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1.
Chemphyschem ; : e202400244, 2024 May 07.
Article in English | MEDLINE | ID: mdl-38712639

ABSTRACT

Ion-specific effects on aqueous solvation of monovalent counter ions, Na+, K+, Cl-, and Br-, and two model polyeletrolytes (PEs), poly(styrene sulfonate) (PSS) and poly(diallyldimethylammonium) (PDADMA) were here studied with ab initio molecular dynamics (AIMD) and classical molecular dynamics (MD) simulations based on the OPLS-aa force-field which is an empirical fixed point-charge force-field. Ion-specific binding to the PE charge groups was also characterized. Both computational methods predict similar response for the solvation of the PEs but differ notably in description of ion solvation. Notably, AIMD captures the experimentally observed differences in Cl- and Br- anion solvation and binding with the PEs, while the classical MD simulations fail to differentiate the ion species response. Furthermore, the findings show that combining AIMD with the computationally less costly classical MD simulations allows benefiting from both the increased accuracy and statistics reach.

2.
Phys Chem Chem Phys ; 25(27): 18182-18196, 2023 Jul 12.
Article in English | MEDLINE | ID: mdl-37387688

ABSTRACT

We show by extensive experimental characterization combined with molecular simulations that pH has a major impact on the assembly mechanism and properties of poly(L-lysine) (PLL) and poly(L-glutamic acid) (PGA) complexes. A combination of dynamic light scattering (DLS) and laser Doppler velocimetry (LDV) is used to assess the complexation, charge state, and other physical characteristics of the complexes, isothermal titration calorimetry (ITC) is used to examine the complexation thermodynamics, and circular dichroism (CD) is used to extract the polypeptides' secondary structure. For enhanced analysis and interpretation of the data, analytical ultracentrifugation (AUC) is used to define the precise molecular weights and solution association of the peptides. Molecular dynamics simulations reveal the associated intra- and intermolecular binding changes in terms of intrinsic vs. extrinsic charge compensation, the role of hydrogen bonding, and secondary structure changes, aiding in the interpretation of the experimental data. We combine the data to reveal the pH dependency of PLL/PGA complexation and the associated molecular level mechanisms. This work shows that not only pH provides a means to control complex formation but also that the associated changes in the secondary structure and binding conformation can be systematically used to control materials assembly. This gives access to rational design of peptide materials via pH control.


Subject(s)
Glutamic Acid , Polylysine , Polylysine/chemistry , Peptides/chemistry , Protein Structure, Secondary , Hydrogen-Ion Concentration , Circular Dichroism
3.
ACS Polym Au ; 2(4): 287-298, 2022 Aug 10.
Article in English | MEDLINE | ID: mdl-35971421

ABSTRACT

Water existing within thin polyelectrolyte multilayer (PEM) films has significant influence on their physical, chemical, and thermal properties, having implications for applications including energy storage, smart coatings, and biomedical systems. Ionic strength, salt type, and terminating layer are known to influence PEM swelling. However, knowledge of water's microenvironment within a PEM, whether that water is affiliated with intrinsic or extrinsic ion pairs, remains lacking. Here, we examine the influence of both assembly and post-assembly conditions on the water-ion pair interactions of poly(styrene sulfonate)/poly(diallyldimethylammonium) (PSS/PDADMA) PEMs in NaCl and KBr. This is accomplished by developing a methodology in which quartz crystal microbalance with dissipation monitoring is applied to estimate the number of water molecules affiliated with an ion pair (i), as well as the hydration coefficient, πsalt H2O. PSS/PDADMA PEMs are assembled in varying ionic strengths of either NaCl and KBr and then exposed post-assembly to increasing ionic strengths of matching salt type. A linear relationship between the total amount of water per intrinsic ion pair and the post-assembly salt concentration was obtained at post-assembly salt concentrations >0.5 M, yielding estimates for both i and πsalt H2O. We observe higher values of i and πsalt H2O in KBr-assembled PEMs due to KBr being more effective in doping the assembly because of KBr's more chaotropic nature as compared to NaCl. Lastly, when PSS is the terminating layer, i decreases in value due to PSS's hydrophobic nature. Classical and ab initio molecular dynamics provide a microstructural view as to how NaCl and KBr interact with individual polyelectrolytes and the involved water shells. Put together, this study provides further insight into the understanding of existing water microenvironments in PEMs and the effects of both assembly and post-assembly conditions.

4.
Phys Chem Chem Phys ; 21(46): 25606-25625, 2019 Nov 27.
Article in English | MEDLINE | ID: mdl-31720607

ABSTRACT

Electronic coupling between adjacent molecules is one of the key parameters determining the charge transfer (CT) rates in bulk heterojunction (BHJ) polymer solar cells (PSCs). We calculate theoretically electronic couplings for exciton dissociation (ED) and charge recombination (CR) processes at local poly(thiophene-co-quinoxaline) (TQ)-PC71BM interfaces. We use eigenstate-based coupling schemes, i.e. the generalized Mulliken-Hush (GMH) and fragment charge difference (FCD) schemes, including 2 to multiple (3-11) states. Moreover, we study the effects of functionals, excited state methods, basis sets, surrounding media, and relative placements of TQ and PC71BM on the coupling values. Generally, both schemes provide consistent couplings with the global hybrid functionals, which yield more charge-localized diabatic states and constant coupling values regardless of the number of states, and so the 2-state schemes may be sufficient. The (non-tuned and optimally tuned) long-range corrected (LRC) functionals result in more notable mixing of the local components with the CT states. Employing multiple states reduces the mixing and thus improves the LRC results, although the method still affects the GMH CR couplings. As the FCD scheme is less sensitive, we recommend combining it with the multi-state treatment for polymer-fullerene systems when using the LRC functionals. Finally, we employ the 11-state FCD couplings to calculate the ED and CR rates, which are consistent with the experimental rates of the polymer-fullerene systems. Our results provide more insight into choosing a suitable eigenstate-based coupling scheme for predicting the electronic couplings and CT rates in photoactive systems.

5.
J Phys Chem A ; 120(7): 1051-64, 2016 Feb 25.
Article in English | MEDLINE | ID: mdl-26840559

ABSTRACT

Conjugated donor-acceptor (D-A) copolymers show tremendous promise as active components in thin-film organic bulk heterojunction solar cells and transistors, as appropriate combinations of D-A units enable regulation of the intrinsic electronic and optical properties of the polymer. Here, the structural, electronic, and optical properties of two D-A copolymers that make use of thieno[3,4-c]pyrrole-4,6-dione as the acceptor and differ by their donor unit-benzo[1,2-b:4,5-b']dithiophene (BDT) vs the ladder-type heptacyclic benzodi(cyclopentadithiophene)-are compared using density functional theory methods. Our calculations predict some general similarities, although the differences in the donor structures lead also to clear differences. The extended conjugation of the stiff ladder-type donor destabilizes both the highest occupied and lowest unoccupied molecular orbital energies of the ladder copolymer and results in smaller gap energies compared to its smaller counterpart. However, more significant charge transfer nature is predicted for the smaller BDT-based copolymer by natural transition orbitals than for the ladder copolymer. That is, the influence of the acceptor on the copolymer properties is "diluted" to some extent by the already extended conjugation of the ladder-type donor. Thus, the use of stronger acceptor units with the ladder-type donors would benefit the future design of new D-A copolymers.

6.
J Org Chem ; 81(4): 1535-46, 2016 Feb 19.
Article in English | MEDLINE | ID: mdl-26771655

ABSTRACT

The benzothiadiazole moiety has been extensively exploited as a building block in the syntheses of efficient organic semiconducting materials during the past decade. In this paper, parallel synthetic routes to benzothiadiazole derivatives, inspired by previous computational findings, are reported. The results presented here show that various C-C cross-couplings of benzothiadiazole, thiophene, and thiazole derivatives can be efficiently performed by applying Xantphos as a ligand of the catalyst system. Moreover, improved and convenient methods to synthesize important chemical building blocks, e.g., 4,7-dibromo-2,1,3-benzothiadiazole, in good to quantitative yields are presented. Additionally, the feasibility of Suzuki-Miyaura and direct coupling methods are compared in the synthesis of target benzothiadiazole derivatives. The computational characterization of the prepared benzothiadiazole derivatives shows that these compounds have planar molecular backbones and the possibility of intramolecular charge transfer upon excitation. The experimental electrochemical and spectroscopic studies reveal that although the compounds have similar electronic and optical properties in solution, they behave differently in solid state due to the different alkyl side-group substitutions in the molecular backbone. These benzothiadiazole derivatives can be potentially used as building blocks in the construction of more advanced small molecule organic semiconductors with acceptor-donor-acceptor motifs.

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