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1.
Eur Biophys J ; 51(1): 85-94, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34839370

ABSTRACT

In this work we report on observations of new twisted (cholesteric-like) structures in liquid-crystalline dispersion particles with a hexagonal packing of double-stranded (ds) DNA molecules. Heating up to 80 °C of the DNA dispersion formed in a aqueous-salt solution with a high osmotic pressure (concentration) of poly(ethylene glycol) induces the formation of a new, optically active, spirally twisted structure of these molecules ("re-entrant" cholesteric structure (rest-A structure)). Cooling of this dispersion up to 22 °C is accompanied by the formation of an additional "re-entrant" cholesteric structure (rest-B). Modification of particles of the ds DNA dispersion (with rest-B structure) by replacing Na+ cations by multi-charged Gd3+ cations results in the third " re-entrant" structure (rest-C) despite a high density packing of ds nucleic acid molecules.


Subject(s)
DNA , Liquid Crystals , Nucleic Acid Conformation , Polyethylene Glycols , Water
2.
Soft Matter ; 14(35): 7174-7179, 2018 Sep 11.
Article in English | MEDLINE | ID: mdl-30137094

ABSTRACT

In this paper we report on observations of unusual linear defects forming spontaneously in polar free-standing smectic-C* films near the temperatures of thinning transitions. At high temperature a periodic structure of defects becomes the ground state of the system. We found that the defects are characterized by continuous rotation of the molecular orientation with a change of the sense of the rotation across the defects. We develop a simple theoretical model that describes the observed behavior. The structure of the defects is governed by the competition between two-dimensional quadratic and linear orientational elasticity. The proposed model explains the origin of the linear defects, the periodic structure and their transformation with temperature and chirality of the liquid crystal.

3.
J Phys Chem B ; 121(28): 6860-6868, 2017 07 20.
Article in English | MEDLINE | ID: mdl-28650664

ABSTRACT

The present study is the application of a two-state model formerly developed by Bicout and Zaccai [ Bicout , D. J. and Zaccai , G. Biophys. J. 2001 , 80 ( 3 ), 1115 - 1123 ] to describe the dynamical transition exhibited in the atomic mean square displacements of biological samples in terms of dynamic and thermodynamic parameters. Data were obtained by elastic incoherent neutron scattering on 1,2-dimyristoyl-sn-glycero-3-phosphocholine lipid membranes in various hydration states and on one partially per-deuterated lipid membrane. Fitting the data with the model allowed investigating which parts of lipid molecules were mainly involved in the dynamical transition, heads, tails, or both. Clear differences were found between the fully protonated and partially deuterated membranes. These findings shed light on the question of what is the degree of dynamical cooperativity of the atoms during the transition. Whereas the level of hydration does not significantly affect it, as the dry, the intermediate dry, and fully hydrated membranes all undergo a rather broad transition, the transition of the lipid tails is much sharper and sets in at much lower temperature than that of the heads. Therefore, the dynamical cooperativity appears high among the particles in the tails. Moreover, the transition of the lipid tails has to be completed first before the one of the head groups starts.

4.
J Biol Phys ; 43(1): 45-68, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28028733

ABSTRACT

In this research, we observe and rationalize theoretically the transition from hexagonal to cholesteric packing of double-stranded (ds) DNA in dispersion particles. The samples were obtained by phase exclusion of linear ds DNA molecules from water-salt solutions of poly(ethylene glycol)-PEG-with concentrations ranging from 120 mg ml-1 to 300 mg ml-1. In the range of PEG concentrations from 120 mg ml-1 to 220 mg ml-1 at room temperature, we find ds DNA molecule packing, typical of classical cholesterics. The corresponding parameters for dispersion particles obtained at concentrations greater than 220 mg ml-1 indicate hexagonal packing of the ds DNA molecules. However, slightly counter-intuitively, the cholesteric-like packing reappears upon the heating of dispersions with hexagonal packing of ds DNA molecules. This transition occurs when the PEG concentration is larger than 220 mg ml-1. The obtained new cholesteric structure differs from the classical cholesterics observed in the PEG concentration range 120-220 mg ml-1 (hence, the term 're-entrant'). Our conclusions are based on the measurements of circular dichroism spectra, X-ray scattering curves and textures of liquid-crystalline phases. We propose a qualitative (similar to the Lindemann criterion for melting of conventional crystals) explanation of this phenomenon in terms of partial melting of so-called quasinematic layers formed by the DNA molecules. The quasinematic layers change their spatial orientation as a result of the competition between the osmotic pressure of the solvent (favoring dense, unidirectional alignment of ds DNA molecules) and twist Frank orientation energy of adjacent layers (favoring cholesteric-like molecular packing).


Subject(s)
DNA/chemistry , Liquid Crystals/chemistry , Models, Molecular , Nucleic Acid Conformation , Optical Phenomena , Polyethylene Glycols/chemistry , Temperature
5.
Phys Rev Lett ; 110(1): 010602, 2013 Jan 04.
Article in English | MEDLINE | ID: mdl-23383771

ABSTRACT

A bounded random walk exhibits strong correlations between collisions with a boundary. For a one-dimensional walk, we obtain the full statistical distribution of the number of such collisions in a time t. In the large t limit, the fluctuations in the number of collisions are found to be size independent (independent of the distance between boundaries). This occurs for any interboundary distance, from less to greater than the mean free path, and means that this boundary effect does not decay with increasing system size. As an application, we consider spin-polarized gases, such as 3-helium, in the three-dimensional diffusive regime. The above results mean that the depolarizing effect of rare magnetic impurities in the container walls is orders of magnitude larger than a Smoluchowski assumption (to neglect correlations) would imply. This could explain why depolarization is so sensitive to the container's treatment with magnetic fields prior to its use.

6.
Langmuir ; 27(6): 2880-7, 2011 Mar 15.
Article in English | MEDLINE | ID: mdl-21323316

ABSTRACT

New stable states of liquid crystal 8CB could be induced by nonlinear shear conditions and observed by a newly developed rheology/X-ray scattering setup using synchrotron X-ray radiation. Nonlinear oscillatory shear created a distorted sixth order orientational structure. Even when oscillatory shear is switched off, the induced structure remains stable and can be removed only by heating the system into the isotropic state. We assume the structure to be stabilized by defects that pin the new 6-fold phase.

7.
Phys Rev Lett ; 91(22): 228101, 2003 Nov 28.
Article in English | MEDLINE | ID: mdl-14683275

ABSTRACT

We address the relation between long-range correlations and charge transfer efficiency in aperiodic artificial or genomic DNA sequences. Coherent charge transfer through the highest occupied molecular orbital states of the guanine nucleotide is studied using the transmission approach, and the focus is on how the sequence-dependent backscattering profile can be inferred from correlations between base pairs.


Subject(s)
DNA/chemistry , Guanine Nucleotides/chemistry , Chromosomes, Human, Pair 22 , DNA/genetics , Humans
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