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1.
J Comput Chem ; 29(14): 2382-96, 2008 Nov 15.
Article in English | MEDLINE | ID: mdl-18452127

ABSTRACT

The catalytic efficiency of Fe(+) ion over the CO(2) decomposition in the gas phase has been extensively investigated with the help of electronic structure calculation methods. Potential-energy profiles for the activation process Fe(+) + CO(2) --> CO + FeO(+) along two rival potential reaction paths, namely the insertion and addition pathways, originating from the end-on kappa(1)-O and kappa(2)-O,O coordination modes of CO(2) with the metal ion, respectively, have been explored by DFT calculations. For each pathway the potential energy surfaces of the high-spin sextet (S = 5/2) and the intermediate-spin quartet (S = 3/2) spin-states have been explored. The complete energy reaction profile calculated by a combination of ab initio and density functional theory (DFT) computational techniques reveals a two-state reactivity, involving two spin inversions, for the decomposition process and accounts well for the experimentally observed inertness of bare Fe(+) ions towards CO(2) activation. Furthermore, the coordination of up to three extra ancillary NH(3) ligands with the Fe(+) metal ion has been explored and the geometric and energetic reaction profiles of the CO(2) activation processes Fe(+) + n x NH(3) + CO(2) --> [Fe(NH(3))(n)(CO(2))](+) --> [Fe(NH(3))(n)(O)(CO)](+) --> CO + [Fe(O)(NH(3))(n)](+) (n = 1, 2 or 3) have thoroughly been scrutinized for both the insertion and the addition mechanisms. Inter alia, the geometries and energies of the various states of the [Fe(NH(3))(n)(CO(2))](+) and [Fe(NH(3))(n)(O)(CO)](+) complexes are explored and compared. Finally, a detailed analysis of the coordination modes of CO(2) in the cationic [Fe(NH(3))(n)(CO(2))](+) (n = 0, 1, 2 and 3) complexes is presented.

2.
J Phys Chem A ; 110(37): 10899-903, 2006 Sep 21.
Article in English | MEDLINE | ID: mdl-16970387

ABSTRACT

The HZnCl molecule has recently been observed both in the gas phase and in argon matrixes, and the complexity of its spectrum has created big discrepancies between experimental and theoretically predicted Zn-H bond distances. In an attempt to resolve the questionable H-ZnCl bond length issue, as well as to study its stability relative to bond breakage, we have investigated at a very high ab initio level its geometric and energetic parameters. At the coupled cluster level of theory [CCSD(T)] with the new correlation-consistent basis sets for Zn by Balabanov and Peterson, and with the inclusion of core/valence and one-electron Douglas-Kroll-Hess relativistic effects, the basis set extrapolated H-ZnCl and HZn-Cl bond lengths have been calculated to be 1.499 and 2.079 A, compared with the experimental estimates of 1.596-1.789 and 2.08346 A, respectively. With the same procedure, the experimentally unknown bond length of ground-state ZnCl has been found to be equal to 2.122 A. As in the free diatomics ZnCl and ZnH, the HZn-Cl bond is stronger than the H-ZnCl bond by about 30 kcal/mol.

3.
J Phys Chem A ; 109(38): 8560-7, 2005 Sep 29.
Article in English | MEDLINE | ID: mdl-16834254

ABSTRACT

The mechanism of the noncatalyzed and reagent-catalyzed Bazarov synthesis of urea has extensively been investigated in the gas phase by means of density functional (B3LYP/6-31G(d,p)) and high quality ab initio (CBS-QB3) computational techniques. It was found that the first step of urea formation from NH3(g) and CO2(g) corresponds to a simple addition reaction leading to the carbamic acid intermediate, a process being slightly endothermic. Among the three possible reaction mechanisms considered, the addition-elimination-addition (AEA) and the double addition-elimination (DAE) mechanisms are almost equally favored, while the concerted (C) one was predicted kinetically forbidden. The second step involves the formation of loose adducts between NH3 and carbamic acid corresponding to an ammonium carbamate intermediate, which subsequently dehydrates to urea. The formation of "ammonium carbamate" corresponds to an almost thermoneutral process, whereas its dehydration, which is the rate-determining step, is highly endothermic. The Bazarov synthesis of urea is strongly assisted by the active participation of extra NH3 or H2O molecules (autocatalysis). For all reaction pathways studied the entire geometric and energetic profiles were computed and thoroughly analyzed. The reaction scheme described herein can be related with the formation of both isocyanic acid, H-N=C=O, and carbamic acid, H2N-COOH, as key intermediates in the initial formation of organic molecules, such as urea, under prebiotic conditions.


Subject(s)
Ammonia/chemistry , Carbon Dioxide/chemistry , Computer Simulation , Models, Chemical , Urea/chemical synthesis , Catalysis , Electrons , Hydrolysis , Hydrophobic and Hydrophilic Interactions , Urea/chemistry
4.
J Am Chem Soc ; 125(8): 2307-18, 2003 Feb 26.
Article in English | MEDLINE | ID: mdl-12590561

ABSTRACT

The detailed reaction pathways for the ammonium cyanate transformation into urea (Wöhler's reaction) in the gas phase, in solution, and in the solid state have exhaustively been explored by means of first-principles quantum chemical calculations at the B3LYP level of theory using the 6-31G(d,p) basis set. This serendipitous synthesis of urea is predicted to proceed in two steps; the first step involves the decomposition of the ammonium cyanate to ammonia and isocyanic or cyanic acid, and the second one, which is the main reaction step (and probably the rate-determining step), involves the interaction of NH(3) with either isocyanic or cyanic acid. Several alternative pathways were envisaged for the main reaction step of Wöhler's reaction in a vacuum involving the formation of "four-center" transition states. Modeling Wöhler's reaction in aqueous solution and in the solid state, it was found that the addition of NH(3) to both acids is assisted (autocatalyzed) by the active participation of extra H(2)O and/or NH(3) molecules, through a preassociative, cooperative, and hydrogen-transfer relay mechanism involving the formation of "six-center" or even "eight-center" transition states. The most energetically economic path of the rate-determining step of Wöhler's reaction is that of the addition of NH(3) to the C=N double bond of isocyanic acid, directly affording urea. An alternative pathway corresponding to the anti-addition of ammonia to the Ctbd1;N triple bond of cyanic acid, yielding urea's tautomer HN=C(OH)NH(2), seems to be another possibility. In the last case, urea is formed through a prototropic tautomerization of its enolic form. The energies of the reactants, products, and all intermediates along with the barrier heights for each reaction path have been calculated at the B3LYP/6-31G(d,p) level of theory. The geometry optimization and characterization of all of the stationary points found on the potential energy hypersurfaces was performed at the same level of theory.


Subject(s)
Urea/chemistry , Ammonia/chemistry , Catalysis , Cyanates/chemistry , Models, Molecular , Quantum Theory , Thermodynamics , Urea/chemical synthesis
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