucin origin, with terminal fucose, the sialyl T-antigen, and N-linked oligosaccharides identified as potentially important. The occurrence of T- and sialyl T-antigen varied in bovine and ovine reproductive tract mucins, and terminal N-acetylgalactosamine (GalNAc) and sulfated carbohydrates were detected. This study introduces natural mucin microarrays as an effective tool for profiling mucin glyco-epitopes and highlights their potential for discovery of biologically important motifs in bacterial-host interactions and fertility.


Subject(s)
Epitopes , Mucins/chemistry , Mucins/metabolism , Protein Array Analysis/methods , Animals , Cattle , Cell Line , Gastrointestinal Tract/metabolism , Glycosylation , Humans , Monosaccharides/analysis , Printing
15.
Cell Cycle ; 10(17): 2924-36, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21857157

ABSTRACT

We have analyzed the proteomes of two human melanoma cell lines (A375 and 526), and of the human melanocytes, (FOM 78), by two-dimensional electrophoresis (2D-PAGE) and liquid chromatography - tandem mass spectrometry (LC-MS/MS). Our comparative proteomic analysis revealed that six proteins were over-expressed in both melanoma cell lines as compared to melanocytes: galectin-1, inosine-5'-monophosphate dehydrogenase 2, serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform, protein DJ-1, cyclophilin A and cofilin-1. We show, for the first time, that only specific isoforms of these molecules are over-expressed in melanoma. Different protein profiles were also found between each individual melanoma cell line and the melanocytes. s-Methyl-5-thioadenosine phosphorylase, ubiquitin and ribosomal protein S27 a precursor, the basic form of protein DJ-1, annexin a1, proliferation associated protein 2g4, isoform alfa-enolase of alfa-enolase, protein disulfide-isomerase precursor, and elongation factor 2 were more strongly expressed in A375 cells compared to melanocytes. In 526 cells, 60s acidic ribosomal protein p1 and calreticulin precursor were more highly expressed than in melanocytes. These molecular differences may help in better understanding melanoma development and its different responsiveness to therapies. The identified proteins could be exploited as biomarkers or therapeutic targets for melanoma.


Subject(s)
Melanocytes/metabolism , Melanoma/metabolism , Protein Precursors/metabolism , Proteome/analysis , Biomarkers , Blotting, Western , Cell Line, Tumor , Chromatography, Liquid , Cofilin 1/metabolism , Cyclophilin A/metabolism , Electrophoresis, Gel, Two-Dimensional , Galectin 1/metabolism , Humans , IMP Dehydrogenase/metabolism , Image Processing, Computer-Assisted , Intracellular Signaling Peptides and Proteins/metabolism , Mass Spectrometry/methods , Oncogene Proteins/metabolism , Protein Deglycase DJ-1 , Protein Isoforms/metabolism , Proteomics
16.
Biochem Soc Trans ; 38(5): 1333-6, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20863309

ABSTRACT

Following steady advances in analytical technologies, our knowledge in glycomics is now increasing rapidly. Over the last decade, specific glycans have been described that are associated with a range of diseases, such as cancer and inflammation, with host-pathogen interactions and with various stages during stem cell development and differentiation. Simultaneously, deeper structural insight has been gained on glycosylated biopharmaceutical protein therapeutics manufactured in CHO (Chinese-hamster ovary) and other cell systems. This glycomic information is highly relevant for clinicians and biomanufacturing industries as a new class of glycobiomarkers emerges. However, current methods of glycoanalysis are primarily research tools and are not suitable for point-of-care on-site detection and analysis, or sensor devices. Lectin-based glycan detection provides the most promising approach to fill these gaps. However, the limited availability of lectins with high specificity and sensitivity for specific glycan motifs presents one of the main challenges in building reliable glycobiosensors. Recent reports have demonstrated the use of recombinant protein engineering, phage display and aptamer technologies in the production of lectin mimics, as well as the construction of biosensors that are capable of rapidly detecting glycan motifs at low levels in both a labelled and label-free manner. These are primarily proof-of-principle reports at this stage, but some of the approaches, either alone or in combination, will lead to functional glycobiosensors in the coming years which will be valuable tools for the clinical, biopharmaceutical and life science research communities.


Subject(s)
Biomimetics , Biosensing Techniques , Glycomics , Animals , Humans , Lectins/chemistry , Polysaccharides/chemistry
17.
Analyst ; 135(10): 2471-80, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20714521

ABSTRACT

The field of biosensor development now encompasses several areas specifically geared toward the rapid and sensitive detection, identification, and quantification of target analytes. In contrast to the more mature research and development of nucleic acid and protein biosensors, the development of 'glyco-biosensors' for detecting carbohydrates and conjugates of carbohydrates (glycoconjugates) is at a relatively nascent stage. The application of glyco-biosensors aims to open novel analytical and diagnostic avenues, encompassing industrial bioprocesses, biomedical and clinical applications. This area of research has been greatly aided by advancement brought by interdisciplinary mergers of engineering, biology, chemistry and physical sciences and enabling the miniaturization of detection platforms. In this review, we briefly introduce the need for glyco-biosensors, discuss current analytical technologies, and examine advances in glyco-biosensor approaches aimed at the detection and/or quantification of glycoconjugates or carbohydrates derived from glycoconjugates since 2005.


Subject(s)
Biosensing Techniques/methods , Carbohydrates/analysis , Electrochemical Techniques , Fluorescence Resonance Energy Transfer , Lectins/chemistry , Surface Plasmon Resonance
18.
Methods Mol Biol ; 562: 83-97, 2009.
Article in English | MEDLINE | ID: mdl-19554289

ABSTRACT

Phage display has the capacity to rapidly isolate recombinant antibodies against protein targets and other molecules of significant size. However, there is no obvious lower limit to the power of the selection methods: this chapter describes how the techniques of phage display can be adapted to allow the isolation of antibodies against very small compounds. Antibodies generated in this way have many uses including the detection and quantitative analysis of the target chemical moiety in samples such as foods, water, and body fluids.


Subject(s)
Antibodies, Monoclonal/immunology , Biosensing Techniques/methods , Haptens/immunology , Immunoglobulin Variable Region/isolation & purification , Peptide Library , Bacteriophages/immunology , Humans , Immunoglobulin Variable Region/genetics , Immunoglobulin Variable Region/immunology
19.
Biosens Bioelectron ; 24(4): 716-22, 2008 Dec 01.
Article in English | MEDLINE | ID: mdl-18775658

ABSTRACT

Electrochemical immunosensors based on a competitive indirect enzyme-linked immunosorbent assay (ciELISA) and an enzymatic recycling system were developed for the detection of okadaic acid (OA). OA-ovalbumin (OA-OVA) conjugate was immobilised on screen-printed electrodes (SPEs) and competition of a newly generated monoclonal antibody (MAb) for free and immobilised OA was subsequently performed. Secondary antibodies labelled with alkaline phosphatase (ALP) or horseradish peroxidase (HRP) were used for signal generation. Experimental parameters were firstly optimised by colorimetric ELISA on microtiter wells and on SPEs. The ELISA system was then tested by amperometry at +300 mV vs. Ag/AgCl (detection of p-aminophenol produced by the reaction of p-aminophenyl phosphate with ALP) or -200 mV vs. Ag/AgCl (detection of 5-methyl-phenazinium methyl sulfate, redox mediator in the HRP bioelectrocatalysis). The limits of detection (LODs) with standard solutions were 1.07 and 1.98 microgL(-1) when using ALP and HRP labels, respectively. An electrochemical signal amplification system based on diaphorase (DI) recycling was integrated into the ALP-based immunosensor, decreasing the LOD to 0.03 microgL(-1) and enlarging the working range by two orders of magnitude. Preliminary results with mussel and oyster extracts were obtained and compared with the colorimetric immunoassay, the colorimetric protein phosphatase inhibition assay (PPIA) and LC-MS/MS.


Subject(s)
Biosensing Techniques/instrumentation , Electrochemistry/instrumentation , Food Analysis/instrumentation , Food Contamination/analysis , Immunoassay/instrumentation , Mollusca/chemistry , Okadaic Acid/analysis , Shellfish/analysis , Animals , Biosensing Techniques/methods , Equipment Design , Equipment Failure Analysis , Reproducibility of Results , Sensitivity and Specificity
20.
Anal Chem ; 80(9): 3205-12, 2008 May 01.
Article in English | MEDLINE | ID: mdl-18384202

ABSTRACT

The potential of immunoassays as high-throughput screening tools for the detection of harmful substances in foods will only be realized when convenient methods are available for production of the high affinity antibodies needed for sensitive assay development. Recombinant antibodies offer advantages over traditional monoclonal antibodies in terms of ease of production, much greater antibody repertoire for selection, and versatility. We describe here the development of recombinant antibodies against the common shellfish toxin, domoic acid (DA), utilizing the sheep immunoglobulin system as an effective method for generating high affinity anti-hapten recombinant antibody fragments. A single-chain antibody fragment (scFv) library was generated from a sheep immunized with DA-bovine serum albumin conjugate, and anti-DA scFvs were isolated by phage-display. Three selected scFvs gave I50s of 2.6 to 58 ng/mL (8.3-186 nM) in competitive enzyme-linked immunosorbent assay (ELISA). Assay optimization with one of these scFvs gave a very reproducible standard curve with a range of 0.3 to 5.6 ng/mL (1.0 to 17.9 nM), a mean limit of quantification (LOQ, defined as the I20) of 0.5 ng/mL (1.6 nM), and a mean I50 of 1.2 ng/mL (3.9 nM). When the assay was used for the analysis of crude methanolic extracts of scallop tissues, results obtained correlated well with standard HPLC assay results (R2, 0.90, n = 40; R2, 0.81, n = 34), although ELISA results were lower than HPLC results. Adjusting the cutoff point for DA concentration accordingly from the regulatory 20 mg/kg, the potential of the sheep scFv-based ELISA for use as a screening assay for DA in shellfish extracts was demonstrated.


Subject(s)
Enzyme-Linked Immunosorbent Assay/methods , Immunoglobulin Fragments/chemistry , Kainic Acid/analogs & derivatives , Marine Toxins/analysis , Shellfish/analysis , Animals , Chromatography, High Pressure Liquid , DNA, Complementary/genetics , Female , Immunoglobulin Fragments/genetics , Immunoglobulin Fragments/immunology , Kainic Acid/analysis , Kainic Acid/immunology , Ovalbumin/chemistry , Peptide Library , RNA/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Serum Albumin, Bovine/chemistry , Sheep
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