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1.
J Vis Exp ; (141)2018 11 20.
Article in English | MEDLINE | ID: mdl-30531726

ABSTRACT

Relative to the issues of off-target effects and the difficulty of inserting a long DNA fragment in the application of designer nucleases for genome editing, embryonic stem (ES) cell-based gene-targeting technology does not have these shortcomings and is widely used to modify animal/mouse genome ranging from large deletions/insertions to single nucleotide substitutions. Notably, identifying the relatively few homologous recombination (HR) events necessary to obtain desired ES clones is a key step, which demands accurate and reliable methods. Southern blotting and/or conventional PCR are often utilized for this purpose. Here, we describe the detailed procedures of using those two methods to identify HR events that occurred in mouse ES cells in which the endogenous Myh9 gene is intended to be disrupted and replaced by cDNAs encoding other nonmuscle myosin heavy chain IIs (NMHC IIs). The whole procedure of Southern blotting includes the construction of targeting vector(s), electroporation, drug selection, the expansion and storage of ES cells/clones, the preparation, digestion, and blotting of genomic DNA (gDNA), the hybridization and washing of probe(s), and a final step of autoradiography on the X-ray films. PCR can be performed directly with prepared and diluted gDNA. To obtain ideal results, the probes and restriction enzyme (RE) cutting sites for Southern blotting and the primers for PCR should be carefully planned. Though the execution of Southern blotting is time-consuming and labor-intensive and PCR results have false positives, the correct identification by Southern blotting and the rapid screening by PCR allow the sole or combined application of these methods described in this paper to be widely used and consulted by most labs in the identification of genotypes of ES cells and genetically modified animals.


Subject(s)
Blotting, Southern/methods , Gene Targeting/methods , Homologous Recombination/physiology , Mouse Embryonic Stem Cells/physiology , Polymerase Chain Reaction/methods , Animals , Base Sequence , Genotype , Mice , Mice, 129 Strain
2.
Sci Rep ; 7(1): 11211, 2017 09 11.
Article in English | MEDLINE | ID: mdl-28894257

ABSTRACT

Rbfox RNA-binding proteins play important roles in the regulation of alternative pre-mRNA splicing, but their role in other gene regulatory mechanisms is not well understood. Here, we show that Rbfox2 is a novel constituent of cytoplasmic stress granules, the translational silencing machinery assembled in response to cellular stress. We also show that the RNA binding activity of the Rbfox family protein is crucial for its localization into stress granules. To investigate the role of Rbfox2 in stress granules we used RNA-immunoprecipitation sequencing to identify cytoplasmic transcriptome-wide targets of Rbfox2. We report that a subset of cell cycle-related genes including retinoblastoma 1 is the target of Rbfox2 in cytoplasmic stress granules, and Rbfox2 regulates the retinoblastoma 1 mRNA and protein expression levels during and following stress exposure. Our study proposes a novel function for Rbfox2 in cytoplasmic stress granules.


Subject(s)
Cell Cycle , Cytoplasmic Granules/chemistry , RNA Splicing Factors/analysis , RNA, Messenger/analysis , Repressor Proteins/analysis , Retinoblastoma Binding Proteins/metabolism , Ubiquitin-Protein Ligases/metabolism , Gene Expression Profiling , HeLa Cells , Humans , Immunoprecipitation , Protein Binding , Sequence Analysis, RNA
3.
Nat Struct Mol Biol ; 21(10): 901-10, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25240799

ABSTRACT

RNA-binding proteins (RBPs) regulate numerous aspects of gene expression; thus, identification of their endogenous targets is important for understanding their cellular functions. Here we identified transcriptome-wide targets of Rbfox3 in neuronally differentiated P19 cells and mouse brain by using photoactivatable ribonucleoside-enhanced cross-linking and immunoprecipitation (PAR-CLIP). Although Rbfox3 is known to regulate pre-mRNA splicing through binding the UGCAUG motif, PAR-CLIP analysis revealed diverse Rbfox3 targets including primary microRNAs (pri-miRNAs) that lack the UGCAUG motif. Induced expression and depletion of Rbfox3 led to changes in the expression levels of a subset of PAR-CLIP-detected miRNAs. In vitro analyses revealed that Rbfox3 functions as a positive and a negative regulator at the stage of pri-miRNA processing to precursor miRNA (pre-miRNA). Rbfox3 binds directly to pri-miRNAs and regulates the recruitment of the microprocessor complex to pri-miRNAs. Our study proposes a new function for Rbfox3 in miRNA biogenesis.


Subject(s)
MicroRNAs/biosynthesis , Nerve Tissue Proteins/metabolism , Nuclear Proteins/metabolism , RNA Precursors/metabolism , RNA Processing, Post-Transcriptional/genetics , Animals , Binding Sites/genetics , Cell Line, Tumor , DNA-Binding Proteins , Immunoprecipitation , Mice , Nerve Tissue Proteins/genetics , Nuclear Proteins/genetics , Nucleotide Motifs/genetics , RNA Interference , RNA Precursors/genetics , RNA Splicing/genetics , RNA, Small Interfering , RNA-Binding Proteins/metabolism
4.
Biochem Biophys Res Commun ; 450(4): 1662-7, 2014 Aug 08.
Article in English | MEDLINE | ID: mdl-25044120

ABSTRACT

Rbfox3, a neuron-specific RNA-binding protein, plays an important role in neuronal differentiation during development. An isoform Rbfox3-d31, which excludes the 93-nucleotide cassette exon within the RNA recognition motif of chicken Rbfox3, has been previously identified. However, the cellular functions of Rbfox3-d31 remain largely unknown. Here we find that Rbfox3-d31 mRNA is highly expressed during the early developmental stages of the chicken embryo, while Rbfox3-d31 protein is barely detected during the same stage due to its rapid degradation mediated by the ubiquitin-proteasome pathway. Importantly, this degradation is specific to the Rbfox3-d31 isoform and it does not occur with full-length Rbfox3. Furthermore, suppression of Rbfox3-d31 protein degradation with the proteasome inhibitor MG132 attenuates the splicing activity of another Rbfox family member Rbfox2 by altering the subcellular localization of Rbfox2. These results suggest that Rbfox3-d31 functions as a repressor for the splicing activity of the Rbfox family and its protein level is regulated in an isoform-specific manner in vivo.


Subject(s)
Isoenzymes/metabolism , Nerve Tissue Proteins/metabolism , Proteasome Endopeptidase Complex/metabolism , Animals , Base Sequence , Chick Embryo , DNA Primers , Nerve Tissue Proteins/genetics , Proteolysis , RNA, Messenger/genetics , Reverse Transcriptase Polymerase Chain Reaction
5.
J Neurosci Res ; 91(10): 1303-11, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23918472

ABSTRACT

A2BP1 is considered to regulate alternative splicing of important neuronal transcripts and has been implicated in a variety of neurological and developmental disorders. A2BP1 was found in neuronal cells and was analyzed biochemically and morphologically. In this study, we prepared a specific antibody against A2BP1, anti-A2BP1, and carried out protein expression and localization analyses of A2BP1 in rat and mouse tissues. By Western blotting, A2BP1 showed tissue-dependent expression profiles and was expressed in a developmental-stage-dependent manner in the brain. A2BP1 was detected at high levels in neocortex and cerebellum in the rat brain. Immunohistochemical analyses demonstrated that A2BP1 was highly expressed in differentiated neurons but not in mitotically active progenitor cells in the cerebral cortex during developmental stages. In cortical neurons, A2BP1 had accumulated mainly in the nucleus and diffusely distributed in the cell body and dendrites. In differentiated primary cultured rat hippocampal neurons, although A2BP1 was enriched in the nucleus and diffusely distributed in the cytoplasm, it was found in a punctate distribution adjacent to synapses. The results suggest that in neuronal tissues A2BP1 plays important roles, which are regulated in a spatiotemporal manner.


Subject(s)
Brain/metabolism , Neurons/metabolism , RNA-Binding Proteins/biosynthesis , Animals , Blotting, Western , Brain/growth & development , Immunohistochemistry , Immunoprecipitation , Mice , Mice, Inbred ICR , RNA Splicing Factors , RNA-Binding Proteins/analysis , Rats , Rats, Sprague-Dawley , Transfection
6.
Curr Biol ; 23(8): 731-6, 2013 Apr 22.
Article in English | MEDLINE | ID: mdl-23562268

ABSTRACT

Nonmuscle myosin II (NMII) is thought to be the master integrator of force within epithelial apical junctions, mediating epithelial tissue morphogenesis and tensional homeostasis. Mutations in NMII are associated with a number of diseases due to failures in cell-cell adhesion. However, the organization and the precise mechanism by which NMII generates and responds to tension along the intercellular junctional line are still not known. We discovered that periodic assemblies of bipolar NMII filaments interlace with perijunctional actin and α-actinin to form a continuous belt of muscle-like sarcomeric units (∼400-600 nm) around each epithelial cell. Remarkably, the sarcomeres of adjacent cells are precisely paired across the junctional line, forming an integrated, transcellular contractile network. The contraction/relaxation of paired sarcomeres concomitantly impacts changes in apical cell shape and tissue geometry. We show differential distribution of NMII isoforms across heterotypic junctions and evidence for compensation between isoforms. Our results provide a model for how NMII force generation is effected along the junctional perimeter of each cell and communicated across neighboring cells in the epithelial organization. The sarcomeric network also provides a well-defined target to investigate the multiple roles of NMII in junctional homeostasis as well as in development and disease.


Subject(s)
Intercellular Junctions/metabolism , Myosin Type II/metabolism , Organ of Corti/metabolism , Actin Cytoskeleton/metabolism , Actinin/metabolism , Actins/metabolism , Animals , Heterocyclic Compounds, 4 or More Rings/metabolism , Mice , Microscopy, Fluorescence , Myosin Heavy Chains/genetics , Myosin Heavy Chains/metabolism , Myosin Type II/genetics , Rats
7.
J Cell Biol ; 200(4): 443-58, 2013 Feb 18.
Article in English | MEDLINE | ID: mdl-23420872

ABSTRACT

Alternative premRNA splicing is a major mechanism to generate diversity of gene products. However, the biological roles of alternative splicing during development remain elusive. Here, we focus on a neuron-specific RNA-binding protein, Rbfox3, recently identified as the antigen of the widely used anti-NeuN antibody. siRNA-mediated loss-of-function studies using the developing chicken spinal cord revealed that Rbfox3 is required to promote neuronal differentiation of postmitotic neurons. Numb premRNA encoding a signaling adaptor protein was found to be a target of Rbfox3 action, and Rbfox3 repressed the inclusion of an alternative exon via binding to the conserved UGCAUG element in the upstream intron. Depleting a specific Numb splice isoform reproduced similar neuronal differentiation defects. Forced expression of the relevant Numb splice isoform was sufficient to rescue, in an isoform-specific manner, postmitotic neurons from defects in differentiation caused by Rbfox3 depletion. Thus, Rbfox3-dependent Numb alternative splicing plays an important role in the progression of neuronal differentiation during vertebrate development.


Subject(s)
Alternative Splicing , Membrane Proteins/physiology , Nerve Tissue Proteins/physiology , Neurogenesis , Neurons/cytology , Nuclear Proteins/physiology , Animals , Binding Sites , Cell Line , Chick Embryo , DNA-Binding Proteins , Membrane Proteins/genetics , Mice , Nerve Tissue Proteins/genetics , Neural Tube/cytology , Neural Tube/metabolism , Protein Isoforms/metabolism , RNA Precursors/metabolism , RNA, Messenger/metabolism , Regulatory Elements, Transcriptional
8.
Nucleic Acids Res ; 39(8): 3064-78, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21177649

ABSTRACT

Fox-1 family (Fox) proteins, which consist of Fox-1 (A2BP1), Fox-2 (Rbm9) and Fox-3 (NeuN) in mammals, bind to the RNA element UGCAUG and regulate alternative pre-mRNA splicing. However the mechanisms for Fox-regulated splicing are largely unknown. We analyzed the expression pattern of the three Fox proteins as well as neural cell-specific alternative splicing of a cassette exon N30 of nonmuscle myosin heavy chain (NMHC) II-B in the mouse central nervous system. Histological and biochemical analyses following fluorescence-activated cell sorting demonstrate a positive correlation of N30 inclusion and Fox-3 expression. Further, we identified polypyrimidine tract binding protein-associated splicing factor (PSF) as an interacting protein with Fox-3 by affinity-chromatography. In cultured cells, enhancement of N30 inclusion by Fox-3 depends on the presence of PSF. PSF enhances N30 inclusion in a UGCAUG-dependent manner, although it does not bind directly to this element. Fox-3 is recruited to the UGCAUG element downstream of N30 in the endogenous NMHC II-B transcript in a PSF-dependent manner. This study is the first to identify PSF as a coactivator of Fox proteins and provides evidence that the Fox-3 and PSF interaction is an integral part of the mechanism by which Fox proteins regulate activation of alternative exons via a downstream intronic enhancer.


Subject(s)
Alternative Splicing , Nerve Tissue Proteins/metabolism , Neurons/metabolism , Nuclear Proteins/metabolism , RNA-Binding Proteins/metabolism , Animals , Central Nervous System/metabolism , DNA-Binding Proteins , Forkhead Transcription Factors/metabolism , Mice , Myosin Heavy Chains/genetics , Nonmuscle Myosin Type IIB/genetics , PTB-Associated Splicing Factor , RNA/metabolism , RNA Splicing Factors
9.
Mol Biol Cell ; 21(22): 3952-62, 2010 Nov 15.
Article in English | MEDLINE | ID: mdl-20861308

ABSTRACT

Ablation of nonmuscle myosin (NM) II-A or NM II-B results in mouse embryonic lethality. Here, we report the results of ablating NM II-C as well as NM II-C/II-B together in mice. NM II-C ablated mice survive to adulthood and show no obvious defects compared with wild-type littermates. However, ablation of NM II-C in mice expressing only 12% of wild-type amounts of NM II-B results in a marked increase in cardiac myocyte hypertrophy compared with the NM II-B hypomorphic mice alone. In addition, these hearts develop interstitial fibrosis associated with diffuse N-cadherin and ß-catenin localization at the intercalated discs, where both NM II-B and II-C are normally concentrated. When both NM II-C and II-B are ablated the B-C-/B-C- cardiac myocytes show major defects in karyokinesis. More than 90% of B-C-/B-C- myocytes demonstrate defects in chromatid segregation and mitotic spindle formation accompanied by increased stability of microtubules and abnormal formation of multiple centrosomes. This requirement for NM II in karyokinesis is further demonstrated in the HL-1 cell line derived from mouse atrial myocytes, by using small interfering RNA knockdown of NM II or treatment with the myosin inhibitor blebbistatin. Our study shows that NM II is involved in regulating cardiac myocyte karyokinesis by affecting microtubule dynamics.


Subject(s)
Cell Nucleus Division/physiology , Myocytes, Cardiac/metabolism , Myosin Heavy Chains/metabolism , Myosin Type II/metabolism , Nonmuscle Myosin Type IIB/metabolism , Animals , COS Cells , Cell Line , Cell Line, Tumor , Cell Nucleus Division/genetics , Chlorocebus aethiops , Female , HT29 Cells , HeLa Cells , Heart/embryology , Heart/growth & development , Humans , Lung/embryology , Lung/metabolism , Male , Mice , Mice, 129 Strain , Mice, Inbred C57BL , Mice, Knockout , Microscopy, Confocal , Microtubules/metabolism , Myocardium/metabolism , Myocytes, Cardiac/cytology , Myosin Heavy Chains/genetics , Myosin Type II/genetics , Nonmuscle Myosin Type IIB/genetics , RNA Interference
10.
Proc Natl Acad Sci U S A ; 107(33): 14645-50, 2010 Aug 17.
Article in English | MEDLINE | ID: mdl-20679233

ABSTRACT

Nonmuscle myosins (NMs) II-A and II-B are essential for embryonic mouse development, but their specific roles are not completely defined. Here we examine the isoforms and their domain specifically in vivo and in vitro by studying mice and cells in which nonmuscle myosin heavy chain (NMHC) II-A is genetically replaced by NMHC II-B or chimeric NMHC IIs that exchange the rod and head domains of NM II-A and II-B. In contrast with the failure of visceral endoderm formation resulting in embryonic day (E)6.5 lethality of A(-)/A(-) mice, replacement with NM II-B or chimeric NM IIs restores a normal visceral endoderm. This finding is consistent with NM II's role in cell adhesion and also confirms an essential, isoform-independent requirement for NM II in visceral endoderm function. The knock-in mice die between E9.5 and 12.5 because of defects in placenta formation associated with abnormal angiogenesis and cell migration, revealing a unique function for NM II-A in placenta development. In vitro results further support a requirement for NM II-A in directed cell migration and focal adhesion formation. These findings demonstrate an isoform-specific role for NM II-A during these processes, making replacement by another isoform, or chimeric NM II isoforms, less successful. The failure of these substitutions is not only related to the different kinetic properties of NM II-A and II-B, but also to their subcellular localization determined by the C-terminal domain. These results highlight the functions of the N-terminal motor and C-terminal rod domains of NM II and their different roles in cell-cell and cell-matrix adhesion.


Subject(s)
Embryo, Mammalian/metabolism , Fibroblasts/metabolism , Myosin Heavy Chains/metabolism , Nonmuscle Myosin Type IIA/metabolism , Nonmuscle Myosin Type IIB/metabolism , Animals , Binding Sites , Cell Adhesion , Cell Communication , Cells, Cultured , Embryo, Mammalian/cytology , Embryo, Mammalian/embryology , Female , Fibroblasts/cytology , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , Immunoblotting , Male , Mice , Mice, Inbred C57BL , Mice, Inbred Strains , Mice, Knockout , Microscopy, Confocal , Mutation , Myosin Heavy Chains/genetics , Nonmuscle Myosin Type IIA/genetics , Nonmuscle Myosin Type IIB/genetics , Placenta/embryology , Placenta/metabolism , Pregnancy , Time Factors
11.
J Biol Chem ; 284(45): 31052-61, 2009 Nov 06.
Article in English | MEDLINE | ID: mdl-19713214

ABSTRACT

NeuN (neuronal nuclei) is a neuron-specific nuclear protein which is identified by immunoreactivity with a monoclonal antibody, anti-NeuN. Anti-NeuN has been used widely as a reliable tool to detect most postmitotic neuronal cell types in neuroscience, developmental biology, and stem cell research fields as well as diagnostic histopathology. To date, however, the identity of its antigen, NeuN itself, has been unknown. Here, we identify NeuN as the Fox-3 gene product by providing the following evidence: 1) Mass spectrometry analysis of anti-NeuN immunoreactive protein yields the Fox-3 amino acid sequence. 2) Recombinant Fox-3 is recognized by anti-NeuN. 3) Short hairpin RNAs targeting Fox-3 mRNA down-regulate NeuN expression. 4) Fox-3 expression is restricted to neural tissues. 5) Anti-Fox-3 immunostaining and anti-NeuN immunostaining overlap completely in neuronal nuclei. We also show that a protein cross-reactive with anti-NeuN is the synaptic vesicle protein, synapsin I. Anti-NeuN recognizes synapsin I in immunoblots with one order of magnitude lower affinity than Fox-3, and does not recognize synapsin I using immunohistology. Fox-3 (also called hexaribonucleotide-binding protein 3 and D11Bwg0517e) contains an RNA recognition motif and is classified as a member of the Fox-1 gene family that binds specifically to an RNA element, UGCAUG. We demonstrate that Fox-3 functions as a splicing regulator using neural cell-specific alternative splicing of the non-muscle myosin heavy chain II-B pre-mRNA as a model. Identification of NeuN as Fox-3 clarifies an important element of neurobiology research.


Subject(s)
Multigene Family , Nerve Tissue Proteins/genetics , Nuclear Proteins/genetics , RNA-Binding Proteins/genetics , Amino Acid Sequence , Animals , Brain/cytology , Brain/metabolism , Cells, Cultured , DNA-Binding Proteins , Humans , Mice , Molecular Sequence Data , Myosin Heavy Chains/genetics , Nerve Tissue Proteins/chemistry , Nerve Tissue Proteins/metabolism , Neurons/chemistry , Neurons/metabolism , Nonmuscle Myosin Type IIB/genetics , Nuclear Proteins/chemistry , Nuclear Proteins/metabolism , Protein Transport , RNA Splicing , RNA-Binding Proteins/chemistry , RNA-Binding Proteins/metabolism , Sequence Alignment
12.
J Biol Chem ; 284(17): 11563-71, 2009 Apr 24.
Article in English | MEDLINE | ID: mdl-19240025

ABSTRACT

We report a novel isoform of non-muscle myosin II-C (NM II-C), NM II-C2, that is generated by alternative splicing of an exon, C2, encoding 41 amino acids in mice (33 in humans). The 41 amino acids are inserted into loop 2 of the NM II-C heavy chain within the actin binding region. Unlike most vertebrate non-muscle and smooth muscle myosin IIs, baculovirus-expressed mouse heavy meromyosin (HMM) II-C2 demonstrates no requirement for regulatory myosin light chain (MLC(20)) phosphorylation for maximum actin-activated MgATPase activity or maximum in vitro motility as measured by the sliding actin filament assay. In contrast, noninserted HMM II-C0 and another alternatively spliced isoform HMM II-C1, which contains 8 amino acids inserted into loop 1, are dependent on MLC(20) phosphorylation for both actin-activated MgATPase activity and in vitro motility ( Kim, K. Y., Kovacs, M., Kawamoto, S., Sellers, J. R., and Adelstein, R. S. (2005) J. Biol. Chem. 280, 22769-22775 ). HMM II-C1C2, which contains both the C1 and C2 inserts, does not require MLC(20) phosphorylation for full activity similar to HMM II-C2. These constitutively active C2-inserted isoforms of NM II-C are expressed only in neuronal tissue. This is in contrast to NM II-C1 and NM II-C0, both of which are ubiquitously expressed. Full-length NM II-C2-GFP expressed in COS-7 cells localizes to filaments in interphase cells and to the cytokinetic ring in dividing cells.


Subject(s)
Alternative Splicing , Myosin Light Chains/chemistry , Myosin Type II/chemistry , Actins/chemistry , Amino Acid Sequence , Animals , COS Cells , Chlorocebus aethiops , Dose-Response Relationship, Drug , Green Fluorescent Proteins/metabolism , Humans , Mice , Molecular Sequence Data , Neurons/metabolism , Phosphorylation , Sequence Homology, Amino Acid
13.
Biochem Biophys Res Commun ; 369(1): 124-34, 2008 Apr 25.
Article in English | MEDLINE | ID: mdl-18060863

ABSTRACT

We report the initial biochemical characterization of an alternatively spliced isoform of nonmuscle heavy meromyosin (HMM) II-B2 and compare it with HMM II-B0, the nonspliced isoform. HMM II-B2 is the HMM derivative of an alternatively spliced isoform of endogenous nonmuscle myosin (NM) II-B, which has 21-amino acids inserted into loop 2, near the actin-binding region. NM II-B2 is expressed in the Purkinje cells of the cerebellum as well as in other neuronal cells [X. Ma, S. Kawamoto, J. Uribe, R.S. Adelstein, Function of the neuron-specific alternatively spliced isoforms of nonmuscle myosin II-B during mouse brain development, Mol. Biol. Cell 15 (2006) 2138-2149]. In contrast to any of the previously described isoforms of NM II (II-A, II-B0, II-B1, II-C0 and II-C1) or to smooth muscle myosin, the actin-activated MgATPase activity of HMM II-B2 is not significantly increased from a low, basal level by phosphorylation of the 20kDa myosin light chain (MLC-20). Moreover, although HMM II-B2 can bind to actin in the absence of ATP and is released in its presence, it cannot propel actin in the sliding actin filament assay following MLC-20 phosphorylation. Unlike HMM II-B2, the actin-activated MgATPase activity of a chimeric HMM with the 21-amino acid II-B2 sequence inserted into the homologous location in the heavy chain of HMM II-C is increased following MLC-20 phosphorylation. This indicates that the effect of the II-B2 insert is myosin heavy chain specific.


Subject(s)
Actins/chemistry , Ca(2+) Mg(2+)-ATPase/chemistry , Molecular Motor Proteins/chemistry , Nonmuscle Myosin Type IIB/chemistry , Nonmuscle Myosin Type IIB/genetics , Actins/ultrastructure , Binding Sites , Enzyme Activation , Molecular Motor Proteins/ultrastructure , Motion , Muscle, Skeletal/chemistry , Nonmuscle Myosin Type IIB/ultrastructure , Protein Binding , Protein Conformation , Protein Isoforms/chemistry , Protein Isoforms/ultrastructure , RNA Splice Sites/genetics , Structure-Activity Relationship
14.
J Biol Chem ; 281(34): 24662-70, 2006 Aug 25.
Article in English | MEDLINE | ID: mdl-16790446

ABSTRACT

Nonmuscle myosin IIs play an essential role during cytokinesis. Here, we explore the function of an alternatively spliced isoform of nonmuscle myosin heavy chain (NMHC) II-C, called NMHC II-C1, in the A549 human lung tumor cell line during cytokinesis. NMHC II-C1 contains an insert of 8 amino acids in the head region of NMHC II-C. First, we show that there is a marked increase in both the mRNA encoding NMHC II-C1 and protein in tumor cell lines compared with nontumor cell lines derived from the same tissue. Quantification of the amount of myosin II isoforms in the A549 cells shows that the amounts of NMHC II-A and II-C1 protein are about equal and substantially greater than NMHC II-B. Using specific siRNAs to decrease NMHC II-C1 in cultured A549 cells resulted in a 5.5-fold decrease in the number of cells at 120 h, whereas decreasing NMHC II-A with siRNA does not affect cell proliferation. This decreased proliferation can be rescued by reintroducing NMHC II-C1 but not NMHC II-A or II-B into A549 cells, although noninserted NMHC II-C does rescue to a limited extent. Time lapse video microscopy revealed that loss of NMHC II-C1 leads to a delay in cytokinesis and prolongs it from 2 to 8-10 h. These findings are consistent with the localization of NMHC II-C1 to the intercellular bridge that attaches the two dividing cells during the late phases of cytokinesis. The results suggest a specific function for NMHC II-C1 in cytokinesis in the A549 tumor cell line.


Subject(s)
Cytokinesis/physiology , Myosin Heavy Chains/metabolism , Myosin Type II/metabolism , Cell Line, Tumor , Humans , Lung Neoplasms/metabolism , Lung Neoplasms/pathology , Myosin Heavy Chains/genetics , Myosin Type II/genetics , Protein Isoforms/genetics , Protein Isoforms/metabolism , RNA, Small Interfering , Transfection
15.
Mol Biol Cell ; 17(5): 2138-49, 2006 May.
Article in English | MEDLINE | ID: mdl-16481398

ABSTRACT

We report that the alternatively spliced isoforms of nonmuscle myosin heavy chain II-B (NHMC II-B) play distinct roles during mouse brain development. The B1-inserted isoform of NMHC II-B, which contains an insert of 10 amino acids near the ATP-binding region (loop 1) of the myosin heavy chain, is involved in normal migration of facial neurons. In contrast, the B2-inserted isoform, which contains an insert of 21 amino acids near the actin-binding region (loop 2), is important for postnatal development of cerebellar Purkinje cells. Deletion of the B1 alternative exon, together with reduced expression of myosin II-B, results in abnormal migration and consequent protrusion of facial neurons into the fourth ventricle. This protrusion is associated with the development of hydrocephalus. Restoring the amount of myosin II-B expression to wild-type levels prevents these defects, showing the importance of total myosin activity in facial neuron migration. In contrast, deletion of the B2 alternative exon results in abnormal development of cerebellar Purkinje cells. Cells lacking the B2-inserted isoform show reduced numbers of dendritic spines and branches. Some of the B2-ablated Purkinje cells are misplaced in the cerebellar molecular layer. All of the B2-ablated mice demonstrated impaired motor coordination.


Subject(s)
Alternative Splicing , Brain/growth & development , Hydrocephalus/genetics , Nonmuscle Myosin Type IIB/physiology , Animals , Brain/abnormalities , Brain/pathology , Cell Movement/genetics , Cell Surface Extensions/genetics , Cell Surface Extensions/pathology , Cerebellum/abnormalities , Cerebellum/growth & development , Cerebellum/pathology , Exons/genetics , Facial Nerve/chemistry , Facial Nerve/pathology , Facial Nerve/physiology , Hydrocephalus/pathology , Mice , Mice, Mutant Strains , Neurons/chemistry , Neurons/pathology , Neurons/physiology , Nonmuscle Myosin Type IIB/analysis , Nonmuscle Myosin Type IIB/genetics , Protein Isoforms , Purkinje Cells/chemistry , Purkinje Cells/pathology , Purkinje Cells/physiology , Sequence Deletion , Tissue Distribution , Transcription, Genetic
16.
Nucleic Acids Res ; 33(7): 2078-89, 2005.
Article in English | MEDLINE | ID: mdl-15824060

ABSTRACT

An intronic hexanucleotide UGCAUG has been shown to play a critical role in the regulation of tissue-specific alternative splicing of pre-mRNAs in a wide range of tissues. Vertebrate Fox-1 has been shown to bind to this element, in a highly sequence-specific manner, through its RNA recognition motif (RRM). In mammals, there are at least two Fox-1-related genes, ataxin-2 binding protein 1 (A2BP1)/Fox-1 and Fxh/Rbm9, which encode an identical RRM. Here, we demonstrate that both mouse Fxh and A2BP1 transcripts undergo tissue-specific alternative splicing, generating protein isoforms specific to brain and muscle. These tissue-specific isoforms are characterized for their abilities to regulate neural cell-specific alternative splicing of a cassette exon, N30, in the non-muscle myosin heavy chain II-B pre-mRNA, previously shown to be regulated through an intronic distal downstream enhancer (IDDE). All Fxh and A2BP1 isoforms with the RRM are capable of binding to the IDDE in vitro through the UGCAUG elements. Each isoform, however, shows quantitative differences in splicing activity and nuclear distribution in transfected cells. All Fxh isoforms and a brain isoform of A2BP1 show a predominant nuclear localization. Brain isoforms of both Fxh and A2BP1 promote N30 splicing much more efficiently than do the muscle-specific isoforms. Skeletal muscles express additional isoforms that lack a part of the RRM. These isoforms are incapable of activating neural cell-specific splicing and, moreover, can inhibit UGCAUG-dependent N30 splicing. These findings suggest that tissue-specific isoforms of Fxh and A2BP1 play an important role in determining tissue specificity of UGCAUG-mediated alternative splicing.


Subject(s)
Alternative Splicing , Carrier Proteins/physiology , RNA-Binding Proteins/physiology , Amino Acid Sequence , Animals , Brain/metabolism , Carrier Proteins/genetics , Carrier Proteins/metabolism , Cell Line , Cell Nucleus/chemistry , Enhancer Elements, Genetic , Exons , Humans , Introns , Mice , Molecular Sequence Data , Muscle, Skeletal/metabolism , Myosin Heavy Chains/genetics , Nonmuscle Myosin Type IIB , Protein Isoforms/genetics , Protein Isoforms/metabolism , RNA Precursors/chemistry , RNA Precursors/metabolism , RNA Splicing Factors , RNA, Messenger/chemistry , RNA, Messenger/metabolism , RNA-Binding Proteins/genetics , RNA-Binding Proteins/metabolism , Sequence Alignment
17.
J Biol Chem ; 280(24): 22769-75, 2005 Jun 17.
Article in English | MEDLINE | ID: mdl-15845534

ABSTRACT

Human families with single amino acid mutations in nonmuscle myosin heavy chain (NMHC) II-A (MYH9) and II-C (MYH14) have been described as have mice generated with a point mutation in NMHC II-B (MYH10). These mutations (R702C and N93K in human NMHC II-A, R709C in murine NMHC II-B, and R726S in human NMHC II-C) result in phenotypes affecting kidneys, platelets, and leukocytes (II-A), heart and brain (II-B), and the inner ear (II-C). To better understand the mechanisms underlying these defects, we characterized the in vitro activity of mutated and wild-type baculovirus-expressed heavy meromyosin (HMM) II-B and II-C. We also expressed two alternatively spliced isoforms of NMHC II-C which differ by inclusion/exclusion of eight amino acids in loop 1, with and without mutations. Comparison of the actin-activated MgATPase activity and in vitro motility shows that mutation of residues Asn-97 and Arg-709 in HMM II-B and the homologous residue Arg-722 (Arg-730 in the alternatively spliced isoform) in HMM II-C decreases both parameters but affects in vitro motility more severely. Analysis of the transient kinetics of the HMM II-B R709C mutant shows an extremely tight affinity of HMM for ADP and a very slow release of ADP from acto-HMM. Although mutations generally decreased HMM activity, the R730S mutation in HMM II-C, unlike the R730C mutation, had no effect on actin-activated MgATPase activity but decreased the rate of in vitro motility by 75% compared with wild type. Insertion of eight amino acids into the HMM II-C heavy chain increases both actin-activated MgATPase activity and in vitro motility.


Subject(s)
Alternative Splicing , Mutation , Myosin Heavy Chains/genetics , Myosin Type II/genetics , Nonmuscle Myosin Type IIB/chemistry , Nonmuscle Myosin Type IIB/genetics , Actins/chemistry , Adenosine Diphosphate/chemistry , Animals , Arginine/chemistry , Asparagine/chemistry , Ca(2+) Mg(2+)-ATPase/chemistry , Dose-Response Relationship, Drug , Genetic Vectors , Humans , Insecta , Kinetics , Mice , Models, Molecular , Mutagenesis, Site-Directed , Myosin Heavy Chains/chemistry , Myosin Subfragments/chemistry , Myosin Type II/chemistry , Myosins/chemistry , Phenotype , Point Mutation , Protein Isoforms , Protein Structure, Tertiary , Recombinant Proteins/chemistry
18.
J Biol Chem ; 279(53): 56042-52, 2004 Dec 31.
Article in English | MEDLINE | ID: mdl-15496418

ABSTRACT

Transcription of the nonmuscle myosin heavy chain II-A (NMHC-A) gene is regulated by various factors, including cell type, proliferation and differentiation stage, and extracellular stimuli. We have identified an intronic region (designated 32kb-150), which is located 32 kb downstream of the transcription start sites in the human NMHC-A gene, as a transcriptional regulatory region. 32kb-150 contains an interferon-stimulated response element (ISRE). By using HeLa and NIH3T3 cells, in which NMHC-A is constitutively expressed, interferon regulatory factor (IRF)-2 was found to be the only major protein, among the IRF family proteins, that bound to the ISRE in 32kb-150 both in vitro and in intact cells. IRF-2, which is known to either repress or activate target gene expression, acts as a transcriptional activator in the context of the 32kb-150 reporter gene. The carboxyl-terminal basic region of IRF-2 serves as an activation domain in this context. This is in contrast to its acting as a repressor domain in the context of the synthetic core ISRE. Furthermore, after treatment of promyelocytic HL-60 cells with 12-O-tetradecanoylphorbol-13-acetate (TPA), which triggers differentiation into macrophages, both NMHC-A expression and IRF-2 expression were found to be up-regulated with a similar time course. TPA treatment leads to recruitment of IRF-2 to 32kb-150 of the endogenous NMHC-A gene and acetylation of the core histones surrounding this region. In addition, the ISRE in the 32kb-150 reporter gene recruits IRF-2 and mediates TPA-induced activation of a reporter gene in HL-60 cells. Together, these results indicate that IRF-2 contributes to transcriptional activation of the NMHC-A gene via 32kb-150 during TPA-induced differentiation of HL-60 cells.


Subject(s)
DNA-Binding Proteins/physiology , Gene Expression Regulation , Nonmuscle Myosin Type IIA/biosynthesis , Repressor Proteins/physiology , Transcription Factors/physiology , Up-Regulation , Animals , Base Sequence , Blotting, Northern , Blotting, Western , Cell Adhesion , Cell Differentiation , Cell Line , Chromatin Immunoprecipitation , Conserved Sequence , DNA-Binding Proteins/metabolism , Gene Deletion , Genes, Reporter , Genetic Vectors , HL-60 Cells , HeLa Cells , Humans , Interferon Regulatory Factor-2 , Introns , Luciferases/metabolism , Macrophages/metabolism , Mice , Models, Genetic , Molecular Sequence Data , NIH 3T3 Cells , Plasmids/metabolism , Protein Binding , Repressor Proteins/metabolism , Sequence Homology, Nucleic Acid , Tetradecanoylphorbol Acetate/pharmacology , Transcription Factors/metabolism , Transcription, Genetic , Transcriptional Activation , Transfection
19.
Mol Biol Cell ; 15(6): 2568-79, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15034141

ABSTRACT

We generated mice harboring a single amino acid mutation in the motor domain of nonmuscle myosin heavy chain II-B (NMHC II-B). Homozygous mutant mice had an abnormal gait and difficulties in maintaining balance. Consistent with their motor defects, the mutant mice displayed an abnormal pattern of cerebellar foliation. Analysis of the brains of homozygous mutant mice showed significant defects in neuronal migration involving granule cells in the cerebellum, the facial neurons, and the anterior extramural precerebellar migratory stream, including the pontine neurons. A high level of NMHC II-B expression in these neurons suggests an important role for this particular isoform during neuronal migration in the developing brain. Increased phosphorylation of the myosin II regulatory light chain in migrating, compared with stationary pontine neurons, supports an active role for myosin II in regulating their migration. These studies demonstrate that NMHC II-B is particularly important for normal migration of distinct groups of neurons during mouse brain development.


Subject(s)
Cell Movement , Molecular Motor Proteins/chemistry , Molecular Motor Proteins/genetics , Neurons/cytology , Nonmuscle Myosin Type IIB/chemistry , Nonmuscle Myosin Type IIB/genetics , Point Mutation/genetics , Animals , Cells, Cultured , Cerebellum/abnormalities , Cerebellum/cytology , Cerebellum/metabolism , Facial Nerve/abnormalities , Facial Nerve/cytology , Facial Nerve/metabolism , Mice , Molecular Motor Proteins/metabolism , Myosin Heavy Chains/chemistry , Myosin Heavy Chains/genetics , Myosin Heavy Chains/metabolism , Nonmuscle Myosin Type IIB/metabolism , Protein Structure, Tertiary
20.
J Biol Chem ; 279(4): 2800-8, 2004 Jan 23.
Article in English | MEDLINE | ID: mdl-14594953

ABSTRACT

A previously unrecognized nonmuscle myosin II heavy chain (NMHC II), which constitutes a distinct branch of the nonmuscle/smooth muscle myosin II family, has recently been revealed in genome data bases. We characterized the biochemical properties and expression patterns of this myosin. Using nucleotide probes and affinity-purified antibodies, we found that the distribution of NMHC II-C mRNA and protein (MYH14) is widespread in human and mouse organs but is quantitatively and qualitatively distinct from NMHC II-A and II-B. In contrast to NMHC II-A and II-B, the mRNA level in human fetal tissues is substantially lower than in adult tissues. Immunofluorescence microscopy showed distinct patterns of expression for all three NMHC isoforms. NMHC II-C contains an alternatively spliced exon of 24 nucleotides in loop I at a location analogous to where a spliced exon appears in NMHC II-B and in the smooth muscle myosin heavy chain. However, unlike neuron-specific expression of the NMHC II-B insert, the NMHC II-C inserted isoform has widespread tissue distribution. Baculovirus expression of noninserted and inserted NMHC II-C heavy meromyosin (HMM II-C/HMM II-C1) resulted in significant quantities of expressed protein (mg of protein) for HMM II-C1 but not for HMM II-C. Functional characterization of HMM II-C1 by actin-activated MgATPase activity demonstrated a V(max) of 0.55 + 0.18 s(-1), which was half-maximally activated at an actin concentration of 16.5 + 7.2 microm. HMM II-C1 translocated actin filaments at a rate of 0.05 + 0.011 microm/s in the absence of tropomyosin and at 0.072 + 0.019 microm/s in the presence of tropomyosin in an in vitro motility assay.


Subject(s)
Myosin Heavy Chains/genetics , Myosin Type II/genetics , Alternative Splicing , Amino Acid Sequence , Animals , Base Sequence , Exons , Humans , Immunoblotting , Mice , Molecular Sequence Data , Myosin Heavy Chains/analysis , Myosin Type II/analysis , Organ Specificity , Phylogeny , Sequence Analysis
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