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1.
Protein Sci ; 4(10): 1998-2005, 1995 Oct.
Article in English | MEDLINE | ID: mdl-8535236

ABSTRACT

We report here the first three-dimensional structure of a mammalian thioltransferase as determined by single crystal X-ray crystallography at 2.2 A resolution. The protein is known for its thiol-redox properties and dehydroascorbate reductase activity. Recombinant pig liver thioltransferase expressed in Escherichia coli was crystallized in its oxidized form by vapor diffusion technique. The structure was determined by multiple isomorphous replacement method using four heavy-atom derivatives. The protein folds into an alpha/beta structure with a four-stranded mixed beta-sheet in the core, flanked on either side by helices. The fold is similar to that found in other thiol-redox proteins, viz. E. coli thioredoxin and bacteriophage T4 glutaredoxin, and thus seems to be conserved in these functionally related proteins. The active site disulfide (Cys 22-Cys 25) is located on a protrusion on the molecular surface. Cys 22, which is known to have an abnormally low pKa of 3.8, is accessible from the exterior of the molecule. Pro 70, which is in close proximity to the disulfide bridge, assumes a conserved cis-peptide configuration. Mutational data available on the protein are in agreement with the three-dimensional structure.


Subject(s)
Oxidoreductases/chemistry , Protein Disulfide Reductase (Glutathione) , Protein Folding , Protein Structure, Secondary , Animals , Cloning, Molecular , Crystallography, X-Ray/methods , Escherichia coli , Glutaredoxins , Liver/enzymology , Models, Molecular , Recombinant Proteins/chemistry , Swine , Thermodynamics
2.
J Mol Biol ; 225(4): 1127-30, 1992 Jun 20.
Article in English | MEDLINE | ID: mdl-1351949

ABSTRACT

Crystals of the two amino-terminal domains of intercellular adhesion molecule-1, the receptor for the major group of human rhinovirus serotypes, diffract to 3.0 A resolution. The crystals are trigonal in space group P3(1)21 or P3(2)21 with cell dimensions of a = b = 55.7 A, c = 166.3 A, with probably six molecules per unit cell.


Subject(s)
Cell Adhesion Molecules/chemistry , Receptors, Virus/chemistry , Rhinovirus/physiology , Antigens, CD/chemistry , Cell Adhesion Molecules/physiology , Cell Adhesion Molecules/ultrastructure , Humans , Intercellular Adhesion Molecule-1 , Microscopy, Electron/methods , Protein Conformation , Receptors, Virus/physiology , Receptors, Virus/ultrastructure , Rhinovirus/ultrastructure , X-Ray Diffraction/methods
3.
J Mol Biol ; 212(1): 167-84, 1990 Mar 05.
Article in English | MEDLINE | ID: mdl-2181145

ABSTRACT

The crystal structure of thioredoxin from Escherichia coli has been refined by the stereochemically restrained least-squares procedure to a crystallographic R-factor of 0.165 at 1.68 A resolution. In the final model, the root-mean-square deviation from ideality for bond distances is 0.015 A and for angle distances 0.035 A. The structure contains 1644 protein atoms from two independent molecules, two Cu2+, 140 water molecules and seven methylpentanediol molecules. Ten residues have been modeled in two alternative conformations. E. coli thioredoxin is a compact molecule with 90% of its residues in helices, beta-strands or reverse turns. The molecule consists of two conformational domains, beta alpha beta alpha beta and beta beta alpha, connected by a single-turn alpha-helix and a 3(10) helix. The beta-sheet forms the core of the molecule packed on either side by clusters of hydrophobic residues. Helices form the external surface. The active site disulfide bridge between Cys32 and Cys35 is located at the amino terminus of the second alpha-helix. The positive electrostatic field due to the helical dipole is probably important for stabilizing the anionic intermediate during the disulfide reductase function of the protein. The more reactive cysteine, Cys32, has its sulfur atom exposed to solvent and also involved in a hydrogen bond with a backbone amide group. Residues 29 to 37, which include the active site cysteine residues, form a protrusion on the surface of the protein and make relatively fewer interactions with the rest of the structure. The disulfide bridge exhibits a right-handed conformation with a torsion angle of 81 degrees and 72 degrees about the S-S bond in the two molecules. Twenty-five pairs of water molecules obey the noncrystallographic symmetry. Most of them are involved in establishing intramolecular hydrogen-bonding interactions between protein atoms and thus serve as integral parts of the folded protein structure. Methylpentanediol molecules often pack against the loops and stabilize their structure. Cu2+ used for crystallization exhibit a distorted octahedral square bipyramid co-ordination and provide essential packing interactions in the crystal. The two independent protein molecules are very similar in conformation but distinctly different in atomic detail (root-mean-square = 0.94 A). The differences, which may be related to the crystal contacts, are localized mostly to regions far from the active site.


Subject(s)
Bacterial Proteins , Escherichia coli , Thioredoxins , Amino Acids , Binding Sites , Computer Graphics , Copper , Glycols , Hydrogen Bonding , Models, Molecular , Protein Conformation , Water , X-Ray Diffraction
4.
J Mol Biol ; 205(3): 557-71, 1989 Feb 05.
Article in English | MEDLINE | ID: mdl-2926818

ABSTRACT

The crystal structure of muconolactone isomerase from Pseudomonas putida, a unique molecule with ten 96 amino acid subunits and 5-fold, and 2-fold symmetries, has been solved at 3.3 A resolution. The non-crystallographic symmetries were used to refine the initial single isomorphous replacement phases and produce an interpretable 10-fold averaged map. The backbone trace is complete and confirmed by the amino acid sequence fit. Each subunit is composed of a body with two alpha-helices and an antiparallel twisted beta-sheet of four strands, and an extended arm. The helices and the sheet fold to form a two-layered structure with an enclosed hydrophobic core and a partially formed putative active site pocket. The C-terminal arm of another subunit related by a local dyad symmetry extends over the core to complete this pocket. The decameric protein is almost spherical, with the helices forming the external coat. There is a large hydrophilic cavity in the center with open ends along the 5-fold axis. Molecular interactions between subunits are extensive. Each subunit contacts four neighbors and loses nearly 40% of its solvent contact area on oligomerization.


Subject(s)
Bacterial Proteins , Carbon-Carbon Double Bond Isomerases , Isomerases , Pseudomonas/enzymology , Amino Acids , Catalysis , Models, Molecular , Models, Structural , Polymers , X-Ray Diffraction
5.
Am Heart J ; 113(4): 958-65, 1987 Apr.
Article in English | MEDLINE | ID: mdl-3565245

ABSTRACT

To determine whether survival following permanent ventricular demand pacing differs from survival following permanent dual-chamber pacing in patients with symptomatic sinus node dysfunction (unexplained sinus bradycardia, subsidiary rhythms, sinus arrest, sinoatrial block, or the bradycardia/tachycardia syndrome), we followed 79 patients who received a VVI pacemaker (group 1) and 49 patients who received a DVI or DDD pacemaker (group 2) for 1 to 5 years. There was no significant difference in sex distribution, mean age, or the incidence of coronary heart disease, hypertension, valvular heart disease, diabetes mellitus, stroke, or renal failure between groups 1 and 2. Overall, the predicted cumulative survival rates at 1, 3, and 5 years were 89%, 82%, and 74%, respectively, for group 1 and 94%, 86%, and 78%, respectively, for group 2. In patients with preexistent congestive heart failure (CHF), predicted cumulative survival rates at 1, 3, and 5 years were 78%, 69%, and 57%, respectively, for group 1 (n = 23) and 90%, 83%, and 75%, respectively, for group 2 (n = 16). Five-year predicted cumulative survival was significantly lower in group 1 patients with CHF than in group 2 patients with CHF (p less than 0.03). There was no significant difference in 5-year cumulative survival rates between groups 1 and 2 in patients without CHF. The results suggest that permanent dual-chamber pacing enhances survival to a greater extent than permanent ventricular demand pacing in patients with chronic symptomatic sinus node dysfunction and CHF.


Subject(s)
Arrhythmias, Cardiac/mortality , Cardiac Pacing, Artificial/methods , Heart Atria , Heart Failure/mortality , Heart Ventricles , Sinoatrial Node , Aged , Arrhythmias, Cardiac/complications , Arrhythmias, Cardiac/therapy , Atrial Function , Bradycardia/mortality , Bradycardia/therapy , Chronic Disease , Death/etiology , Female , Follow-Up Studies , Heart Arrest/mortality , Heart Arrest/therapy , Heart Block/mortality , Heart Block/therapy , Hemodynamics , Humans , Male , Middle Aged , Tachycardia, Supraventricular/mortality , Tachycardia, Supraventricular/therapy , Ventricular Function
6.
J Am Coll Cardiol ; 7(4): 925-32, 1986 Apr.
Article in English | MEDLINE | ID: mdl-3958351

ABSTRACT

To determine whether survival after permanent ventricular demand (VVI) pacing differs from survival after permanent dual chamber (DVI or DDD) pacing in patients with chronic high degree atrioventricular (AV) block (Mobitz type II or trifascicular block), 132 patients who received a VVI pacemaker (Group 1) and 48 patients who received a DVI or DDD pacemaker (Group 2) were followed up for 1 to 5 years. There was no significant difference in sex distribution, mean age or incidence of coronary heart disease, hypertension, valvular heart disease, diabetes mellitus, stroke or renal failure between Groups 1 and 2. Overall, the predicted cumulative survival rate at 1, 3 and 5 years was 89, 76 and 73%, respectively, for Group 1 and 95, 82 and 70%, respectively, for Group 2. In patients with preexistent congestive heart failure, the predicted cumulative survival rate at 1, 3 and 5 years was 85, 66 and 47%, respectively, for Group 1 (n = 53) and 94, 81 and 69%, respectively, for Group 2 (n = 20). The 5 year predicted cumulative survival rate was significantly lower in Group 1 patients with preexistent congestive heart failure than in Group 2 patients with the same condition (p less than 0.02). There was no significant difference in 5 year cumulative survival rate between Groups 1 and 2 for patients without preexistent congestive heart failure. The results suggest that permanent dual chamber pacing enhances survival to a greater extent than does permanent ventricular demand pacing in patients with high degree AV block and preexistent congestive heart failure.


Subject(s)
Heart Block/mortality , Heart Failure/complications , Pacemaker, Artificial , Age Factors , Aged , Coronary Disease/complications , Diabetes Complications , Female , Heart Block/complications , Heart Block/therapy , Humans , Hypertension/complications , Male , Middle Aged , Sex Factors
7.
South Med J ; 75(10): 1182-8, 1982 Oct.
Article in English | MEDLINE | ID: mdl-7123283

ABSTRACT

To explore the natural history of symptomatic sinus node dysfunction after permanent pacemaker implantation, we followed up 71 patients (27 with sinus arrest, 27 with unexplained sinus bradycardia, 14 with the bradycardia/tachycardia syndrome, and three with sinoatrial block) for four to 14 years after placement of a permanent ventricular pacemaker. Survival rates at one, five, and ten years were 88%, 75%, and 70%, respectively. Overall mortality was 31%. Patients with congestive heart failure had significantly lower survival rates than those without (P less than .03). Survival rates were significantly lower in patients with coronary artery disease than in those with conduction system disease only (P less than .01). Fourteen of the 19 patients whose cause of death was known died of cardiovascular disease, ten of complications of coronary artery disease. Thus, survival after pacemaker implantation is adversely and profoundly influenced by underlying cardiovascular disease, particularly coronary artery disease and its complications.


Subject(s)
Arrhythmia, Sinus/therapy , Pacemaker, Artificial , Adult , Age Factors , Aged , Arrhythmia, Sinus/complications , Arrhythmia, Sinus/mortality , Atrial Fibrillation/complications , Chronic Disease , Coronary Disease/complications , Diabetes Complications , Female , Follow-Up Studies , Heart Failure/complications , Humans , Hypertension/complications , Male , Middle Aged , Sex Factors
8.
J Chronic Dis ; 35(5): 341-9, 1982.
Article in English | MEDLINE | ID: mdl-7068809

ABSTRACT

We followed 120 patients 4-14 yr after permanent pacemaker implantation for high-grade atrioventricular block to assess the effect of sex, age at implantation, date of implantation and various chronic co-existent illnesses on survival. The overall survival rates were 91% at 1 yr, 63% at 5 yr and 41% at 10 yr. Patients with congestive heart failure demonstrated the lowest survival rates of all cohorts studied. Survival rates of patients with congestive heart failure were significantly lower than survival rates of patients without congestive heart failure and were also significantly lower than those of patients with conduction system disease only. Similarly, patients with coronary heart disease demonstrated significantly lower survival rates than both patients without coronary heart disease and patients with conduction system disease only. The presence of hypertension, valvular heart disease, diabetes mellitus or cerebral infarction influenced survival less adversely than congestive heart failure or coronary heart disease. Survival decreased progressively with increasing age; however, the differences were not significant. Sex and date of implantation had no apparent effect on survival. Thus, coronary heart disease and the presence of congestive heart failure appear to be the major determinants of survival following permanent pacemaker implantation for high-grade atrioventricular block.


Subject(s)
Heart Block/therapy , Pacemaker, Artificial , Aged , Coronary Disease/complications , Coronary Disease/mortality , Female , Follow-Up Studies , Heart Block/complications , Heart Block/mortality , Heart Failure/complications , Heart Failure/mortality , Humans , Male , Pacemaker, Artificial/mortality
9.
Comput Biol Med ; 1(2): 155-63, 1970 Dec.
Article in English | MEDLINE | ID: mdl-5524558
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