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1.
Curr Microbiol ; 79(6): 187, 2022 May 07.
Article in English | MEDLINE | ID: mdl-35524899

ABSTRACT

Next-generation sequencing (NGS) technology has led to innovations in environmental metagenomics and investigations involving humans and microbes. However, it is necessary to analyze the components that will affect analysis of the method upon processing a large amount of information. In particular, the processing method after sample collection affects the NGS results, and it is necessary to check for inaccurate results. Here, we show that the microbial communities obtained from fingertip samples differ from those obtained from fingertips remaining on mobile phones and desks, when cultured or not for 24 h. We also confirmed changes in microbial communities in fingertip samples from desks incubated for 2, 4, 8, 16, and 24 h. Samples of prints from mobile phones that are considerably vulnerable to external factors were not analyzed. Ratios of Firmicutes and Bacillus were, respectively, increased in cultures at the phylum and species levels. Collectively, we identified bacterial species that can aid in determining whether a sample has been cultured. In addition, although microbial communities differed depending on sample types, we confirmed changes after culture for 4 and 8 h. However, since this study is a sample limited to three types, it is necessary to analyze other types of samples in the same way and check whether they are applicable to all types. This strategy can verify the suitability of samples for deriving informative results from cultured or uncultured bacterial communities.


Subject(s)
Metagenomics , Microbiota , Bacteria/genetics , Firmicutes , High-Throughput Nucleotide Sequencing/methods , Humans , Metagenomics/methods , Microbiota/genetics
2.
Nutrients ; 12(10)2020 Oct 12.
Article in English | MEDLINE | ID: mdl-33053824

ABSTRACT

Synbiotics intake can alter the composition of intestinal microbes beneficially. We aimed to detect the changes in the intestinal microbiomes of 37 healthy elderly Korean women after the intake of a synbiotic drink. This was a longitudinal study controlled with a temporal series, including a control period of 3 weeks before intake, synbiotic intake for 3 weeks, and a washout period of 3 weeks. Fecal microbiota composition was analyzed by sequencing the V3-V4 hypervariable regions of 16S rRNA. Physical fecal activity increased with improvement in fecal shape. Thirty intestinal bacterial taxa were observed to change only after the intake period. In particular, Ellagibacter appeared only after ingestion. In addition, the abundance of Terrisporobacter showed a positive correlation with C-reactive protein, triglyceride. Lachnospiraceae_uc, Eubacterium_g5, and Blautia had a positive correlation with creatinine, whereas PAC001100_g had a negative correlation with creatinine. Short-term (3 weeks) intake of symbiotic organisms changes the composition of the gut microbiota in healthy elderly Korean women.


Subject(s)
Biomarkers/blood , Gastrointestinal Microbiome/physiology , Synbiotics , Aged , Bacteria/classification , Bacteria/genetics , Feces/microbiology , Female , Gastrointestinal Microbiome/genetics , Humans , Intestines/microbiology , Longitudinal Studies , Middle Aged , RNA, Ribosomal, 16S/genetics , Republic of Korea , Women
3.
Microbes Infect ; 22(9): 432-440, 2020 10.
Article in English | MEDLINE | ID: mdl-32569734

ABSTRACT

Klebsiella pneumoniae is an opportunistic pathogenic bacterium that commonly causes pneumonia in elderly people. OmpA, a toxin that is highly expressed in the outer membrane of the bacterium, is one of the primary factors implicated in the pulmonary pathogenesis of K. pneumoniae. To evaluate the associated pyroptosis mechanism of infection, the ompA gene was cloned, and the protein was expressed, extracted, and used to treat human larynx epithelial cells. We observed that OmpA induces reactive oxygen species production and cell-cycle arrest in the G2/M phase in host cells, leading to subsequent apoptosis. Moreover, OmpA was found to induce IL-1ß and IL-18 production in host cells, resulting in caspase-1 activation, which simultaneously stimulated pyroptosis, thus leading to the death of the host cells. We next sought to examine differential gene expression via RNA sequencing to better elucidate the mechanisms associated with these cellular changes, and found that genes associated with these pathways were more highly expressed in OmpA-treated cells than in K. pneumoniae-infected cells. Thus, cell-cycle arrest, apoptosis, and pyroptosis may serve as the primary defenses employed by host cells against OmpA. These results provide novel insights into the host defense against K. pneumoniae infection.


Subject(s)
Apoptosis , Bacterial Outer Membrane Proteins/metabolism , Cell Cycle Checkpoints/physiology , Host-Pathogen Interactions/physiology , Klebsiella Infections/microbiology , Klebsiella pneumoniae/metabolism , Pyroptosis , Bacterial Outer Membrane Proteins/genetics , Bacterial Toxins/genetics , Caspase 1 , Cell Cycle , Cell Line , Cytokines/metabolism , Epithelial Cells , Genes, Bacterial/genetics , Humans , Interleukin-18 , Interleukin-1beta , Klebsiella pneumoniae/genetics , Lung , Pneumonia , Reactive Oxygen Species/metabolism
4.
3 Biotech ; 9(6): 232, 2019 Jun.
Article in English | MEDLINE | ID: mdl-31139547

ABSTRACT

The nuclear localization signal (NLS) marks proteins for transport to the nucleus and is used in various applications in many fields. NLSs are used to achieve efficient and stable transport of biomolecules. Previously, commercial vectors used in NLS studies contained three iterations of the NLS sequence, but these sequences can affect experimental results and alter protein function. Here, we investigated a new vector using a single classical NLS sequence with a mutation in pDsRed2-C1-wt to reduce experimental artifacts. In the newly constructed pDsRed2-C1-1NLS vector, the NLS sequence is placed near the multiple cloning sites of pDsRed2-C1-wt, and the multiple cloning site region was designed to facilitate insertion of the desired gene by site-directed mutagenesis. Fluorescent protein expression in the nucleus can be visually confirmed. The results show that the fluorescent protein was bound to the transport protein. The constructed vector had a cell survival rate of 89-95% and a transfection efficiency of 39-56% when introduced into animal cells, which are similar to those of other NLS vectors. Additionally, the constructed NLS vector can be used to demonstrate complementary binding between target proteins, and that the target protein is transported by the NLS transport system. Especially, we show that the vector can be useful for experiments involving the S100A10 gene. In addition, the constructed vector is useful for studies of genes and proteins that show potential for gene therapy or drug delivery applications.

5.
J Microbiol Methods ; 161: 12-17, 2019 06.
Article in English | MEDLINE | ID: mdl-31004622

ABSTRACT

Determination of the metagenome has become an important component of forensic identification, which requires efficient environmental sampling techniques. Therefore, in this study, we compared the efficiency of sample collection using swabbing with cotton swabs and three types of medical swabs (S7, S22, S24) along with three different solutions: phosphate-buffered saline (PBS), 1% Tween 20 + 1% glycerol in PBS (TG), and GS commercial solution (Noble Bio, Hwaseong, Republic of Korea). Combinations of the three solutions with the three types of swabs were tested at different volumes (cotton swab, S7: 0, 30, 50, 70 µL; S22, S24: 0, 70, 100, 130 µL). Escherichia coli and Staphylococcus aureus were selected as representative environmental microbial samples, and the number of colony-forming units (CFUs), DNA concentration, and DNA copy numbers were compared across groups. The sampling process had a clear effect on the efficiency of extraction, which allowed for determination of a more efficient sample sampling method. In particular, cotton swabs showed 2-10-fold greater CFUs of both species than the medical swabs, and resulted in significantly greater amounts of extracted DNA. TG was found to be the most efficient solution for bacterial DNA extraction, with higher CFUs and DNA obtained than with the other three solutions at all volumes tested. This study highlights the need for a standardized sampling method that can be applied to all environmental samples, especially for microbial quantification, and provides valuable reference data for the efficient collection of environmental samples for metagenomic analyses in microbial-based forensic assessments.


Subject(s)
DNA, Bacterial/analysis , Metagenomics/methods , Specimen Handling/methods , Colony Count, Microbial , DNA Copy Number Variations , Escherichia coli , Metagenome , Republic of Korea , Specimen Handling/instrumentation , Staphylococcus aureus
6.
Indian J Microbiol ; 59(2): 241-245, 2019 Jun.
Article in English | MEDLINE | ID: mdl-31031441

ABSTRACT

We investigated alterations in the expression of immune-related genes in epithelial cells and mast cells treated with outer membrane vesicles (OMVs) derived from Klebsiella pneumoniae (KpOMVs). Previous studies have shown that OMVs contain substances that enable their delivery to host cells and induce an immune response. Our results indicate an increase in expression of genes such as IL-8, IL-1b, MIP-1α, HMOX1, HSPA1A, and IL-24 in epithelial cells and mast cells treated with KpOMVs. The pathogenicity of KpOMVs was confirmed by measuring the changes in the expression of these immune-related genes.

7.
PLoS One ; 10(6): e0127784, 2015.
Article in English | MEDLINE | ID: mdl-26052940

ABSTRACT

Uncoordinated 51-like kinase 2 (ULK2), a member of the serine/threonine kinase family, plays an essential role in the regulation of autophagy in mammalian cells. Given the role of autophagy in normal cellular homeostasis and in multiple diseases, improved mechanistic insight into this process may result in the development of novel therapeutic approaches. Here, we present evidence that ULK2 associates with karyopherin beta 2 (Kapß2) for its transportation into the nucleus. We identify a potential PY-NLS motif ((774)gpgfgssppGaeaapslRyvPY(795)) in the S/P space domain of ULK2, which is similar to the consensus PY-NLS motif (R/K/H)X(2-5)PY. Using a pull-down approach, we observe that ULK2 interacts physically with Kapß2 both in vitro and in vivo. Confocal microscopy confirmed the co-localization of ULK2 and Kapß2. Localization of ULK2 to the nuclear region was disrupted by mutations in the putative Kapß2-binding motif (P794A). Furthermore, in transient transfection assays, the presence of the Kapß2 binding site mutant (the cytoplasmic localization form) was associated with a substantial increase in autophagy activity (but a decrease in the in vitro serine-phosphorylation) compared with the wild type ULK2. Mutational analysis showed that the phosphorylation on the Ser1027 residue of ULK2 by Protein Kinase A (PKA) is the regulatory point for its functional dissociation from Atg13 and FIP 200, nuclear localization, and autophagy. Taken together, our observations indicate that Kapß2 interacts with ULK2 through ULK2's putative PY-NLS motif, and facilitates transport from the cytoplasm to the nucleus, depending on its Ser1027 residue phosphorylation by PKA, thereby reducing autophagic activity.


Subject(s)
Cell Nucleus/metabolism , Cyclic AMP-Dependent Protein Kinases/metabolism , Phosphoserine/metabolism , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/metabolism , beta Karyopherins/metabolism , Adaptor Proteins, Signal Transducing/metabolism , Amino Acid Motifs , Amino Acid Sequence , Autophagy , Autophagy-Related Proteins , Cell Survival , HEK293 Cells , Humans , Models, Biological , Molecular Sequence Data , Mutant Proteins/metabolism , Nuclear Localization Signals/metabolism , Phosphorylation , Protein Binding , Protein Transport , Protein-Tyrosine Kinases/metabolism , Subcellular Fractions/metabolism
8.
Dev Comp Immunol ; 51(1): 88-98, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25727880

ABSTRACT

Macroautophagy (hereinafter called autophagy) is a highly regulated process used by eukaryotic cells to digest portions of the cytoplasm that remodels and recycles nutrients and disposes of unwanted cytoplasmic constituents. Currently 36 autophagy-related genes (ATG) and their homologs have been characterized in yeast and higher eukaryotes, including insects. In the present study, we identified and functionally characterized the immune function of an ATG8 homolog in a coleopteran insect, Tenebrio molitor (TmATG8). The cDNA of TmATG8 comprises of an ORF of 363 bp that encodes a protein of 120 amino acid residues. TmATG8 transcripts are detected in all the developmental stages analyzed. TmAtg8 protein contains a highly conserved C-terminal glycine residue (Gly116) and shows high amino acid sequence identity (98%) to its Tribolium castaneum homolog, TcAtg8. Loss of function of TmATG8 by RNAi led to a significant increase in the mortality rates of T. molitor larvae against Listeria monocytogenes. Unlike dsEGFP-treated control larvae, TmATG8-silenced larvae failed to turn-on autophagy in hemocytes after injection with L. monocytogenes. These data suggest that TmATG8 play a role in mediating autophagy-based clearance of Listeria in T. molitor.


Subject(s)
Hemocytes/physiology , Listeria monocytogenes/immunology , Listeriosis/immunology , Microfilament Proteins/metabolism , Tenebrio/immunology , Adaptor Proteins, Signal Transducing/genetics , Amino Acid Sequence , Animals , Autophagy/genetics , Autophagy-Related Protein 8 Family , Bacterial Load/genetics , Cloning, Molecular , Hemocytes/microbiology , Microfilament Proteins/genetics , Molecular Sequence Data , RNA, Small Interfering/genetics , Sequence Alignment , Sequence Homology, Amino Acid
9.
Open Biochem J ; 7: 66-72, 2013.
Article in English | MEDLINE | ID: mdl-24044023

ABSTRACT

The transfer of acetyl groups from acetyl coenzyme A to the ε amino group of internal lysine residues is catalyzed by Tip60, which is in the MYST family of nuclear histone acetyltransferases (HATs). The tyrosine phosphorylation of Tip60 seems to be a unique modification. We present evidence that Tip60 is modified on tyrosine 327 by Abl kinase. We show that this causes functional changes in HAT activity and the subcellular localization of TIP60, which forms a complex with Abl kinase. The Tip60 mutation Y327F abolished tyrosine phosphorylation, reduced the inhibition of Tip60 HAT activity, and caused G0-G1 arrest and association with FE65. Thus, our findings for the first time suggested a novel regulation mechanism of Tip60. Regulation was through phosphorylation of tyrosine 327 by Abl tyrosine kinase and depended on environmental conditions, suggesting that the tyrosine residue of Tip60 is important for the activation process.

10.
Exp Mol Med ; 44(12): 707-22, 2012 Dec 31.
Article in English | MEDLINE | ID: mdl-23143559

ABSTRACT

The transient receptor potential vanilloid 4 (TRPV4) cation channel, a member of the TRP vanilloid subfamily, is expressed in a broad range of tissues where it participates in the generation of Ca²âº signals and/or depolarization of the membrane potential. Regulation of TRPV4 abundance at the cell surface is critical for osmo- and mechanotransduction. Defects in TRPV4 are the cause of several human diseases, including brachyolmia type 3 (MIM:113500) (also known as brachyrachia or spondylometaphyseal dysplasia Kozlowski type [MIM:118452]), and metatropic dysplasia (MIM:156530) (also called metatropic dwarfism or parastremmatic dwarfism [MIM:168400]). These bone dysplasia mutants are characterized by severe dwarfism, kyphoscoliosis, distortion and bowing of the extremities, and contractures of the large joints. These diseases are characterized by a combination of decreased bone density, bowing of the long bones, platyspondyly, and striking irregularities of endochondral ossification with areas of calcific stippling and streaking in radiolucent epiphyses, metaphyses, and apophyses. In this review, we discuss the potential effect of the mutation on the regulation of TRPV4 functions, which are related to human diseases through deviated function. In particular, we emphasize how the constitutive active TRPV4 mutant affects endochondral ossification with a reduced number of hypertrophic chondrocytes and the presence of cartilage islands within the zone of primary mineralization. In addition, we summarize current knowledge about the role of TRPV4 in the pathogenesis of several diseases.


Subject(s)
Mutation , Osteochondrodysplasias/genetics , TRPV Cation Channels/genetics , Humans , Osteogenesis/genetics , TRPV Cation Channels/chemistry , TRPV Cation Channels/metabolism
11.
Mol Cells ; 34(4): 375-82, 2012 Oct.
Article in English | MEDLINE | ID: mdl-23104438

ABSTRACT

Glycogen synthase kinase-3ß(GSK-3ß), which is a member of the serine/threonine kinase family, has been shown to be crucial for cellular survival, differentiation, and metabolism. Here, we present evidence that GSK-3ß is associated with the karyopherin ß2 (Kap ß2) (102-kDa), which functions as a substrate for transportation into the nucleus. A potential PY-NLS motif ((109)IVRLRYFFY(117)) was observed, which is similar with the consensus PY NLS motif (R/K/H)X(2-5)PY in the GSK-3ß catalytic domain. Using a pull down approach, we observed that GSK-3ß physically interacts with Kap ß2 both in vivo and in vitro. Secondly, GSK-3ß and Kap ß2 were shown to be co-localized by confocal microscopy. The localization of GSK-3ß to the nuclear region was disrupted by putative Kap ß2 binding site mutation. Furthermore, in transient transfection assays, the Kap ß2 binding site mutant induced a substantial reduction in the in vivo serine/threonine phosphorylation of GSK-3ß, where- as the GSK-3ß wild type did not. Thus, our observations indicated that Kap ß2 imports GSK-3ß through its putative PY NLS motif from the cytoplasm to the nucleus and increases its kinase activity.


Subject(s)
Cell Nucleus/enzymology , Glycogen Synthase Kinase 3/chemistry , Glycogen Synthase Kinase 3/metabolism , Nuclear Localization Signals/metabolism , Amino Acid Motifs , Amino Acid Sequence , Cell Survival , Enzyme Stability , Glycogen Synthase Kinase 3 beta , HEK293 Cells , Humans , Molecular Sequence Data , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Nuclear Localization Signals/chemistry , Phosphorylation , Phosphoserine/metabolism , Phosphotyrosine/metabolism , Protein Binding , Protein Transport , Structure-Activity Relationship , Subcellular Fractions/enzymology , beta Karyopherins/metabolism
12.
Cell Signal ; 24(10): 1918-22, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22735813

ABSTRACT

The transient receptor potential vanilloid 4 (TRPV4) cation channel, a member of the TRP vanilloid subfamily, is expressed in a broad range of tissues where it participates in the generation of a Ca(2+) signal and/or depolarization of the membrane potential. Regulation of the abundance of TRPV4 at the cell surface is critical in osmo- and mechanotransduction. In this review, we discussed that the potential effect of Ca(2+) occurs via its action at an intracellular site in the C-terminus of the channel protein by the effect of the modulation on TRPV4 (such as 824 Ser residue phosphorylation), and its regulation for TRPV4 functions related with cell surface spread, wound healing or its polarity reorientation through its differential affinity with actin or tubulin.


Subject(s)
Calcium/metabolism , TRPV Cation Channels/chemistry , TRPV Cation Channels/metabolism , Amino Acid Sequence , Animals , Humans , Molecular Sequence Data , Phosphorylation , Protein Structure, Tertiary
13.
Open Biochem J ; 6: 1-10, 2012.
Article in English | MEDLINE | ID: mdl-22448206

ABSTRACT

Herein, we report that the concanavalin A binding of Tip60 (a target of the human immunodeficiency virus type 1-encoded transactivator Tat interacting protein 60 KD; a histone acetyltransferase; HAT) is enhanced as the result of endoplasmic reticulum (ER) stress. The cell expression of Tip60 combined with site-directed mutagenesis analysis was used to identify the glutamine 324 residue as the lecithin binding (Concanavalin A; Con A) site. The Tip60 N324A mutant strain, which seems to be the Con A binding-deficient, was attenuated the protein-protein interactions with FE65 and its protein stability, but its ability of G0-G1 cell cycle arrest was not interrupted. Interestingly, both HAT activity and the nuclear localization of Tip60 N324A mutant were enhanced than those of Tip60 WT. Thus, our results indicate that the Con A binding deficient of Tip60 seems to be one of the most pivotal posttranslational modifications (such as N-glycosylation) for its functional regulation signal, which is generated in response to ER stress.

14.
FEMS Microbiol Lett ; 331(1): 17-24, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22428779

ABSTRACT

Outer membrane vesicles (OMVs) derived from pathogenic Gram-negative bacteria are an important vehicle for delivery of effector molecules to host cells, but the production of OMVs from Klebsiella pneumoniae, an opportunistic pathogen of both nosocomial and community-acquired infections, and their role in bacterial pathogenesis have not yet been determined. In the present study, we examined the production of OMVs from K. pneumoniae and determined the induction of the innate immune response against K. pneumoniae OMVs. Klebsiella pneumoniae ATCC 13883 produced and secreted OMVs during in vitro culture. Proteomic analysis revealed that 159 different proteins were associated with K. pneumoniae OMVs. Klebsiella pneumoniae OMVs did not inhibit cell growth or induce cell death. However, these vesicles induced expression of proinflammatory cytokine genes such as interleukin (IL)-1ß and IL-8 in epithelial cells. An intratracheal challenge of K. pneumoniae OMVs in neutropenic mice resulted in severe lung pathology similar to K. pneumoniae infection. In conclusion, K. pneumoniae produces OMVs like other pathogenic Gram-negative bacteria and K. pneumoniae OMVs are a molecular complex that induces the innate immune response.


Subject(s)
Exosomes/immunology , Exosomes/metabolism , Immunity, Innate , Klebsiella pneumoniae/immunology , Klebsiella pneumoniae/metabolism , Animals , Bacterial Proteins/analysis , Cytokines/biosynthesis , Epithelial Cells/immunology , Exosomes/chemistry , Female , Gene Expression Profiling , Histocytochemistry , Lung/pathology , Mice , Mice, Inbred BALB C , Microscopy , Pneumonia/chemically induced , Pneumonia/pathology , Proteome/analysis
15.
Cell Signal ; 24(3): 641-51, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22101010

ABSTRACT

Previously, we demonstrated that the transient receptor potential vanilloid 4 (TRPV4) cation channel, a member of the TRP vanilloid subfamily, is one of the serum glucocorticoid-induced protein kinase1 (SGK1) authentic substrate proteins, and that the Ser 824 residue of TRPV4 is phosphorylated by SGK1. In this study, we demonstrated that phosphorylation on the Ser 824 residue of TRPV4 is required for its interaction with F-actin, using TRPV4 mutants (S824D; a phospho-mimicking TRPV4 mutant and S824A; a non-phosphorylatable TRPV4 mutant) and its proper subcellular localization. Additionally, we noted that the phosphorylation of the Ser824 residue promotes its single channel activity, Ca(2+) influx, protein stability, and cell surface area (expansion of plasma membrane).


Subject(s)
Actins/metabolism , Microtubules/metabolism , TRPV Cation Channels/metabolism , Amino Acid Sequence , Amino Acid Substitution , Calcium/metabolism , Cell Line , Cell Survival , Humans , Molecular Sequence Data , Mutagenesis, Site-Directed , Phorbol Esters/pharmacology , Phosphorylation , Protein Binding , Serine/metabolism , TRPV Cation Channels/genetics
16.
Anim Cells Syst (Seoul) ; 15(2): 95-106, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21837266

ABSTRACT

The transient receptor potential vanilloid 4 (TRPV4) cation channel, a member of the TRP vanilloid subfamily, is expressed in a broad range of tissues. Nitric oxide (NO) as a gaseous signal mediator shows a variety of important biological effects. In many instances, NO has been shown to exhibit its activities via a protein S-nitrosylation mechanism in order to regulate its protein functions. With functional assays via site-directed mutagenesis, we demonstrate herein that NO induces the S-nitrosylation of TRPV4 Ca(2+) channel on the Cys(853) residue, and the S-nitrosylation of Cys(853) reduced its channel sensitivity to 4-α phorbol 12,13-didecanoate and the interaction between TRPV4 and calmodulin. A patch clamp experiment and Ca(2+) image analysis show that the S-nitrosylation of Cys(853) modulates the TRPV4 channel as an inhibitor. Thus, our data suggest a novel regulatory mechanism of TRPV4 via NO-mediated S-nitrosylation on its Cys(853) residue.

17.
Arch Microbiol ; 193(12): 845-56, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21688029

ABSTRACT

Streptomyces coelicolor, the model species for morphologically complex actinomycete bacteria, has unique characteristics such as morphological and physiological differentiation, which are controlled by various factors and several protein kinases. From the whole genomic sequence of S. coelicolor A3(2), 44 putative serine/threonine (Ser/Thr) protein kinases were identified, and the pkaF gene was chosen as the best-conserved protein for typical Ser/Thr protein kinases. pkaF encodes a 667-amino acid protein with a predicted N-terminal Ser/Thr kinase domain and four repeated C-terminal penicillin-binding domains and Ser/Thr kinase-associated (PASTA) domains. Based on PCR, a pkaF gene was cloned and heterologously expressed. PkaF expressed in Escherichia coli had the bigger molecular size than the expected value (75 kDa) and was further purified by Ni2+-NTA agarose affinity column chromatography to homogeneity. The purified PkaF was autophosphorylated through the transfer of the γ-phosphate group of ATP. The extent of phosphorylation was proportional to the amount of PkaF, and the phospho-PkaF was dephosphorylated by the addition of the cell lysate of S. coelicolor A3(2). Although no change was observed in the pkaF disruptant, overexpression of pkaF induced severe repression of morphogenesis and actinorhodin production, but not undecylprodigiosin production, implying that PkaF specifically regulates morphogenesis and actinorhodin production in S. coelicolor.


Subject(s)
Bacterial Proteins/chemistry , Protein Serine-Threonine Kinases/chemistry , Streptomyces coelicolor/enzymology , Amino Acid Sequence , Anthraquinones/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Mass Spectrometry , Molecular Sequence Data , Phosphorylation , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Streptomyces coelicolor/genetics
18.
J Microbiol ; 47(5): 641-5, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19851738

ABSTRACT

Nuclear targeting of bacterial proteins is an emerging pathogenic mechanism whereby bacterial proteins can interact with nuclear molecules and alter the physiology of host cells. The fully sequenced bacterial genome can predict proteins that target the nuclei of host cells based on the presence of nuclear localization signal (NLS). In the present study, we predicted bacterial proteins with the NLS sequences from Klebsiella pneumoniae by bioinformatic analysis, and 13 proteins were identified as carrying putative NLS sequences. Among them, HsdM, a subunit of KpnAl that is a type I restriction-modification system found in K. pneumoniae, was selected for the experimental proof of nuclear targeting in host cells. HsdM carried the NLS sequences, (7)KKAKAKK(13), in the N-terminus. A transient expression of HsdM-EGFP in COS-1 cells exhibited exclusively a nuclear localization of the fusion proteins, whereas the fusion proteins of HsdM with substitutions in residues lysine to alanine in the NLS sequences, (7)AAAKAAA(13), were localized in the cytoplasm. HsdM was co-localized with importin o in the nuclei of host cells. Recombinant HsdM alone methylated the eukaryotic DNA in vitro assay. Although HsdM tested in this study has not been considered to be a virulence factor, the prediction of NLS motifs from the full sequenced genome of bacteria extends our knowledge of functional genomics to understand subcellular targeting of bacterial proteins.


Subject(s)
Bacterial Proteins/genetics , Cell Nucleus/chemistry , DNA Restriction-Modification Enzymes/analysis , Klebsiella pneumoniae/genetics , Klebsiella pneumoniae/pathogenicity , Nuclear Localization Signals , Bacterial Proteins/analysis , Computational Biology/methods , DNA Restriction-Modification Enzymes/genetics , Genes, Bacterial , Genes, Reporter , Genome, Bacterial , Green Fluorescent Proteins/analysis , Green Fluorescent Proteins/genetics , Humans , Karyopherins/analysis , Recombinant Fusion Proteins/analysis , Recombinant Fusion Proteins/genetics
19.
Exp Mol Med ; 41(8): 555-68, 2009 Aug 31.
Article in English | MEDLINE | ID: mdl-19381069

ABSTRACT

Fe65 has been characterized as an adaptor protein, originally identified as an expressed sequence tag (EST) corresponding to an mRNA expressed at high levels in the rat brain. It contains one WW domain and two phosphotyrosine interaction/phosphotyrosine binding domains (PID1/PID2). As the neuronal precursor cell expressed developmentally down regulated 4-2 (Nedd4-2) has a putative WW domain binding motif ((72)PPLP(75)) in the N-terminal domain, we hypothesized that Fe65 associates with Nedd4-2 through a WW domain interaction, which has the characteristics of E3 ubiquitin-protein ligase. In this paper, we present evidence for the interaction between Fe65 WW domain and Nedd4-2 through its specific motif, using a pull down approach and co-immunoprecipitation. Additionally, the co-localization of Fe65 and Nedd4-2 were observed via confocal microscopy. Co-localization of Fe65 and Nedd4-2 was disrupted by either the mutation of Fe65 WW domain or its putative binding motif of Nedd4-2. When the ubiquitin assay was performed, the interaction of Nedd4-2 (wt) with Fe65 is required for the cell apoptosis and the ubiquitylation of Fe65. We also observed that the ubiquitylation of Fe65 (wt) was augmented depending on Nedd4-2 expression levels, whereas the Fe65 WW domain mutant (W243KP245K) or the Nedd4-2 AL mutant ((72)PPLP(75) was changed to (72)APLA(75)) was under-ubiquitinated significantly. Thus, our observations implicated that the protein-protein interaction between the WW domain of Fe65 and the putative binding motif of Nedd4-2 down-regulates Fe65 protein stability and subcellular localization through its ubiquitylation, to contribute cell apoptosis.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Down-Regulation , Endosomal Sorting Complexes Required for Transport/metabolism , Gene Expression Regulation, Developmental , Protein Structure, Tertiary/physiology , Ubiquitin-Protein Ligases/metabolism , Adaptor Proteins, Signal Transducing/chemistry , Adaptor Proteins, Signal Transducing/genetics , Cell Line , Endosomal Sorting Complexes Required for Transport/genetics , Humans , Immunoprecipitation , Microscopy, Confocal , Mutation , Nedd4 Ubiquitin Protein Ligases , Protein Interaction Mapping , Transfection , Ubiquitin-Protein Ligases/genetics , Ubiquitination
20.
J Endocrinol ; 198(3): 549-60, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18593820

ABSTRACT

The present study was undertaken to determine how tumour necrosis factor-alpha (TNF-alpha) elicits the inhibition of glucose-stimulated insulin secretion (GSIS) in rat insulinoma cells (INS)-1 beta-cells. TNF-alpha pretreatment did not change the expression levels of insulin, PDX-1, glucose transporter 2, glucokinase, K(ATP) channels, Ca(2)(+) channels, and exocytotic molecules and, furthermore, did not reduce the glucose-stimulated ATP level. On the other hand, TNF-alpha reduced the glucose-stimulated influx of Ca(2)(+). The TNF-alpha treatment was thought to activate c-Jun N-terminal kinase (JNK), p38 mitogen-activated protein kinase (MAPK), and NF-kappaB inflammatory signals, since TNF-alpha increased phospho-JNK and phospho-p38 and reduced I kappaB levels. Inhibitors of these signaling pathways prevented the TNF-alpha-induced reduction of the Ca(2)(+) influx and GSIS. Overexpression of MEKK3, a possible mediator from the TNF-alpha receptor to the JNK/p38 and NK-kappaB signaling cascade, increased the levels of phospho-JNK, phospho-p38, and NF-kappaB, and reduced the glucose-stimulated Ca(2)(+) influx and GSIS. The reduction of the Ca(2)(+) influx and GSIS in MEKK3-overexpressing INS-1 cells was also prevented by inhibitors of JNK, p38, and NF-kappaB. These data demonstrate that TNF-alpha inhibits GSIS by reducing the glucose-stimulated Ca(2)(+) influx, possibly through the activation of JNK and p38 MAPK and NF-kappaB inflammatory signals. Thus, our findings suggest that the activation of stress and inflammatory signals can contribute to the inhibition of GSIS in the development of diabetes.


Subject(s)
Biological Transport/drug effects , Calcium/metabolism , Glucose/pharmacology , Insulin/metabolism , Tumor Necrosis Factor-alpha/pharmacology , ATP-Binding Cassette Transporters/genetics , Adenosine Triphosphate/metabolism , Animals , Calcium Channels/genetics , Cell Line, Tumor , Cell Survival/drug effects , Gene Expression/drug effects , Glucokinase/genetics , Glucose Transporter Type 2/genetics , Homeodomain Proteins/genetics , Immunoblotting , Insulin Secretion , Insulinoma , JNK Mitogen-Activated Protein Kinases/antagonists & inhibitors , JNK Mitogen-Activated Protein Kinases/metabolism , MAP Kinase Kinase Kinase 3/genetics , MAP Kinase Kinase Kinase 3/physiology , NF-kappa B/antagonists & inhibitors , NF-kappa B/metabolism , Nitric Oxide Synthase Type II/genetics , Potassium Channels, Inwardly Rectifying/genetics , Radioimmunoassay , Rats , Receptors, Drug/genetics , Reverse Transcriptase Polymerase Chain Reaction , Sulfonylurea Receptors , Trans-Activators/genetics , p38 Mitogen-Activated Protein Kinases/antagonists & inhibitors , p38 Mitogen-Activated Protein Kinases/metabolism
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