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1.
Appl Biochem Biotechnol ; 189(2): 576-588, 2019 Oct.
Article in English | MEDLINE | ID: mdl-31069629

ABSTRACT

In this study, peroxidases (PODs) from three waste by-products: broad bean pods (BBP), pea pods (PP), and artichoke stems (ARS) were purified and their optimal conditions were determined for the first time. The purification process resulted in 4.32, 7.21, and 8.9% of POD recoveries for PP, ARS, and BBP, respectively. They were purified 2.12-, 32.97-, and 10-fold with specific activities of 27.26, 266.43, and 27 U/mg of protein, respectively. Analysis of their optimal conditions showed that POD purified from BBP and PP exhibited the highest activity at 60 °C temperature and pH 6 and 8 with strong affinity with catechol substrate (Km of 0.356 and 0.189 mM; Vmax of 0.08 and 0.041 µM/min for BBP and PP, respectively). The highest activity of ARS POD was obtained under the following conditions: temperature at 50 °C, pH from 6 to 8, and guaiacol as substrate (Km 0.375 mM; Vmax 0.012 µM/min). Apart from giving the opportunity for recycling the food industry wastes, the studied waste by-products could represent an alternative source of PODs that could find several applications in the biotechnological, chemical, and food industries.


Subject(s)
Cynara scolymus/enzymology , Peroxidases/isolation & purification , Pisum sativum/enzymology , Plant Proteins/isolation & purification , Waste Products , Peroxidases/chemistry , Plant Proteins/chemistry
2.
Analyst ; 143(16): 3859-3866, 2018 Aug 06.
Article in English | MEDLINE | ID: mdl-30004543

ABSTRACT

Pseudomonas aeruginosa (P. aeruginosa) possesses intracellular amidase activity, which catalyses the hydrolysis of short aliphatic amides producing NH4+, and has already been used along with an ammonium ion selective electrode for amide quantification. However, the incorporation of a biological membrane turned to be a challenging process and either the final arrangement was prone to amidase losses or the recovery of the sensor coating after the interaction took too long. In this article a flow injection system with an ammonium acoustic wave sensor is proposed, and after testing several different arrangements for the biological element, the ultimate choice consisted of the immobilization of a P. aeruginosa cell-free extract in the inner wall of a tubular glass reactor, which resulted in a reliable analytical system. Response times less than one minute and complete recovery in less than two minutes assured conveniently fast analysis. The analytical system, as long as the column was properly stored in HEPES buffer containing 2 mM ß-mercaptoethanol and 1 mM benzamidine and refrigerated when not in use, could be used at least for 20 working days, along a period of one month, maintaining the initial sensitivity.

3.
J Oleo Sci ; 65(9): 775-84, 2016.
Article in English | MEDLINE | ID: mdl-27581492

ABSTRACT

The present work involves a sensitive high-throughput microtiter plate based colorimetric assay for estimating lipase activity using cupric acetate pyridine reagent (CAPR). In the first approach, three factors two levels factorial design methodology was used to evaluate the interactive effect of different parameters on the sensitivity of the assay method. The optimization study revealed that the optimum CAPR concentration was 7.5% w/v, the optimum solvent was heptane and the optimum CAPR pH was 6. In the second approach, the optimized colorimetric microplate assay was used to measure lipase activity based on enzymatic hydrolysis of olive oil emulsion substrate at 37°C and 150 rpm. The emulsion substrates were formulated by using olive oil, triton X-100 (10% v/v in pH 8) and sodium phosphate buffer of pH 8 in ratio of 1:1:1 in the case of Candida sp. lipase. While in the case of immobilized lipozyme RMIM, The emulsion substrates were formulated by using olive oil, triton X-100 (1% v/v in pH 8) and sodium phosphate buffer of pH 8 in ratio of 2:1:1. Absorbance was measured at 655 nm. The stability of this assay (in terms of colored heptane phase absorbance readings) retained more than 92.5% after 24 h at 4°C compared to the absorbance readings measured at zero time. In comparison with other lipase assay methods, beside the developed sensitivity, the reproducibility and the lower limit of detection (LOD) of the proposed method, it permits analyzing of 96 samples at one time in a 96-well microplate. Furthermore, it consumes small quantities of chemicals and unit operations.


Subject(s)
Colorimetry/methods , Lipase/metabolism , Olive Oil/metabolism , Organometallic Compounds/chemistry , Soaps/chemistry , Candida/enzymology , Emulsions/chemistry , Emulsions/metabolism , Enzyme Activation , Olive Oil/chemistry
4.
Biotechnol Prog ; 32(1): 116-25, 2016.
Article in English | MEDLINE | ID: mdl-26580487

ABSTRACT

ß-D-glucans from mushroom strains play a major role as biological response modifiers in several clinical disorders. Therefore, a specific assay method is of critical importance to find useful and novel sources of ß-d-glucans with anti-tumor activity. Hybridoma technology was used to raise monoclonal antibodies (Mabs) against extracellular ß-d-glucans (EBG) from Pleurotus ostreatus. Two of these hybridoma clones (3F8_3H7 and 1E6_1E8_B3) secreting Mabs against EBG from P. ostreatus were selected and 3F8_3H7 was used to investigate if they are polyol-responsive Mabs (PR-Mabs) by using ELlSA-elution assay. This hybridoma cell line secreted Mab of IgM class, which was purified in a single step by gel filtration chromatography on Sephacryl S-300HR, which revealed a protein band on native PAGE with Mr of 917 kDa. Specificity studies of Mab 3F8_3H7 revealed that it recognized a common epitope on several ß-d-glucans from different basidiomycete strains as determined by indirect ELlSA and Western blotting under native conditions. This Mab exhibited high apparent affinity constant (KApp) for ß-d-glucans from several mushroom strains. However, it revealed differential reactivity to some heat-treated ß-d-glucans compared with the native forms suggesting that it binds to a conformation-sensitive epitope on ß-d-glucan molecule. Epitope analysis of Mab 3F8_3H7 and 1E6_1E8_B3 was investigated by additivity index parameter, which revealed that they bound to the same epitope on some ß-d-glucans and to different epitopes in other antigens. Therefore, these Mab can be used to assay for ß-d-glucans as well as to act as powerful probes to detect conformational changes in these biopolymers.


Subject(s)
Antibodies, Monoclonal/immunology , Neoplasms/drug therapy , Pleurotus/chemistry , beta-Glucans/immunology , Antibodies, Monoclonal/therapeutic use , Epitopes/immunology , Humans , Hybridomas/immunology , Immunoglobulin M/immunology , Polymers/chemistry , beta-Glucans/therapeutic use
5.
Biotechnol Prog ; 31(6): 1526-35, 2015.
Article in English | MEDLINE | ID: mdl-26317582

ABSTRACT

Basidiomycete strains synthesize several types of ß-d-glucans, which play a major role in the medicinal properties of mushrooms. Therefore, the specific quantification of these ß-d-glucans in mushroom strains is of great biochemical importance. Because published assay methods for these ß-d-glucans present some disadvantages, a novel colorimetric assay method for ß-d-glucan with alcian blue dye was developed. The complex formation was detected by following the decrease in absorbance in the range of 620 nm and by hypsochromic shift from 620 to 606 nm (∼14 nm) in UV-Vis spectrophotometer. Analysis of variance was used for optimization of the slope of the calibration curve by using the assay mixture containing 0.017% (w/v) alcian blue in 2% (v/v) acetic acid at pH 3.0. The high-throughput colorimetric assay method on microtiter plates was used for quantification of ß-d-glucans in the range of 0-0.8 µg, with a slope of 44.15 × 10(-2) and a limit of detection of 0.017 µg/well. Recovery experiments were carried out by using a sample of Hericium erinaceus, which exhibited a recovery of 95.8% for ß-1,3-d-glucan. The present assay method exhibited a 10-fold higher sensitivity and a 59-fold lower limit of detection compared with the published method with congo red. ß-d-glucans of several mushrooms strains were isolated from fruiting bodies and mycelia, and they were quantified by this assay method. This assay method is fast, specific, simple, and it can be used to quantify ß-d-glucans from other biological sources.


Subject(s)
Alcian Blue/analysis , Basidiomycota/chemistry , Colorimetry/methods , beta-Glucans/analysis , Linear Models , beta-Glucans/chemistry
6.
J Microbiol Methods ; 109: 140-8, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25555819

ABSTRACT

Mushroom strains contain complex nutritional biomolecules with a wide spectrum of therapeutic and prophylactic properties. Among these compounds, ß-d-glucans play an important role in immuno-modulating and anti-tumor activities. The present work involves a novel colorimetric assay method for ß-1,3-d-glucans with a triple helix tertiary structure by using Congo red. The specific interaction that occurs between Congo red and ß-1,3-d-glucan was detected by bathochromic shift from 488 to 516 nm (>20 nm) in UV-Vis spectrophotometer. A micro- and high throughput method based on a 96-well microtiter plate was devised which presents several advantages over the published methods since it requires only 1.51 µg of polysaccharides in samples, greater sensitivity, speed, assay of many samples and very cheap. ß-D-Glucans of several mushrooms (i.e., Coriolus versicolor, Ganoderma lucidum, Pleurotus ostreatus, Ganoderma carnosum, Hericium erinaceus, Lentinula edodes, Inonotus obliquus, Auricularia auricular, Polyporus umbellatus, Cordyseps sinensis, Agaricus blazei, Poria cocos) were isolated by using a sequence of several extractions with cold and boiling water, acidic and alkaline conditions and quantified by this microtiter plate method. FTIR spectroscopy was used to study the structural features of ß-1,3-D-glucans in these mushroom samples as well as the specific interaction of these polysaccharides with Congo red. The effect of NaOH on triple helix conformation of ß-1,3-D-glucans was investigated in several mushroom species.


Subject(s)
Agaricales/chemistry , Colorimetry/methods , Congo Red/metabolism , High-Throughput Screening Assays/methods , beta-Glucans/analysis , Coloring Agents/metabolism , Costs and Cost Analysis , Proteoglycans , Sensitivity and Specificity , Time Factors
7.
World J Microbiol Biotechnol ; 28(1): 245-54, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22806800

ABSTRACT

A strain of Pleurotus ostreatus was grown in tomato pomace as sole carbon source for production of laccase. The culture of P. ostreatus revealed a peak of laccase activity (147 U/L of fermentation broth) on the 4th day of culture with a specific activity of 2.8 U/mg protein. Differential chromatographic behaviour of laccase was investigated on affinity chromatographic matrices containing either urea, acetamide, ethanolamine or IDA as affinity ligands. Laccase exhibited retention on such affinity matrices and it was purified on a Sepharose 6B-BDGE-urea column with final enzyme recoveries of about 60%, specific activity of 6.0 and 18.0 U/mg protein and purification factors in the range of 14-46. It was also possible to demonstrate that metal-free laccase did not adsorb to Sepharose 6B-BDGE-urea column which suggests that adsorption of native laccase on this affinity matrix was apparently due to the specific interaction of carbonyl groups available on the matrix with the active site Cu (II) ions of laccase. The kinetic parameters (V(max), K(m), K(cat), and K(cat)/K(m)) of the purified enzyme for several substrates were determined as well as laccase stability and optimum pH and temperature of enzyme activity. This is the first report describing the production of laccase from P. ostreatus grown on tomato pomace and purification of this enzyme based on affinity matrix containing urea as affinity ligand.


Subject(s)
Laccase/biosynthesis , Pleurotus/enzymology , Pleurotus/growth & development , Agriculture , Carbon/metabolism , Chromatography, Affinity , Copper/isolation & purification , Fermentation , Hydrogen-Ion Concentration , Industrial Waste/analysis , Isoenzymes/biosynthesis , Isoenzymes/isolation & purification , Isoenzymes/metabolism , Kinetics , Laccase/isolation & purification , Laccase/metabolism , Solanum lycopersicum/chemistry , Substrate Specificity
8.
J Sci Food Agric ; 92(9): 1826-32, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22234986

ABSTRACT

BACKGROUND: Mushroom polysaccharides play an important role in functional foods because they exhibit biological modulator properties such as antitumour, antiviral and antibacterial activities. The present study involved the production, purification and characterisation of intracellular and extracellular free and protein-bound polysaccharides from Pleurotus ostreatus and the investigation of their growth-inhibitory effect on human carcinoma cell lines. RESULTS: Several fermentation parameters were obtained: batch polysaccharide productivities of 0.013 ± 8.12 × 10⁻5 and 0.037 ± 0.0005 g L⁻¹ day⁻¹ for intracellular and extracellular polysaccharides respectively, a maximum biomass concentration of 9.35 ± 0.18 g L⁻¹ , P(max) = 0.935 ± 0.018 g L⁻¹ day⁻¹, µ(max) = 0.218 ± 0.02 day⁻¹, Y(EP/X) = 0.040 ± 0.0015 g g⁻¹ and Y(IP/X) = 0.014 ± 0.0003 g g⁻¹ . Some polysaccharides exhibited superoxide dismutase (SOD)-like activity of 50-200 units. Fourier transform infrared analysis of the polysaccharides revealed absorption bands characteristic of such biological macromolecules. Cytotoxicity assays showed that both intracellular and extracellular polysaccharides exhibited antitumour activity towards several tested human carcinoma cell lines in a dose-dependent manner. CONCLUSION: The polysaccharides of P. ostreatus exhibited high SOD-like activity, which strongly supports their biological effect on tumour cell lines. The extracellular polysaccharides presented the highest antitumour activity towards the RL95 carcinoma cell line and should be further investigated as an antitumour agent.


Subject(s)
Antineoplastic Agents/therapeutic use , Biological Products/therapeutic use , Neoplasms/drug therapy , Phytotherapy , Pleurotus/chemistry , Polysaccharides/therapeutic use , Superoxide Dismutase/metabolism , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Biological Products/chemistry , Biological Products/pharmacology , Biomass , Cell Line, Tumor , Dose-Response Relationship, Drug , Fermentation , Humans , Neoplasms/metabolism , Polysaccharides/isolation & purification , Polysaccharides/pharmacology
9.
Biotechnol J ; 6(7): 888-97, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21567956

ABSTRACT

The effect of cultivation parameters such as temperature incubation, IPTG induction and ethanol shock on the production of Pseudomonas aeruginosa amidase (E.C.3.5.1.4) in a recombinant Escherichia coli strain in LB ampicillin culture medium was investigated. The highest yield of soluble amidase, relatively to other proteins, was obtained in the condition at 37°C using 0.40 mM IPTG to induce growth, with ethanol. Our results demonstrate the formation of insoluble aggregates containing amidase, which was biologically active, in all the tested growth conditions. Addition of ethanol at 25°C in the culture medium improved amidase yield, which quantitatively aggregated in a biological active form and exhibited in all conditions an increased specific activity relatively to the soluble form of the enzyme. Non-denaturing solubilization of the aggregated amidase was successfully achieved using L-arginine. The aggregates obtained from conditions at 37°C by FTIR analysis demonstrated a lower content of intermolecular interactions which facilitated the solubilization step applying non-denaturing conditions. The higher interactions exhibited in aggregates obtained at suboptimal conditions compromised the solubilization yield. This work provides an approach for the characterization and solubilization of novel reported biologically active aggregates of this amidase.


Subject(s)
Amidohydrolases/chemistry , Escherichia coli/metabolism , Pseudomonas aeruginosa/enzymology , Recombinant Proteins/chemistry , Amidohydrolases/genetics , Amidohydrolases/isolation & purification , Amidohydrolases/metabolism , Arginine/chemistry , Cell Culture Techniques , Electrophoresis, Polyacrylamide Gel , Escherichia coli/genetics , Ethanol/pharmacology , Isopropyl Thiogalactoside/pharmacology , Pseudomonas aeruginosa/genetics , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Solubility , Spectroscopy, Fourier Transform Infrared , Temperature
10.
Biomed Chromatogr ; 25(12): 1327-37, 2011 Dec.
Article in English | MEDLINE | ID: mdl-21337355

ABSTRACT

The aim of this work was to devise a one-step purification procedure for monoclonal antibodies (MAbs) of IgG class by immobilized metal affinity chromatography (IMAC). Therefore, several stationary phases were prepared containing immobilized metal chelates in order to study the chromatographic behaviour of MAbs against wild-type amidase from Pseudomonas aeruginosa. Such MAbs adsorbed to Cu(II), Ni(II), Zn(II) and Co(II)-IDA agarose columns. The increase in ligand concentration and the use of longer spacer arms and higher pH values resulted in higher adsorption of MAbs into immobilized metal chelates. The dynamic binding capacity and the maximum binding capacity were 1.33 ± 0.015 and 3.214 ± 0.021 mg IgG/mL of sedimented commercial matrix, respectively. A K(D) of 4.53 × 10(-7) m was obtained from batch isotherm measurements. The combination of tailor-made stationary phases of IMAC and the correct selection of adsorption conditions permitted a one-step purification procedure to be devised for MAbs of IgG class. Culture supernatants containing MAbs were purified by IMAC on commercial-Zn(II) and EPI-30-IDA-Zn(II) Sepharose 6B columns and by affinity chromatography on Protein A-Sepharose CL-4B. This MAb preparation revealed on SDS-PAGE two protein bands with M(r) of 50 and 22 kDa corresponding to the heavy and light chains, respectively.


Subject(s)
Amidohydrolases/immunology , Antibodies, Monoclonal/chemistry , Chromatography, Affinity/methods , Immunoglobulin G/immunology , Metals, Heavy/chemistry , Pseudomonas aeruginosa/enzymology , Amidohydrolases/chemistry , Animals , Antibodies, Monoclonal/immunology , Antibodies, Monoclonal/isolation & purification , Electrophoresis, Polyacrylamide Gel , Hybridomas , Hydrogen-Ion Concentration , Immunoglobulin G/isolation & purification , Proteomics , Sepharose , Staphylococcal Protein A/chemistry , Staphylococcal Protein A/immunology , Zinc/chemistry , Zinc/metabolism
11.
Appl Biochem Biotechnol ; 163(7): 906-17, 2011 Apr.
Article in English | MEDLINE | ID: mdl-20872184

ABSTRACT

Glucose 2-oxidase (pyranose oxidase, pyranose:oxygen-2-oxidoreductase, EC 1.1.3.10) from Coriolus versicolor catalyses the oxidation of D-glucose at carbon 2 in the presence of molecular O2 producing D-glucosone (2-keto-glucose and D-arabino-2-hexosulose) and H2O2. It was used to convert D-glucose into D-glucosone at moderate pressures (i.e. up to 150 bar) with compressed air in a modified commercial batch reactor. Several parameters affecting biocatalysis at moderate pressures were investigated as follows: pressure, [enzyme], [glucose], pH, temperature, nature of fluid and the presence of catalase. Glucose 2-oxidase was purified by immobilized metal affinity chromatography on epoxy-activated Sepharose 6B-IDA-Cu(II) column at pH 6.0. The rate of bioconversion of D-glucose increased with the pressure since an increase in the pressure with compressed air resulted in higher rates of conversion. On the other hand, the presence of catalase increased the rate of reaction which strongly suggests that H2O2 acted as inhibitor for this reaction. The rate of bioconversion of D-glucose by glucose 2-oxidase in the presence of either nitrogen or supercritical CO2 at 110 bar was very low compared with the use of compressed air at the same pressure. The optimum temperature (55 °C) and pH (5.0) of D-glucose bioconversion as well as kinetic parameters for this enzyme were determined under moderate pressure. The activation energy (E (a)) was 32.08 kJ mol⁻¹ and kinetic parameters (V(max), K(m), K(cat) and K(cat)/K(m)) for this bioconversion were 8.8 U mg⁻¹ protein, 2.95 mM, 30.81 s⁻¹ and 10,444.06 s⁻¹ M⁻¹, respectively. The biomass of C. versicolor as well as the cell-free extract containing glucose 2-oxidase activity were also useful for bioconversion of D-glucose at moderate pressures. The enzyme was apparently stable at moderate pressures since such pressures did not affect significantly the enzyme activity.


Subject(s)
Carbohydrate Dehydrogenases/metabolism , Fungal Proteins/metabolism , Glucose/metabolism , Ketoses/metabolism , Trametes/enzymology , Biocatalysis , Biomass , Bioreactors , Chromatography, Affinity , Compressed Air , Enzyme Stability , Hydrogen Peroxide/metabolism , Hydrogen-Ion Concentration , Kinetics , Oxidation-Reduction , Pressure , Substrate Specificity , Thermodynamics , Trametes/growth & development
12.
J Ind Microbiol Biotechnol ; 35(6): 475-84, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18253772

ABSTRACT

Tomato pomace and pectin were used as the sole carbon sources for the production of polygalacturonase from a strain of Coriolus versicolor in submerged culture. The culture of C. versicolor grown on tomato pomace exhibited a peak of polygalacturonase activity (1,427 U/l) on the third day of culture with a specific activity of 14.5 U/mg protein. The production of polygalacturonase by C. versicolor grown on pectin as a sole carbon source increased with the time of cultivation, reaching a maximum activity of 3,207 U/l of fermentation broth with a specific activity of 248 U/mg protein. The levels of different isoenzymes of polygalacturonase produced during the culture growth were analysed by native PAGE. Differential chromatographic behaviour of lignocellulosic enzymes produced by C. versicolor (i.e. polygalacturonase, xylanase and laccase) was studied on immobilized metal chelates. The effect of ligand concentration, pH, the length of spacer arm and the nature of metal ion were studied for enzyme adsorption on immobilized metal affinity chromatography (IMAC). The adsorption of these lignocellulosic enzymes onto immobilized metal chelates was pH-dependent since an increase in protein adsorption was observed as the pH was increased from 6.0 to 8.0. The adsorption of polygalacturonase as well as other enzymes to immobilized metal chelates was due to coordination of histidine residues which are available at the protein surface since the presence of imidazole in the equilibration buffer abolished the adsorption of the enzyme to immobilized metal chelates. A one-step purification of polygalacturonase from C. versicolor was devised by using a column of Sepharose 6B-EPI 30-IDA-Cu(II) and purified enzyme exhibited a specific activity of about 150 U/mg protein, final recovery of enzyme activity of 100% and a purification factor of about 10. The use of short spacer arm and the presence of imidazole in equilibration buffer exhibited a higher selectivity for purification of polygalacturonase on this column with a high purification factor. The purified enzyme preparation was analysed by SDS-PAGE as well as by "in situ" detection of enzyme activity.


Subject(s)
Chelating Agents/chemistry , Metals/chemistry , Polygalacturonase/biosynthesis , Polyporaceae/enzymology , Solanum lycopersicum/metabolism , Carbohydrates/analysis , Chromatography, Agarose , Culture Media/chemistry , Fermentation , Polygalacturonase/chemistry , Proteins/analysis
13.
Mol Biotechnol ; 37(2): 136-45, 2007 Oct.
Article in English | MEDLINE | ID: mdl-17914174

ABSTRACT

Hybridoma technology was used to raise monoclonal antibodies (MAbs) against wild-type amidase from Pseudomonas aeruginosa. Hybridoma clones secreting polyol-responsive MAbs (PR-MAbs) were screened that bind antigen tightly. but release under mild- and non-denaturing elution conditions, which can be used as ligands in immunoaffinity chromatography. Two of these hybridoma clones (C9E4 and B1E4) secreting MAbs against wild-type amidase were selected in order to check if they are PR-MAbs by using ELISA-elution assay. These hybridoma cell lines secreted MAbs of IgG class which were purified in a single step by Protein A-Sepharose CL-4B chromatography, which revealed two protein bands on SDS-PAGE. Specificity studies of MAb C9E4 revealed that it recognized a common epitope on wild-type and mutant T103I amidases as determined by direct ELISA, as well as by Western blotting under native conditions. This MAb exhibited a higher-affinity constant (K) for the mutant T103I amidase than for the wild-type enzyme. However, this MAb did not recognize either wild-type or mutant T103I enzymes under denaturing conditions suggesting that it binds to a conformation-sensitive epitope on amidase molecule. On the other hand, it also does not recognize either native or denatured forms of mutant C91A amidase suggesting that this substitution disrupted the conformational epitope present on amidase molecule. Furthermore, MAb C9E4 inhibited about 80% of wild-type amidase activity, whereas it activated about 80% of mutant amidase (T103I) activity. However, this MAb did not affect mutant C91A amidase activity which is in agreement with other results presented in this work. The data presented in this work suggest that this MAb acts as a powerful probe to detect conformational changes in native and denatured amidases as well as to differentiate wild-type and mutant (T103I and C91A) amidases.


Subject(s)
Amidohydrolases/immunology , Amidohydrolases/metabolism , Antibodies, Monoclonal/immunology , Epitopes/immunology , Pseudomonas aeruginosa/enzymology , Amidohydrolases/genetics , Antibodies, Monoclonal/isolation & purification , Cell-Free System , Chromatography, Affinity , Enzyme-Linked Immunosorbent Assay , Mutation/genetics , Pseudomonas aeruginosa/genetics , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/metabolism
14.
J Biol Chem ; 282(27): 19598-605, 2007 Jul 06.
Article in English | MEDLINE | ID: mdl-17442671

ABSTRACT

Microbial amidases belong to the thiol nitrilases family and have potential biotechnological applications in chemical and pharmaceutical industries as well as in bioremediation. The amidase from Pseudomonas aeruginosa isa6 x 38-kDa enzyme that catalyzes the hydrolysis of a small range of short aliphatic amides. The hereby reported high resolution crystallographic structure shows that each amidase monomer is formed by a globular four-layer alphabetabetaalpha sandwich domain with an additional 81-residue long C-terminal segment. This wraps arm-in-arm with a homologous C-terminal chain of another monomer, producing a strongly packed dimer. In the crystal, the biological active homo-hexameric amidase is built grouping three such dimers around a crystallographic 3-fold axis. The structure also elucidates the structural basis for the enzyme activity, with the nitrilases catalytic triad at the bottom of a 13-A deep, funnel-shaped pocket, accessible from the solvent through a narrow neck with 3-A diameter. An acyl transfer intermediate, resulting from the purification protocol, was found bound to the amidase nucleophilic agent, Cys(166). These results suggest that some pocket defining residues should undergo conformational shifts to allow substrates and products to access and leave the catalytic pocket, for turnover to occur.


Subject(s)
Amidohydrolases/chemistry , Bacterial Proteins/chemistry , Pseudomonas aeruginosa/enzymology , Binding Sites , Crystallography, X-Ray , Dimerization , Protein Structure, Quaternary , Protein Structure, Secondary
15.
Article in English | MEDLINE | ID: mdl-17329817

ABSTRACT

The aliphatic amidase (acylamide amidohydrolase; EC 3.5.1.4) from Pseudomonas aeruginosa is a hexameric enzyme composed of six identical subunits with a molecular weight of approximately 38 kDa. Since microbial amidases are very important enzymes in industrial biocatalysis, the structural characterization of this enzyme will help in the design of novel catalytic activities of commercial interest. The present study reports the successful crystallization of the wild-type amidase from P. aeruginosa. Native crystals were obtained and a complete data set was collected at 1.4 A resolution, although the crystals showed diffraction to 1.25 A resolution. The crystals were found to belong to space group P6(3)22, with unit-cell parameters a = b = 102.60, c = 151.71 A, and contain one molecule in the asymmetric unit.


Subject(s)
Amidohydrolases/chemistry , Bacterial Proteins/chemistry , Crystallography, X-Ray/methods , Pseudomonas aeruginosa/enzymology , X-Ray Diffraction/methods , Amidohydrolases/analysis , Bacillaceae/enzymology , Bacterial Proteins/analysis , Crystallization , Drug Design , Industrial Microbiology/methods , Structural Homology, Protein
16.
Mol Biotechnol ; 33(2): 103-14, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16757797

ABSTRACT

The chromatographic behavior of monoclonal antibodies (MAbs) of immunoglobulin (Ig) M class against mutant (T103I) amidase from Pseudomonas aeruginosa was investigated on immobilized metal chelates. The effect of ligand concentration, the length of spacer arm, and the nature of metal ion were investigated in immobilized metal affinity chromatography (IMAC). The MAbs against mutant amidase adsorbed to Cu(II), Ni(II), Zn(II), Co(II), and Ca(II)-iminodiacetic acid (IDA) agarose columns. The increase in ligand concentration (epichlorohydrin: 30-60 and 1,4-butanediol-diglycidyl ether: 16-36) resulted in higher adsorption to IgM into immobilized metal chelates. The length of spacer arm was found to affect protein adsorption, as longer spacer arm (i.e., 1,4-butanediol-diglycidyl ether) increased protein adsorption of immobilized metal chelates. The adsorption of IgM onto immobilized metal chelates was pH dependent because an increase in the binding of IgM was observed as the pH varied from 6.0 to 8.0. The adsorption of IgM to immobilized metal chelates was the result of coordination of histidine residues to metal chelates that are available in the third constant domain of heavy chain (CH3) of immunoglobulins, as the presence of imidazole (5 mM) in the equilibration buffer abolished the adsorption of IgM to the column. The combination of tailor-made stationary phases for IMAC and a correct design of the adsorption parameters permitted to devise a one-step purification procedure for IgM. Culture supernatants containing IgM against mutant amidase (T103I) were purified either by IMAC on EPI-60-IDA-Co (II) column or by gel filtration chromatography on Sephacryl S-300HR. The specific content of IgM and final recovery of antibody activity exhibited similar values for both purification schemes. The purified preparations of IgM obtained by both schemes were apparently homogeneous on native polyacrylamide gel electrophoresis with a M(r) of 851,000 Da. The results presented in this work strongly suggest that one-step purification of IgM by IMAC is a cost-effective and processcompatible alternative to other types of chromatography.


Subject(s)
Amidohydrolases/immunology , Antibodies, Monoclonal/isolation & purification , Chromatography, Affinity/methods , Immunoglobulin M/isolation & purification , Metals/metabolism , Mutant Proteins/immunology , Pseudomonas aeruginosa/enzymology , Antibodies, Monoclonal/immunology , Chelating Agents/pharmacology , Chromatography, Gel , Electrophoresis, Polyacrylamide Gel , Hydrogen-Ion Concentration/drug effects , Imidazoles/pharmacology , Immunoglobulin M/immunology , Pseudomonas aeruginosa/drug effects
17.
J Mol Recognit ; 19(4): 340-7, 2006.
Article in English | MEDLINE | ID: mdl-16739239

ABSTRACT

The chromatographic behaviour of monoclonal antibodies (MAbs) of IgM class against mutant (T103I) amidase from Pseudomonas aeruginosa was investigated. The effect of ligand concentration, the length of spacer arm and the nature of metal ion were investigated on immobilized metal ion affinity chromatography (IMAC). MAbs against mutant amidase adsorbed to Cu (II), Ni (II), Zn (II), Co (II) and Ca (II)-IDA agarose columns. The adsorption of MAbs onto immobilized metal chelates was pH dependent because an increase in the binding of MAbs was observed as the pH was raised from 6.0 to 8.0. The adsorption of MAbs to metal chelates was due to coordination of histidine residues which are available in the 3rd constant domain of heavy chain (CH3) of immunoglobulins since the presence of imidazole in the equilibration buffer abolished the adsorption of MAbs to the column packed with commercial IDA-Zn(II) agarose at pH 8.0. The combination of tailor-made stationary phases for IMAC and a correct choice of the adsorption conditions permitted to design a one-step purification procedure for MAbs of IgM class. Culture supernatants containing MAbs of IgM class against mutant amidase (T103I) were chromatographed by IMAC Co (II) column at pH 8.0. The results strongly suggest that one-step purification of MAbs of IgM class by IMAC is a cost-effective and process-compatible alternative to the other purification procedures.


Subject(s)
Amidohydrolases/genetics , Antibodies, Monoclonal/immunology , Antibodies, Monoclonal/pharmacokinetics , Chelating Agents/chemistry , Metals/chemistry , Mutation/genetics , Pseudomonas aeruginosa/enzymology , Adsorption , Antibodies, Monoclonal/isolation & purification , Chromatography, Gel , Electrophoresis, Polyacrylamide Gel , Hydrogen-Ion Concentration , Imidazoles/chemistry , Immunoglobulin M/immunology
18.
Mol Biotechnol ; 30(3): 207-19, 2005 Jul.
Article in English | MEDLINE | ID: mdl-15988046

ABSTRACT

Monoclonal antibodies (MAbs) against mutant (T103I) amidase from Pseudomonas aeruginosa were raised by hybridoma technology. To select MAbs suitable for immunoaffinity chromatography, hybridoma clones secreting polyol-responsive MAbs (PR-MAbs) were screened that bind antigen tightly but release under mild and nondenaturing elution conditions. It was found that about 10% of enzyme-linked immunosorbent assay (ELISA)-positive hybridoma produce these MAbs as their ag-ab complex can be disrupted by propylene glycol in the presence of a suitable salt. Two of these hybridoma clones (F6G7 and E2A6) secreting PR-MAbs against mutant amidase were selected for optimization of experimental conditions for elution of amidase by using ELISA elution assay. These hybridoma cell lines secreted MAbs of IgM class that were purified in a single step by gel filtration chromatography, which revealed a single protein band on native polyacrylamide gel electrophoresis (PAGE). Specificity studies of this MAb revealed that it recognized specifically a common epitope on mutant and wild-type amidases as determined by direct ELISA. This MAb exhibited a higher affinity for denatured forms of wild-type and mutant amidases than for native forms as revealed by affinity constants (K), suggesting that it recognizes a cryptic epitope on an amidase molecule. Furthermore, MAb E2A6 inhibited about 60% of wild-type amidase activity, whereas it activated about 60% of mutant amidase (T103I) activity. The data presented in this work suggest that this MAb acts as a very useful probe to detect conformational changes in native and denatured amidases as well as to differentiate wild-type and mutant (T103I) amidases.


Subject(s)
Amidohydrolases/chemistry , Amidohydrolases/immunology , Antibodies, Monoclonal/immunology , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/immunology , Threonine/metabolism , Amidohydrolases/genetics , Animals , Antibodies, Monoclonal/isolation & purification , Chromatography, Gel , Enzyme-Linked Immunosorbent Assay , Female , Mice , Mice, Inbred BALB C , Mutation/genetics , Protein Denaturation , Protein Folding , Pseudomonas aeruginosa/genetics , Sodium Chloride/pharmacology , Temperature , Threonine/genetics
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