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1.
Biochem Biophys Res Commun ; 657: 128-135, 2023 05 21.
Article in English | MEDLINE | ID: mdl-37004285

ABSTRACT

BC-1215, bis-pyridinyl benzyl ethanediamine, is an inhibitor of F-box only protein 3 (FBXO3) and exerts anti-inflammatory effects. BC-1215 inhibits interactions between FBXO3-F-box and the leucine rich repeat protein 2 (FBXL2), leading to the upregulation of FBXL2 expression, FBXL2-mediated ubiquitination and the degradation of tumor necrosis factor receptor (TNFR)-associated factor 6 (TRAF6) or NOD-, LRR- and the pyrin domain-containing protein 3 (NLRP3), which subsequently results in the down-regulation of inflammatory cytokine production. In the current study, we investigated the issue of whether or how BC-1215 suppresses the ATP-induced secretion of IL-1ß in LPS-primed human macrophage-like cells, THP-1 cells. Our result show that pre-treatment with BC-1215 attenuated the ATP-induced secretion of IL-1ß in LPS-primed THP-1 cells. Treatment of the LPS-primed THP-1 cells with BC-1215 resulted in a decrease in the level of NLRP3 and pro-IL-1ß at the protein level, but not at the mRNA level. In addition, treatment with MG-132, but not leupeptin, inhibited the BC-1215-induced degradation of NLRP3 and pro-IL-1ß proteins, and restored their levels, suggesting that BC-1215 decreases the stability of NLRP3 and pro-IL-1ß at the protein level via proteasome-dependent degradation. Our results also show that FBXL2, which is increased by BC-1215, bound to and ubiquitinated NLRP3 and pro-IL-1ß, but not pro-caspase-1. These collective results indicate that treatment with BC-1215, an inhibitor of FBXO3, inhibits ATP-induced IL-1ß secretion via the FBXL2-mediated ubiquitination and degradation of pro-IL-1ß as well as NLRP3 in LPS-primed THP-1 cells, suggesting that FBXO3 is a potential therapeutic target for developing agents against inflammatory diseases.


Subject(s)
F-Box Proteins , NLR Family, Pyrin Domain-Containing 3 Protein , Humans , Adenosine Triphosphate/metabolism , Caspase 1/metabolism , F-Box Proteins/metabolism , Inflammasomes/metabolism , Interleukin-1beta/metabolism , Lipopolysaccharides , NLR Family, Pyrin Domain-Containing 3 Protein/metabolism , THP-1 Cells , Ubiquitination
2.
Ecotoxicol Environ Saf ; 253: 114653, 2023 Mar 15.
Article in English | MEDLINE | ID: mdl-36812868

ABSTRACT

In-water cleaning (IWC) involves the removal of biofilms and foulants from the hull of a ship using brush or water jet. During IWC, several factors associated with the harmful chemical contaminants release to the marine environment, which can create "hotspots" of chemical contamination in coastal areas. To elucidate the potential toxic effects of IWC discharge, we investigated developmental toxicity in embryonic flounder, which are sensitive life stage to chemical exposure. Zinc and copper were the dominant metals, while zinc pyrithione was the most abundant biocide associated with IWC discharge in two remotely operated IWC. Discharge from IWC carried by both remotely operated vehicles (ROVs) produced developmental malformations including pericardial edema, spinal curvature, and tail-fin defects. In an analyses of differential gene expression profiles (fold-change of genes with a cutoff < 0.05) as assessed by high-throughput RNA sequencing, genes associated with muscle development were commonly and significantly changed. The gene ontology (GO) of embryos exposed to IWC discharge from ROV A activities highly enriched muscle and heart development, while cell signaling and transport were evident in embryos exposed to IWC discharge of ROV B. We analyzed the gene network by significant GO terms. In the network, TTN, MYOM1, CASP3, and CDH2 genes appeared to be key regulators of the toxic effects on muscle development. In embryos exposed to ROV B discharge, HSPG2, VEGFA, and TNF genes related to the nervous system pathway were affected. These results shed light on the potential impacts of muscle and nervous system development in non-target coastal organisms exposed to contaminants found in IWC discharge.


Subject(s)
Robotic Surgical Procedures , Water Pollutants, Chemical , Animals , Water/chemistry , Fishes , Metals/pharmacology , Biofilms , Water Pollutants, Chemical/analysis , Embryo, Nonmammalian
3.
Antioxidants (Basel) ; 12(1)2023 Jan 05.
Article in English | MEDLINE | ID: mdl-36670989

ABSTRACT

This study evaluates the toxic effects of dietary Cd and mitigative effects of AsA supplementation by measuring the growth performance, bioaccumulation, hematological parameters, plasma components, and antioxidant responses of Starry flounder (Platichthys stellatus). Platichthys stellatus (mean weight, 69.5 ± 1.4 g; mean length, 18.2 ± 0.21 cm) was fed with dietary cadmium-ascorbic acid (Cd-AsA) composed of C0A0, C0A500, C0A1000, C40A0, C40A500, C40A1000, C80A0, C80A500, and C80A1000 mg of Cd-AsA per kg diet for four weeks. Our results showed that Cd accumulation significantly increased in proportion to the Cd concentration, where the highest levels were observed in the intestine, followed by the kidney, liver, and gills. Dietary AsA significantly mitigated the Cd accumulation in all tissues, and the reduction in Cd accumulation was proportional to the increase in AsA concentration. Dietary Cd has adverse effects on growth performance (body weight gain, specific growth rate, feed conversion ratio, and hepatosomatic index) and can alter the hematological parameters (red blood cell count, hematocrit, and hemoglobin), plasma components (glucose, total protein, glutamic oxaloacetic transaminase, and glutamic pyruvic transaminase), and antioxidant responses (superoxide dismutase, catalase, glutathione S-transferase, and glutathione). Dietary AsA restored the decreased growth performance parameters and the altered hematological parameters, plasma components, and antioxidant responses caused by the dietary Cd exposure. The results of this study showed that dietary Cd is toxic to P. stellatus, while dietary AsA is effective in mitigating the toxic effects of Cd.

4.
Langmuir ; 37(32): 9755-9763, 2021 08 17.
Article in English | MEDLINE | ID: mdl-34347501

ABSTRACT

Apolipoproteins have been often found to be highly enriched in the serum protein coronas produced on various engineered nanoparticles (NPs), which is also known to greatly influence the behaviors of protein corona NPs in the biological systems. As most of the apolipoproteins in blood are associated with lipoproteins, it suggests the active involvement of lipoproteins in the formation of biomolecular coronas on NPs. However, the interactions of lipoprotein complexes with NPs in the corona formation have been rarely understood. In this study, to obtain insights into the interactions, the formation of biomolecular coronas of high-density lipoproteins (HDLs) on the PEGylated gold NPs (PEG-AuNPs) of various sizes (20-150 nm dia.) was investigated as a model system. The results of this study revealed a noticeable size dependence, which is a drastic increase in the affinity of HDL for larger NPs and thus less-curved NP surfaces. For example, only a few HDLs per NP, which correspond to 5% surface coverage, were found to constitute the hard coronas of HDLs on 20 nm PEG-AuNPs, whereas 73% surface coverage was assessed for larger 150 nm PEG-AuNPs. However, the relative affinities of HDL and apolipoprotein A-1 (APOA1) examined in competition with human serum albumin exhibited the opposite size dependences, which suggests that the adsorption of HDLs is not driven by the constituent protein, APOA1. In fact, the total strength of non-covalent intermolecular interactions between a HDL particle and a NP relies on the physical contact between the two particles, which thus depends on the varying curvatures of spherical NPs in this case. Therefore, it was concluded that it is whole HDL complex that interacts with the spherical PEG-AuNPs in the initial stage of adsorption toward biomolecular coronas, which is unveiled by the distinct size dependence observed in this study.


Subject(s)
Metal Nanoparticles , Nanoparticles , Protein Corona , Adsorption , Gold , Humans , Lipoproteins, HDL , Polyethylene Glycols
5.
Mar Pollut Bull ; 172: 112895, 2021 Nov.
Article in English | MEDLINE | ID: mdl-34455348

ABSTRACT

To determine how bacterial communities succeed after the initial attachment of the bacterial biofilm adhesion using 16S rDNA meta-barcoding in plates coated with copper-based anti-fouling (AF) and non-AF (control) coatings as well as ambient seawater, coated plates were submerged in a marine environment in situ. Alteromonas genovensis (Gammaproteobacteria) in AF coating and Pacificibacter sp. (Alphaproteobacteria) in the control plate were initially abundant. In the AF coating, the abundance of A. genovensis decreased rapidly, whereas that of genus Phaeobacter (Alphaproteobacteria), Serratia (Gammaproteobacteria) and Cupriavidus (Betaproteobacteria) increased. Bacterial community in the control plate had a strong connection to pathogenic Vibrio spp. associated with the growth of invertebrates. Therefore, in the in situ AF coating experiment, A. genovensis accumulation was initially and intensively increased, and the bacteria responded to chemical antagonism, induced the proliferation of specific biofilm bacteria and influenced the interactions and recruitment of additional bacterial communities.


Subject(s)
Biofouling , Alteromonas , Bacteria , Biofilms , Biofouling/prevention & control , Paint
6.
J Hazard Mater ; 403: 123708, 2021 02 05.
Article in English | MEDLINE | ID: mdl-33264892

ABSTRACT

Hydroblasting is used to remove biofouling and exhausted antifouling paints from ship hulls. Effluents generated from this process contain paint particles, metals, and booster biocides that may have toxic effects on organisms. To understand the potential risks of effluent discharge on marine environments, we analyzed the concentrations of metals in effluents collected during the dry-dock cleaning of ship hulls by hydroblasting. Copper and zinc were the principal metals, with concentrations ranging from 1440 to 9110 µg/L and 1800 to 22,600 µg/L, respectively. These concentrations are sufficiently high to cause harmful effects to most marine organisms. Model predictions suggested that the effluent discharge from hydroblasting posed risks to the wider marine environment of a hull-cleaning site, depending on the scale of the hull-cleaning operations and the size of the receiving environment, as well as various hydrodynamic factors. These effluents are inevitably hazardous, and their environmental release should be managed and regulated on the basis of site-specific risk assessments.

7.
Aquat Toxicol ; 227: 105615, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32932041

ABSTRACT

Chemical contaminants can be discharged by vessel hull cleaning processes, such as scraping, jet spraying, and painting, all of which produce readily transportable contaminants into the marine environment, where they are referred to as 'hotspots' of contamination in coastal areas. However, many countries have not yet established effective evaluation methods for disposal of waste mixtures or management guidelines for areas of hull cleaning. To define the toxic effects of wastewater from vessel hull cleaning in dry docks on resident non-target organisms, we investigated the chemical concentrations and developmental toxicity on embryonic flounder, which is an organism sensitive to chemical contamination. In this study, the dominant inorganic metal discharged was zinc when cleaning Ship A (300 tons) and copper for Ship B (5,000 tons). The wastewater from high-pressure water blasting (WHPB) of Ship A (300 tons) and Ship B (5,000 tons) produced a largely overlapping suite of developmental malformations including pericardial edema, spinal curvature, and tail fin defects. Forty-eight hours after exposure, the frequency percentage of malformation began to increase in embryos exposed to a 500-fold dilution of WHPB from Ships A and B. We performed transcriptome sequencing to characterize the toxicological developmental effects of WHPB exposure at the molecular level. The results of the analysis revealed significantly altered expression of genes associated with muscle cell differentiation, actin-mediated cell contraction, and nervous system development (cutoff P < 0.01) in embryonic flounder exposed to high-pressure cleaning effluent from Ship A. Genes associated with chromatin remodeling, cell cycling, and insulin receptor signaling pathways were significantly altered in embryonic flounder exposed to WHPB of Ship B (cutoff P < 0.01). These findings provide a greater understanding of the developmental toxicity and potential effects of WHPB effluent on coastal embryonic fish. Furthermore, our results could inform WHPB effluent management practices to reduce impacts on non-target coastal organisms.


Subject(s)
Waste Disposal, Fluid , Water Pollutants, Chemical/toxicity , Animals , Biofouling , Fishes , Flounder , Metals , Ships , Wastewater/chemistry
8.
Mar Pollut Bull ; 155: 110729, 2020 Jun.
Article in English | MEDLINE | ID: mdl-32469750

ABSTRACT

We examined the spatial distribution and local characteristics of microplastics (0.33-5 mm) in surface water from six semi-enclosed bays and two coastal waters in Korea. Surveys were conducted in July from 2015 to 2017 using a Manta trawl. The mean abundance of total microplastics ranged from 1.12-4.74 particles/m3 among sites; the microplastics were mostly expanded polystyrene (EPS), paint particles, fragments and fibers. The mean microplastic abundance (2.85 particles/m3) in urban areas was about 1.5 times higher than in rural areas (1.86 particles/m3) (p < 0.05). EPS dominated at rural sites, while fragments, paint particles, and fibers were relatively more dominant in urban areas. The different types and quantities of microplastic particles indicated that the region-specific occurrence of microplastics is likely to be related to differences in human activities between urban and rural areas, even though fibers were distributed throughout the study area.


Subject(s)
Plastics , Water Pollutants, Chemical/analysis , Environmental Monitoring , Microplastics , Republic of Korea
9.
Biochem Biophys Res Commun ; 522(4): 939-944, 2020 02 19.
Article in English | MEDLINE | ID: mdl-31806367

ABSTRACT

The retinoic-acid inducible gene (RIG)-I is a cytoplasmic pattern recognition receptor that senses single-stranded (ss) or double-stranded (ds) RNA. RIG-I also senses AT-rich dsDNA, poly(dA:dT), through the action of an RNA polymerase III-transcribed RNA intermediate. Upon the binding of an RNA ligand, RIG-I binds to the mitochondrial antiviral-signaling protein (MAVS) and induces the formation of filamentous aggregates of MAVS, leading to the formation of a signaling complex that drives Type I interferon (IFN) responses. In the current study, we investigated the issue of whether the SUMOylation of MAVS induced by poly(dA:dT) affects the aggregation of MAVS in the RIG-I/MAVS pathway in human keratinocytes. Our results show that the poly(dA:dT)-induced secretion of IFN-ß was dependent on RIG-I and MAVS. The inhibition of SUMOylation by Ginkgolic acid or Ubc9 siRNA was found to inhibit the poly(dA:dT)-induced secretion of IFN-ß, suggesting that the SUMOylation is required for the poly(dA:dT)-activated RIG-I/MAVS pathway, which drives the secretion of IFN-ß. In addition, treatment with poly(dA:dT) enhanced the formation of polymeric chains of small-ubiquitin like modifiers (SUMO)3, but not SUMO1 and SUMO2, on MAVS. Our results also show that the conjugation of SUMO3 to MAVS induced by poly (dA:dT) enhanced the aggregation of MAVS. These collective results show that the formation of SUMO3-conjugated chains of MAVS induced by poly (dA:dT), a ligand of RIG-I, enhances the aggregation of MAVS which, in turn, drives the secretion of IFN-ß in human keratinocytes.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , DEAD Box Protein 58/metabolism , Interferon-beta/metabolism , Keratinocytes/metabolism , Poly dA-dT/pharmacology , Protein Aggregates , Ubiquitins/metabolism , Cell Line , Humans , Keratinocytes/drug effects , Ligands , Protein Aggregates/drug effects , Protein Domains , RNA, Small Interfering/metabolism , Receptors, Immunologic , Salicylates/pharmacology , Sequence Deletion , Sumoylation/drug effects , Ubiquitin-Conjugating Enzymes/metabolism
10.
Ecotoxicol Environ Saf ; 180: 23-32, 2019 Sep 30.
Article in English | MEDLINE | ID: mdl-31059904

ABSTRACT

The use of alternative biocides has increased due to their economic and ecological relevance. Although data regarding the toxicity of commercial alternative biocides in marine organisms are accumulating, little is known about their toxic pathways or mechanisms. To compare the toxic effects of commercial alternative biocides on non-target pelagic fish (flounder) embryos, we investigated the adverse effects of developmental malformation and transcriptional changes. Three biocides including Diuron, Irgarol 1051® and Sea-Nine 211® produced a largely overlapping suite of developmental malformations, including tail-fin fold defects and dorsal body axis curvature. In our test, the potencies of these biocides were ranked in the following order with respect to malformation and mortalities: Sea-Nine 211®â€¯> Irgarol 1051®â€¯> Diuron. Consistent with the toxicity rankings, the expression of genes related to heart formation was greater in embryonic flounder exposed to Sea-Nine 211® than in those exposed to Irgarol 1051® or Diuron, while expression of genes related to fin malformation was greater in the Irgarol 1051® exposure group. In analyses of differential gene expression (DEG) profiles (fold change of genes with a cutoff P < 0.05) by high-throughput sequencing (RNA-seq), genes associated with nervous system development, transmembrane transport activity, and muscle cell development were significantly changed commonly. Embryos exposed to Diuron showed changes related to cellular protein localization, whereas genes associated with immune system processes were up-regulated significantly in embryos exposed to Irgarol 1051®. Genes related to actin filament organization and embryonic morphogenesis were up-regulated in embryos exposed to Sea-Nine 211®. Overall, our study provides a better understanding of the overlapping and unique developmental toxic effects of three commercial booster biocides through transcriptomic analyses in a non-target species, embryonic flounder.


Subject(s)
Disinfectants/toxicity , Embryo, Nonmammalian/drug effects , Fishes/growth & development , Water Pollutants, Chemical/toxicity , Animals , Biofouling/prevention & control , Diuron/toxicity , Embryonic Development/drug effects , Thiazoles/toxicity , Triazines/toxicity
11.
Zookeys ; (792): 45-68, 2018.
Article in English | MEDLINE | ID: mdl-30386159

ABSTRACT

An investigation on the habitation of Callipogonrelictus Semenov, 1899 in Gwangneung forest was carried out, where the Korea National Arboretum is located. In an investigation spanning the last eleven years (2007-2017), 22 emergence holes, nine pupal chambers, six adults, and two larvae of C.relictus were identified. In this study, biological information about habitation of C.relictus is provided by comparing and combining the results of this investigation with a survey conducted in Ussurisky Nature Reserve, Russia, in 2015. The distribution is also reviewed to include the Korean Peninsula and a new location of South Korea is added to the distribution for C.relictus.

12.
Aquat Toxicol ; 205: 165-173, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30391725

ABSTRACT

Sea-Nine (4,5-dichloro-2-n-octyl-4-isothiazoline3-one; DCOIT) antifoulant has been widely used owing to its broad spectrum of biocide activity against major fouling organisms. In this study, several physiological parameters of a marine mysid were analyzed upon exposure to sublethal environmental concentrations (1 and 100 ng L-1) of Sea-Nine in two exposure conditions, intermittent (weekly; once per week) and constant (daily; once per 24 h) exposure, for 4 weeks. In both experimental conditions, growth retardation, acetylcholinesterase (AChE) activity, glutathione S-transferase (GST) activity, and number of newborn juveniles as second generation, together with their survival were measured. Morphometric parameters of total body, antennal scale, exopod, endopod, and telson were significantly retarded by 22%, 14%, 13%, and 24%, respectively, by daily exposure to 100 ng L-1 Sea-Nine for 4 weeks. Significant inhibition of AChE activity was observed at week 4 in the 100 ng L-1 daily Sea-Nine-exposed groups, whereas no significant GST activity was measured at the same experimental conditions. Inhibition of AChE activity would be associated with impairment of cholinergic system and may adversely modulate growth parameters of the mysid. The number of newly hatched juveniles from females that were exposed daily to 100 ng L-1 Sea-Nine was significantly lower than that of the control. Although no significant differences were observed between survival percentages of newborn juveniles for 30 days, mortality (NOEC and LC50) increased in the surviving offspring from the 100 ng L-1-exposed 1st generation of mysids. These findings suggested that constant exposure to Sea-Nine has detrimental effects on the growth parameters of marine mysids with inhibition of AChE activity.


Subject(s)
Acetylcholinesterase/metabolism , Crustacea/drug effects , Crustacea/enzymology , Disinfectants/toxicity , Environmental Exposure , Animals , Body Size/drug effects , Enzyme Activation/drug effects , Female , Growth/drug effects , Water Pollutants, Chemical/toxicity
13.
Mar Environ Res ; 140: 96-103, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29895506

ABSTRACT

Tributyltin (TBT) is as an antifouling organotin compound used in boat paints. Although organotin-based antifouling agents have been banned on a global scale, the mode of action of TBT has been studied in numerous aquatic species because of its toxicity, persistence, bioaccumulation potential, and endocrine-disrupting characteristics. In this study, we conducted 96-h acute toxicity tests wherein we exposed juvenile and adult marine mysids to waterborne TBT. Over 4 weeks of exposure, mortality was dose-dependently increased in juveniles and adult mysids. To test sublethal effects of TBT on juvenile development, newborn juvenile mysids were exposed to 1, 5, or 10 ng L-1 TBT for 4 weeks. Subsequently, we measured morphological growth parameters and quantified the hormone ecdysterone (20-hydroxyecdysone: 20E), which controls molting in mysids. The lengths of the whole body, antennal scale, exopod, endopod, and telson were significantly smaller in the 5 and/or 10 ng L-1 TBT-exposed juvenile mysids than in control and DMSO-exposed groups. Levels of 20E were significantly lower at 5 and 10 ng L-1 TBT exposures. Additionally, the number of newly hatched juveniles was significantly lower from females previously exposed to 10 ng L-1 TBT. Our results indicate sublethal concentrations of TBT have inhibitory effects on the survival, growth, and production of juveniles. The lower 20E levels could be strongly associated with TBT-triggered inhibition.


Subject(s)
Crustacea/physiology , Ecdysterone/toxicity , Endocrine Disruptors/toxicity , Toxicity Tests , Trialkyltin Compounds/toxicity , Water Pollutants, Chemical/toxicity , Animals
14.
Article in English | MEDLINE | ID: mdl-29746996

ABSTRACT

Organotin compounds, such as tributyltin (TBT) and triphenyltin (TPT), have been widely used to control marine fouling. Here, we show that organotin stimulation reduces the hormone levels in the plasma of two economically important aquaculture fish. Blood plasma samples were collected from juvenile red seabream and black rockfish exposed to environmentally realistic concentrations of TBT and TPT for 14 days. The levels of two plasma biomarkers, namely the yolk protein precursor vitellogenin (VTG) and the sex steroid 17ß-estradiol (E2), were measured to determine the endocrine disrupting potential of the organotin compounds. Both organotin compounds were dose-dependently accumulated in the blood of two fish. Exposure to waterborne TBT and TBT significantly decreased the plasma VTG levels in both the juvenile fish in a dose-dependent manner. In contrast, the treatment with E2, a well-known VTG inducer, significantly increased the plasma VTG levels in both the fish. In addition, the mRNA levels of vtg were also downregulated in the liver tissues of both the fish at 100 and/or 1000 ng L-1 of TBT or TPT exposure. The plasma E2 titers were significantly suppressed at 100 and/or 1000 ng L-1 of TBT or TPT exposure for 14 days compared to their titer in the control. Since estrogen directly regulates vtg gene expression and VTG synthesis, our results reveal the endocrine disrupting potential of organotin compounds, and subsequently the endocrine modulation at early stage of fish can trigger further fluctuations in sexual differentiation, maturation, sex ration or egg production. In addition, the results demonstrate their effects on non-target organisms, particularly on animals reared in aquaculture and fisheries.


Subject(s)
Endocrine Disruptors/toxicity , Estradiol/blood , Organotin Compounds/toxicity , Perches/blood , Sea Bream/blood , Vitellogenins/blood , Water Pollutants, Chemical/toxicity , Animals , Aquaculture , Biomarkers/blood , Estrogen Antagonists/chemistry , Estrogen Antagonists/toxicity , Female , Fish Proteins/agonists , Fish Proteins/antagonists & inhibitors , Fish Proteins/blood , Fish Proteins/genetics , Gene Expression Regulation, Developmental/drug effects , Hormesis/drug effects , Male , Osmolar Concentration , Perches/growth & development , Reproducibility of Results , Republic of Korea , Sea Bream/growth & development , Species Specificity , Trialkyltin Compounds/toxicity , Vitellogenins/agonists , Vitellogenins/antagonists & inhibitors , Vitellogenins/genetics
15.
Mol Phylogenet Evol ; 125: 163-176, 2018 08.
Article in English | MEDLINE | ID: mdl-29524651

ABSTRACT

The longhorn beetle genus Callipogon Audinet-Serville represents a small group of large wood-boring beetles whose distribution pattern exhibits a unique trans-Pacific disjunction between the East Asian temperate rainforest and the tropical rainforest of the Neotropics. To understand the biogeographic history underlying this circum-Pacific disjunct distribution, we reconstructed a molecular phylogeny of the subfamily Prioninae with extensive sampling of Callipogon using multilocus sequence data of 99 prionine and four parandrine samples (ingroups), together with two distant outgroup species. Our sampling of Callipogon includes 18 of the 24 currently accepted species, with complete representation of all species in our focal subgenera. Our phylogenetic analyses confirmed the purported affinity between the Palearctic Callipogon relictus and its Neotropical congeners. Furthermore, based on molecular dating under the fossilized birth-death (FBD) model with comprehensive fossil records and probabilistic ancestral range reconstructions, we estimated the crown group Callipogon to have originated in the Paleocene circa 60 million years ago (Ma) across the Neotropics and Eastern Palearctics. The divergence between the Palearctic C. relictus and its Neotropical congeners is explained as the result of a vicariance event following the demise of boreotropical forest across Beringia at the Eocene-Oligocene boundary. As C. relictus represents the unique relictual species that evidentiates the lineage's expansive ancient distribution, we evaluated its conservation importance through species distribution modelling. Though we estimated a range expansion for C. relictus by 2050, we emphasize a careful implementation of conservation programs towards the protection of primary forest across its current habitats, as the species remains highly vulnerable to habitat disturbance.


Subject(s)
Coleoptera/genetics , Evolution, Molecular , Rainforest , Animals , Bayes Theorem , Coleoptera/classification , Fossils , Phylogeny , Phylogeography , Species Specificity , Time Factors
16.
PLoS One ; 12(7): e0180418, 2017.
Article in English | MEDLINE | ID: mdl-28678835

ABSTRACT

Myotis rufoniger is a vesper bat in the genus Myotis. Here we report the whole genome sequence and analyses of the M. rufoniger. We generated 124 Gb of short-read DNA sequences with an estimated genome size of 1.88 Gb at a sequencing depth of 66× fold. The sequences were aligned to M. brandtii bat reference genome at a mapping rate of 96.50% covering 95.71% coding sequence region at 10× coverage. The divergence time of Myotis bat family is estimated to be 11.5 million years, and the divergence time between M. rufoniger and its closest species M. davidii is estimated to be 10.4 million years. We found 1,239 function-altering M. rufoniger specific amino acid sequences from 929 genes compared to other Myotis bat and mammalian genomes. The functional enrichment test of the 929 genes detected amino acid changes in melanin associated DCT, SLC45A2, TYRP1, and OCA2 genes possibly responsible for the M. rufoniger's red fur color and a general coloration in Myotis. N6AMT1 gene, associated with arsenic resistance, showed a high degree of function alteration in M. rufoniger. We further confirmed that the M. rufoniger also has bat-specific sequences within FSHB, GHR, IGF1R, TP53, MDM2, SLC45A2, RGS7BP, RHO, OPN1SW, and CNGB3 genes that have already been published to be related to bat's reproduction, lifespan, flight, low vision, and echolocation. Additionally, our demographic history analysis found that the effective population size of Myotis clade has been consistently decreasing since ~30k years ago. M. rufoniger's effective population size was the lowest in Myotis bats, confirming its relatively low genetic diversity.


Subject(s)
Chiroptera/genetics , Genome , Amino Acid Substitution , Animals , Chiroptera/classification , Genetic Variation , Mutation , Phylogeny
17.
Mitochondrial DNA B Resour ; 2(2): 629-631, 2017 Sep 09.
Article in English | MEDLINE | ID: mdl-33473925

ABSTRACT

In the present study, we report the first complete mitochondrial DNA genome of the genus Callipogon based on C. relictus, a natural monument and endangered species in South Korea. The mitogenome is 15,742 base pairs with 13 protein coding genes (PCGs), two rRNAs, 22 tRNAs, and a 1033 bp long AT-rich region. The overall base composition was 67.3% AT and 32.7 GC. Among 13 PCGs, seven genes (Nad2, Atp8, Atp6, Nad4L, Nad6, Cob, Nad1) harbour the typical stop codon TAA or TAG, whereas remaining five genes terminate with T. Interestingly, Cox3 employs AGA as the termination codon.

18.
Anim Cells Syst (Seoul) ; 21(1): 70-75, 2017.
Article in English | MEDLINE | ID: mdl-30460053

ABSTRACT

We examined the influence of tree thinning on the abundance of mammals in a Japanese larch Larix kaempferi plantation in Mt Gariwang, Pyeongchang, South Korea. In 2014 and 2015, from April to October, we recorded the presence of tracks as a proxy for abundance, for the following seven mammalian species: Korean hare Lepus coreanus, raccoon dog Nyctereutes procyonoides, Siberian weasel Mustela sibirica, Eurasian badger Meles meles, water deer Hydropotes inermis, roe deer Capreolus pygargus, and wild boar Sus scrofa. We also assessed how the intensity of tree thinning affected vegetation cover; there were significant differences in number of standing trees, basal area, coverage of vegetation layers, and number and volume of downed trees among the control, moderately thinned, and intensively thinned stands. We found significant differences in the abundance of tracks among the stands for three mammal species. In four mammal species, the abundance of track was significantly correlated with volume of downed trees, coverage of ground vegetation, number of downed trees, and number of standing trees, according to stepwise analysis. The presence and abundance of mammals is linked to habitat variables and forest managers should consider how habitat modifications will affect wildlife.

19.
Arch Environ Contam Toxicol ; 69(3): 340-51, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26264046

ABSTRACT

The potential impact of microplastic to zooplanktivores was assessed by measuring a ratio of neustonic microplastics to zooplankton by abundance in the southern sea of Korea. Neustonic microplastics and zooplankton (0.33-2 mm) were collected using a 330-µm mesh Manta trawl in Geoje eastern Bay and Jinhae Bay before and after the rainy season in 2012 and 2013. The mean microplastic to zooplankton ratios were 0.086 (May) and 0.022 (July) in 2012, and 0.016 (June) and 0.004 (July) in 2013, indicating that zooplanktivores could be more likely to feed on microplastics than natural preys before the rainy season in 2012 and 2013. In particular, the relatively high ratio occurred in a semi-enclosed bay characterized by a shipyard and a beach resort in Geoje Bay, and at stations close to a wastewater treatment plant and an aquaculture facility in Jinhae Bay before the rainy season. Among dominant microplastics and zooplankton before the rainy season, meroplankton of macrobenthos could be confused with paint particles in Geoje Bay, 2012, whereas Styrofoam could be mistaken as immature copepods by predators in Jinhae Bay, 2013. These observations suggest that zooplanktivores could be more likely to feed on microplastics than natural preys around Geoje and Jinhae Bays before the rainy season.


Subject(s)
Environmental Monitoring , Food Chain , Plastics/analysis , Water Pollutants, Chemical/analysis , Zooplankton , Animals , Copepoda , Republic of Korea , Seawater/chemistry
20.
Mar Pollut Bull ; 96(1-2): 304-12, 2015 Jul 15.
Article in English | MEDLINE | ID: mdl-25979811

ABSTRACT

We investigated floating debris around the mouth of the Nakdong River in the Southeastern Sea of Korea using a Manta trawl (330-µm mesh) and hand-net (50 µm) before (May) and after (July) the rainy season in 2012. Microplastic (<2 mm) was present at all of the stations, whereas Styrofoam (2-5 mm) peaked only at a few stations far from the Nakdong River mouth in July. The dominant types were fibers (polyester), hard plastic (polyethylene), paint particles (alkyd), and Styrofoam (expanded polystyrene). The average abundances of fibers and hard plastic (<2 mm) in the trawl were significantly higher in July than in May (p<0.005, p<0.05, respectively), while two orders of magnitude more microplastics (<2 mm) were collected with the hand-net than with the trawl. Fibers and hard plastic by trawl were significantly compared temporally, and the hand-net proved the missed microplastics (50-330 µm) when trawl used.


Subject(s)
Environmental Monitoring , Plastics/analysis , Waste Products/analysis , Water Pollutants/analysis , Republic of Korea , Rivers , Seasons , Waste Products/statistics & numerical data
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