Reviving ghost alleles: Genetically admixed coyotes along the American Gulf Coast are critical for saving the endangered red wolf.

The last known red wolves were captured in southwestern Louisiana and eastern Texas in 1980 to establish a captive breeding population. Before their extirpation, gene flow with coyotes resulted in the persistence of endangered red wolf genetic variation in local coyote populations. We assessed genomic ancestry and morphology of coyotes in southwestern Louisiana. We detected that 38 to 62% of the coyote genomes contained red wolf ancestry acquired in the past 30 years and have an admixture profile similar to that of the canids captured before the extirpation of red wolves. We further documented a positive correlation between ancestry and weight. Our findings highlight the importance of hybrids and admixed genomes as a reservoir of endangered species ancestry for innovative conservation efforts. Together, this work presents an unprecedented system that conservation can leverage to enrich the recovery program of an endangered species.

Geographic patterns in morphometric and genetic variation for coyote populations with emphasis on southeastern coyotes.

Prior to 1900, coyotes (Canis latrans) were restricted to the western and central regions of North America, but by the early 2000s, coyotes became ubiquitous throughout the eastern United States. Information regarding morphological and genetic structure of coyote populations in the southeastern United States is limited, and where data exist, they are rarely compared to those from other regions of North America. We assessed geographic patterns in morphology and genetics of coyotes with special consideration of coyotes in the southeastern United States. Mean body mass of coyote populations increased along a west-to-east gradient, with southeastern coyotes being intermediate to western and northeastern coyotes. Similarly, principal component analysis of body mass and linear body measurements suggested that southeastern coyotes were intermediate to western and northeastern coyotes in body size but exhibited shorter tails and ears from other populations. Genetic analyses indicated that southeastern coyotes represented a distinct genetic cluster that differentiated strongly from western and northeastern coyotes. We postulate that southeastern coyotes experienced lower immigration from western populations than did northeastern coyotes, and over time, genetically diverged from both western and northeastern populations. Coyotes colonizing eastern North America experienced different selective pressures than did stable populations in the core range, and we offer that the larger body size of eastern coyotes reflects an adaptation that improved dispersal capabilities of individuals in the expanding range.

Home range size, vegetation density, and season influences prey use by coyotes (Canis latrans).

To ensure reproductive success, Canis species establish contiguous mosaics of territories in suitable habitats to partition space and defend limiting resources. Consequently, Canis species can exert strong effects on prey populations locally because of their year-round maintenance of territories. We assessed prey use by coyotes (Canis latrans) by sampling scats from within known territories in southeastern Alabama and the Savannah River area of Georgia and South Carolina. We accounted for the size and habitat composition of coyote home ranges to investigate the influence of space use, vegetation density, and habitat type on coyote diets. Coyote use of prey was influenced by a combination of mean monthly temperature, home range size, vegetation density, and hardwood forests. For example, coyote use of adult white-tailed deer (Odocoileus virginianus) was associated with cooler months and smaller home ranges, whereas use of rabbits (Sylvilagus spp.) was associated with cooler months, larger home ranges, and less vegetation density. Coyotes in our study relied primarily on nutritionally superior mammalian prey and supplemented their diet with fruit when available, as their use of mammalian prey did not appreciably decrease with increasing use of fruit. We suggest that differential use of prey by coyotes is influenced by habitat heterogeneity within their home ranges, and prey-switching behaviors may stabilize local interactions between coyotes and their food resources to permit stable year-round territories. Given that habitat composition affects coyote prey use, future studies should also incorporate effects of habitat composition on coyote distribution and abundance to further identify coyote influences on prey communities.