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1.
AJNR Am J Neuroradiol ; 43(3): 361-367, 2022 03.
Article in English | MEDLINE | ID: mdl-35177546

ABSTRACT

BACKGROUND AND PURPOSE: Long-range connections are more severely damaged and relevant for cognition in long-standing MS. However, the evolution of such coordinated network damage in patients with MS is unclear. We investigated whether short- and long-range structural connections sustained equal damage in early-stage MS. MATERIALS AND METHODS: Sixteen patients with early-stage MS and 17 healthy controls were scanned by high-resolution, multishell diffusion imaging on 7T MR imaging and assessed cognitively. We investigated macrostructural properties in short- and long-range fibers and of microstructural metrics derived from 2 quantitative diffusion MR imaging models: DTI and neurite orientation dispersion and density imaging. RESULTS: Patients had significant WM integrity damage-that is, higher radial diffusivity and a lower intracellular volume fraction in the focal WM lesions. Compared with the healthy controls, the patients had noticeable microstructure changes in both short- and long-range fibers, including increased radial diffusivity, mean diffusivity, and axial diffusivity. Z scores further indicated greater damage in the short-range fibers than in the long-range fibers. CONCLUSIONS: Our findings demonstrate that more severe demyelination preceding axonal degeneration occurs in short-range connections but not in long-range connections in early-stage MS, suggesting the possibility that there are cortical lesions that are undetectable by current MR imaging.


Subject(s)
White Matter , Brain/diagnostic imaging , Diffusion Magnetic Resonance Imaging/methods , Humans , Magnetic Resonance Imaging/methods , Neurites , White Matter/pathology
2.
Plant Biol (Stuttg) ; 24(2): 313-322, 2022 Mar.
Article in English | MEDLINE | ID: mdl-34741387

ABSTRACT

Soybean (Glycine max L.) is an important oil, food and economic crop in the world. High salinity severely affects the growth and yield of soybean. Overexpressing a specific anti-retroviral transcription factor by biotechnology is an effective way to cultivate new stress-tolerant varieties of soybean. TGA transcription factor is a subfamily of bZIP and plays an important role in abiotic stress responses. A TGA subfamily gene GmTGA13 was cloned and the gene expression, subcellular localization and transcriptional activity were measured. Through the Ag. tumefaciens mediated flower dip method and the Ag. rhizogenes mediated transformation of soybean hairy roots, the transgenic Arabidopsis and the 'combination' soybean plants of overexpressing GmTGA13 were obtained. The two types of transgenic plants were treated with salt stress respectively, and the related physiological indexes were determined. Furthermore, the expression levels of five abiotic stress responsive genes were analyzed in GmTGA13 overexpression hairy roots. GmTGA13 gene was highly expressed in roots and significantly induced by saline stress in soybean. GmTGA13 encoded a nuclear localization protein and had transcriptional activation activity. Overexpression of GmTGA13 enhanced the saline stress tolerance of transgenic Arabidopsis and the 'combination' soybean plants. Furthermore, overexpression of GmTGA13 enhanced the expression of the stress responsive genes in transgenic soybean hairy roots. In conclusion, overexpression of GmTGA13 is beneficial to the absorption of K+ and Ca2+ by the cell, thereby regulating the ion homeostasis in the cell balance. GmTGA13 enhanced salt resistance of plants by regulating the expression of many stress-responsive genes.


Subject(s)
Glycine max , Plant Proteins , Salt Stress , Transcription Factors , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified/metabolism , Glycine max/genetics , Glycine max/metabolism , Stress, Physiological , Transcription Factors/genetics , Transcription Factors/metabolism
3.
Zhonghua Nei Ke Za Zhi ; 58(8): 599-601, 2019 Aug 01.
Article in Chinese | MEDLINE | ID: mdl-31365983

ABSTRACT

Carotid web is a rare risk factor of ischemic stroke. A total of 32 (0.54%) patients with carotid web were finally diagnosed in 5 943 patients who underwent carotid computerized tomography angiography (CTA) in two hospitals. Only one patient received carotid endarterectomy that pathological findings were fibrous tissue hyperplasia of vascular wall with mucinous degeneration. Stent implantation was administrated in two cases. Among 13 asymptomatic patients, the observational follow-up period was (20.9±12.4) months without strokes. Carotid web is a rare aberration. Asymptomatic patients with carotid web are usually silent. Large sized cohort and long-term follow-up are further needed.


Subject(s)
Carotid Artery, Internal/diagnostic imaging , Carotid Stenosis/diagnostic imaging , Computed Tomography Angiography , Stents/adverse effects , Carotid Artery, Internal/surgery , Carotid Stenosis/complications , Carotid Stenosis/diagnosis , Carotid Stenosis/surgery , Cohort Studies , Endarterectomy, Carotid/methods , Fibromuscular Dysplasia/complications , Follow-Up Studies , Humans , Risk Factors , Stroke/etiology , Stroke/physiopathology
4.
Andrology ; 7(2): 244-250, 2019 03.
Article in English | MEDLINE | ID: mdl-30461215

ABSTRACT

BACKGROUND: Cold-inducible RNA-binding protein (CIRBP) is associated with cell stress. However, its upstream regulatory factors are still largely unknown. OBJECTIVES: This study investigated whether CIRBP expression was regulated by transforming growth factor beta (TGF-ß) during the process of heat-induced testicular damage. MATERIALS AND METHODS: Ten male adult ICR mice were allocated to heat treatment (scrotal hyperthermia at 43 °C for 30 min, n = 5) and control group (n = 5); CIRBP and TGF-ß1, TGF-ß2, and TGF-ß3 expression levels in the testis in mRNA and protein were analyzed. Then, we conducted in vivo and in vitro studies to investigate the regulatory effects of TGF-ß on CIRBP. In the in vivo study, male adult ICR mice were subjected to testicular hyperthermia followed by a local testicular injection of TGF-ß antagonist (non-selective TGF-ß I/II receptor inhibitor, 5 µg or 10 µg). In the in vitro study, GC2-spd cells were cultured under 43 °C for 30 min or with different TGF-ß isoforms (10 ng/mL), and CIRBP expression levels in the testis and GC2-spd cells were analyzed 24 and 48 h, respectively, after treatment. RESULTS: As a result, heat treatment significantly downregulated the relative CIRBP mRNA and protein expression (p = 0.006 and 0.011), and significantly upregulated TGF-ß2 and TGF-ß3 expression levels (p = 0.022 and 0.04, for mRNA, and p = 0.001 for both protein levels). Local testicular injection of 10 µg TGF-ß antagonist significantly attenuated heat-induced histological damage to the testes and CIRBP downregulation (p = 0.038). Furthermore, TGF-ß2 and TGF-ß3 significantly downregulated CIRBP mRNA and protein expression in GC2-spd cells (all p < 0.01), exerting a similar effect to heat treatment. DISCUSSION AND CONCLUSION: Our in vivo and in vitro experiments demonstrated that heat-induced CIRBP downregulation in the testes was mediated by the upregulation of TGF-ß. Further studies are needed to clarify the molecular mechanisms underlying these processes.


Subject(s)
RNA-Binding Proteins/metabolism , Testis/metabolism , Transforming Growth Factor beta/metabolism , Animals , Fever/complications , Fever/metabolism , Male , Mice , Mice, Inbred ICR , Testis/pathology
5.
Antibiotics (Basel) ; 7(2)2018 Apr 23.
Article in English | MEDLINE | ID: mdl-29690620

ABSTRACT

This perspective paper follows up on earlier communications on bacteriophage therapy that we wrote as a multidisciplinary and intercontinental expert-panel when we first met at a bacteriophage conference hosted by the Eliava Institute in Tbilisi, Georgia in 2015. In the context of a society that is confronted with an ever-increasing number of antibiotic-resistant bacteria, we build on the previously made recommendations and specifically address how the Nagoya Protocol might impact the further development of bacteriophage therapy. By reviewing a number of recently conducted case studies with bacteriophages involving patients with bacterial infections that could no longer be successfully treated by regular antibiotic therapy, we again stress the urgency and significance of the development of international guidelines and frameworks that might facilitate the legal and effective application of bacteriophage therapy by physicians and the receiving patients. Additionally, we list and comment on several recently started and ongoing clinical studies, including highly desired double-blind placebo-controlled randomized clinical trials. We conclude with an outlook on how recently developed DNA editing technologies are expected to further control and enhance the efficient application of bacteriophages.

6.
Reprod Domest Anim ; 53(3): 636-643, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29430805

ABSTRACT

P38α mitogen-activated protein kinase (MAPK), which is a member of the canonical MAPK family, is activated in response to various extracellular stresses and plays a role in multiple cellular processes. In this study, we investigated the expression, subcellular localization and functional roles of p38α MAPK during the meiotic maturation of rat oocytes. We found that p38α MAPK phosphorylation (p-p38α MAPK, indicative of p38α MAPK activation) was low at the germinal vesicle (GV) stage, increased 3 hr after germinal vesicle breakdown (GVBD) and maintained its maximum at metaphase I (MI) or metaphase II (MII). The p-p38α MAPK mainly accumulated in the GV and had no obvious expression in the nucleus. From GVBD to MII, p-p38α MAPK was distributed in the cytoplasm around either the chromosomes or the spindle. We used SB203580, an inhibitor of p38α MAPK, to investigate the possible functional role of p38α MAPK during rat oocyte meiotic maturation. Treatment of GV stage oocytes with 20 µM SB203580 blocked p-p38α MAPK activity, and the spindles appeared abnormal. Additionally, the rate of GVBD after 3 hr of culture with 20 µM SB203580 (58.8%) was significantly inhibited compared with the control (82.5%, p < .05), and the polar body extrusion rate after 12 hr of culture with SB203580 was also significantly decreased compared with the control (40.1% vs 73.3%, p < .05). Taken together, these data indicate that p38α MAPK may play a vital role in rat oocyte meiotic maturation.


Subject(s)
Mitogen-Activated Protein Kinase 14/metabolism , Oocytes/cytology , Oocytes/enzymology , Animals , Enzyme Inhibitors/pharmacology , Female , Imidazoles/pharmacology , Meiosis/physiology , Mitogen-Activated Protein Kinase 14/antagonists & inhibitors , Phosphorylation , Pyridines/pharmacology , Rats, Sprague-Dawley
7.
Curr Microbiol ; 75(5): 611-619, 2018 May.
Article in English | MEDLINE | ID: mdl-29282504

ABSTRACT

Bacterial contamination on seafood resulting from unhygienic food-handling practices causes foodborne diseases and significant revenue losses. Moreover, control measures are complicated by a high prevalence of antibiotic-resistant bacteria. Alternative measures such as the phage therapy, therefore, is considered as an environmental and consumer-friendly biological control strategy for controlling such bacterial contamination. In this study, we determined the effectiveness of a bacteriophage cocktail in controlling E. coli strains [JM 109, ATCC 13706 and the, extended spectrum beta-lactamase resistant strain (ATCC BAA 196)] and S. enterica subsp. enterica (ATCC 13311) as single and combined contaminants of the edible oysters. Five different E. coli-specific phages (belonging to the Siphoviridae family) and a Salmonella phage (belonging to the Tectiviridae family) were successfully isolated from sewage water samples taken from a local sewage treatment plan in the Sunshine Coast region of Australia. Phage treatments applied to the pathogens when they were presented on the oysters as either single or combined hosts, resulted in significant decrease of the number of these bacteria on edible oysters. Results obtained indicated that bacteriophages could have beneficial applications in oyster-processing plants in controlling pathogenic bacterial infestations. This study thus contributes towards ongoing international efforts into the effective use of bacteriophages for biological control purposes.


Subject(s)
Bacteriophages/physiology , Food Contamination/prevention & control , Ostreidae/microbiology , Shellfish/microbiology , Animals , Bacteriophages/genetics , Bacteriophages/isolation & purification , Biological Control Agents/isolation & purification , Biological Control Agents/pharmacology , Escherichia coli/growth & development , Escherichia coli/virology , Food Contamination/analysis , Salmonella enterica/growth & development , Salmonella enterica/virology , Sewage/virology
8.
Genet Mol Res ; 14(3): 11543-50, 2015 Sep 28.
Article in English | MEDLINE | ID: mdl-26436395

ABSTRACT

This study aimed to explore the clinical value of the CD4(+) T cell ATP levels in patients with renal cell carcinoma through the application of the ImmuKnow(TM)-Cylex(®) assay. We recruited 104 patients with renal cancer who had undergone surgery at Fuzhou General Hospital from March 2009 to June 2012, and were subsequently treated by dendritic cell and cytokine-induced killer cell bio-therapy or interferon-α therapy. The changes in CD4(+) T cell ATP levels were detected at the perioperative period and at 10 days, 1 month, 3 months, and 1 year after the surgery using the ImmuKnow assay. In addition, the differences in ATP levels in different therapy groups were compared and the prognosis conditions were analyzed. Our results demonstrated that no significant difference in the ATP levels occurred at different time points; furthermore, there were no obviously different ATP levels between the different therapy groups, and the ATP levels were found to have no clinical significance for the assessment of renal cancer prognosis. Overall, this study suggested that CD4(+) T cell ATP levels as detected by the ImmuKnow assay have no obvious clinical value in patients with renal cancer.


Subject(s)
Carcinoma, Renal Cell/immunology , Immunoassay/methods , Kidney Neoplasms/immunology , Adenosine Triphosphate/metabolism , Adult , Aged , Aged, 80 and over , CD4-Positive T-Lymphocytes , Carcinoma, Renal Cell/drug therapy , Cytokine-Induced Killer Cells/immunology , Female , Humans , Interferon-alpha/therapeutic use , Kaplan-Meier Estimate , Male , Middle Aged , Prognosis
9.
Genet Mol Res ; 14(2): 5943-9, 2015 Jun 01.
Article in English | MEDLINE | ID: mdl-26125793

ABSTRACT

The Timaliidae, a diverse family of oscine passerine birds, has long been a subject of debate regarding its phylogeny. The mitochondrial cytochrome c oxidase subunit I (COI) gene has been used as a powerful marker for identification and phylogenetic studies of animal species. In the present study, we analyzed the COI barcodes of 71 species from 21 genera belonging to the family Timaliidae. Every bird species possessed a barcode distinct from that of other bird species. Kimura two-parameter (K2P) distances were calculated between barcodes. The average genetic distance between species was 18 times higher than the average genetic distance within species. The neighbor-joining method was used to construct a phylogenetic tree and all the species could be discriminated by their distinct clades within the phylogenetic tree. The results indicate that some currently recognized babbler genera might not be monophyletic, with the COI gene data supporting the hypothesis of polyphyly for Garrulax, Alcippe, and Minla. Thus, DNA barcoding is an effective molecular tool for Timaliidae species identification and phylogenetic inference.


Subject(s)
DNA Barcoding, Taxonomic , DNA/genetics , Passeriformes/genetics , Phylogeny , Animals , Electron Transport Complex IV/genetics
10.
Genet Mol Res ; 13(3): 7411-9, 2014 Sep 12.
Article in English | MEDLINE | ID: mdl-25222240

ABSTRACT

A DNA barcode is a short sequence of standardized genomic region that is specific to a species. According to studies of bird species, the 694-bp sequence of the mitochondrial gene encoding cytochrome c oxidase 1 (COI) is extremely useful for species identification and phylogeny. In the present study, we analyzed the COI barcodes of 31 species from 18 genera belonging to the Phasianidae family in China. Kimura two-parameter (K2P) distances were calculated between barcodes. We found that the average genetic distance between congeneric species was 24 times higher compared to the average genetic distance within species. Each bird species had a barcode that was distinct to all other bird species. The neighbor-joining method was used to construct a phylogenetic tree, which grouped all of the genera into 2 divergent clades. In conclusion, DNA barcoding is an effective molecular tool for Phasianidae species identification and phylogenetic inference.


Subject(s)
Birds/classification , Birds/genetics , DNA Barcoding, Taxonomic , Evolution, Molecular , Animals , China , Cluster Analysis , Electron Transport Complex IV/genetics , Genes, Mitochondrial , Genotype , Phylogeny
11.
Br J Cancer ; 110(4): 1034-44, 2014 Feb 18.
Article in English | MEDLINE | ID: mdl-24423925

ABSTRACT

BACKGROUND: The purpose of this study was to confirm that RRM2 as a novel target of HPVE7 involved in cervical cancer angiogenesis. METHODS: Gene expression was analysed by RT-qPCR, western blot and immunohistochemistry in cervical cancer tissue and cell lines. Luciferase reporter assay was used to determine the activities of various RRM2 promoters. Secreted VEGF was measured by ELISA. RRM2-mediated capillary tube formation induced by HPVE7 in cervical cancer cells were evaluated using human umbilical vein endothelial cells in vitro. ROS induced by RRM2 in cercal cancer cells was confirmed by flow cytometry. The growth of cervical cancer cell overexpression RRM2 was examined by nude mouse xenograft. RESULTS: RRM2 as a novel downstream target for HPVE7 was upregulated by it at the transcriptional level through the E7-pRb interaction and binding of E2F to the RRM2 promoter region. Immunohistochemical analysis showed that the level of RRM2 positively correlated with the HPVE7 level in human cervical cancer. Functionally, overexpression of RRM2 enhanced the expression of HIF-1α and VEGF via activation of the ERK1/2 signalling pathway in cervical cancer cells, and significantly associated with increased microvessel densities in cervical cancer tissues. In vitro, HPVE7 stimulated RRM2-dependent capillary tube formation by HUVECs, and RRM2-enhanced angiogenesis was VEGF dependent. RRM2-activated ERK1/2 pathway was mediated through production of ROS. In the xenograft mouse model, overexpression of RRM2 in cervical cancer cells enhanced tumour growth as well as microvessel densities. CONCLUSION: HPVE7 induces upregulation of RRM2, which then promotes cervical carcinogenesis via ROS-ERK1/2-HIF-1α-VEGF-induced angiogenesis. Thus, the inhibition of RRM2 activity may be a novel therapeutic strategy for human cervical cancer.


Subject(s)
Extracellular Signal-Regulated MAP Kinases/metabolism , Hypoxia-Inducible Factor 1, alpha Subunit/metabolism , Neovascularization, Pathologic/virology , Papillomavirus E7 Proteins/metabolism , Ribonucleoside Diphosphate Reductase/metabolism , Uterine Cervical Neoplasms/blood supply , Vascular Endothelial Growth Factor A/metabolism , Animals , Base Sequence , Cell Line, Tumor , Cell Proliferation , Female , HeLa Cells , Humans , MAP Kinase Signaling System , MCF-7 Cells , Mice , Mice, Inbred BALB C , Mice, Nude , Molecular Sequence Data , Neoplasm Transplantation , Papillomavirus E7 Proteins/genetics , Promoter Regions, Genetic , RNA Interference , RNA, Small Interfering , Reactive Oxygen Species/metabolism , Ribonucleoside Diphosphate Reductase/biosynthesis , Ribonucleoside Diphosphate Reductase/genetics , Transcription, Genetic , Uterine Cervical Neoplasms/genetics , Uterine Cervical Neoplasms/virology
12.
J Microsc ; 247(3): 220-7, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22906009

ABSTRACT

Focused ion beam milling at cryogenic temperatures (cryo-FIB) is a valuable tool that can be used to thin vitreous biological specimens for subsequent imaging and analysis by cryo-transmission electron microscopy (cryo-TEM) in a frozen-hydrated state. This technique offers the potential benefit of eliminating the mechanical artefacts that are typically found with cryo-ultramicrotomy. However, due to the additional complexity in transferring samples in and out of the FIB, contamination and devitrification of the amorphous ice is commonly encountered. To address these problems, we have designed a sample cryo-shuttle that directly and specifically accepts Polara TEM cartridges to simplify the transfer process between FIB and TEM. We optimized several parameters in the cryo-FIB and cryo-TEM processes using the quality of the samples' ice as an indicator and demonstrated high-quality milling with large mammalian cells. By comparing the results from HeLa cells to those from Escherichia coli cells, we discuss some of the artefacts and challenges we have encountered using this technique.


Subject(s)
Artifacts , Cryoelectron Microscopy/methods , Escherichia coli/ultrastructure , Microscopy, Electron, Transmission/methods , Animals , Cryoelectron Microscopy/instrumentation , Cryopreservation/instrumentation , Cryopreservation/methods , Cryoultramicrotomy/methods , HeLa Cells , Humans , Image Enhancement/methods , Mammals , Microscopy, Electron, Transmission/instrumentation , Specimen Handling/methods
13.
Vaccine ; 22(21-22): 2730-6, 2004 Jul 29.
Article in English | MEDLINE | ID: mdl-15246604

ABSTRACT

Previous studies have failed to estimate the size of population at risk and underestimated the incidence of varicella among susceptible population. In this study, we calculated the incidence of varicella and its complications in Taiwan based on a life table method, in which the size of population at risk was taken into account. Population-based data were obtained from the Bureau of National Health Insurance. The age-specific incidences estimated by the uncorrected and corrected methods were compared. The incidence of varicella increased sharply after infancy and peaked at 16.7% in children aged 5 years. A correction which assumes the introduction of varicella vaccine resulted in a higher incidence of 19.5% in children aged 5 years. The lifetime cumulative incidence increased to around 76%. Sensitive surveillance of varicella and correct incidence estimate among susceptible population are essential in countries that have implemented or are about to implement varicella vaccination.


Subject(s)
Chickenpox/epidemiology , Adolescent , Adult , Age Factors , Chickenpox/complications , Chickenpox Vaccine , Child , Child, Preschool , Female , Hospitalization , Humans , Infant , Life Tables , Male , Mass Vaccination , Middle Aged , Population , Population Surveillance , Risk Assessment , Taiwan/epidemiology
14.
Biochemistry (Mosc) ; 66(8): 904-8, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11566061

ABSTRACT

Mycobacterium tuberculosis Hsp16.3, a member of a small heat shock protein family, has chaperone-like activity in vitro and suppresses thermally or chemically induced aggregation of proteins. The nature of the interactions between Hsp16.3 and the denatured substrate proteins was investigated. A dramatic enhancement of chaperone-like activity of Hsp16.3 upon increasing temperature was accompanied by decreased ANS-detectable surface hydrophobicity. Hsp16.3 exhibited significantly enhanced chaperone-like activity after preincubation at 100 degrees C with almost unchanged surface hydrophobicity. The interaction between Hsp16.3 and dithiothreitol-treated insulin B chains was markedly weakened in the presence of NaCl but greatly enhanced by the addition of a low-polarity alcohol, accompanied by significantly increased and decreased surface hydrophobicity, respectively. A working model for Hsp16.3 binding to its substrate proteins is proposed.


Subject(s)
Heat-Shock Proteins/metabolism , Insulin/metabolism , Molecular Chaperones/metabolism , Mycobacterium tuberculosis/metabolism , Alcohols/chemistry , Alcohols/metabolism , Dithiothreitol/chemistry , Dithiothreitol/metabolism , Heat-Shock Proteins/chemistry , Insulin/chemistry , Molecular Chaperones/chemistry , Mycobacterium tuberculosis/chemistry , Protein Binding/physiology , Protein Subunits , Sodium Chloride/chemistry , Sodium Chloride/metabolism , Static Electricity
15.
Biochem Biophys Res Commun ; 284(4): 942-7, 2001 Jun 22.
Article in English | MEDLINE | ID: mdl-11409884

ABSTRACT

The in vitro chaperone-like activity of Mycobacterium tuberculosis small heat shock protein Hsp16.3 was found to be dramatically enhanced to the same extent after preheat treatment at or over 60 degrees C. Structural analysis using gel filtration, native pore-gradient PAGE, nondenaturing PAGE, and far-UV CD spectroscopy consistently revealed no significant difference between the native and the preheated Hsp16.3 proteins. However, near-UV CD spectroscopy clearly demonstrated that the tertiary structure of preheated Hsp16.3 is quite similar to its native conformation, with a minor but significant difference. Further analysis using differential scanning calorimetry indicated that Hsp16.3 exhibited a structural transition near 60 degrees C. All these results together indicate that Hsp16.3 suffers a phase change at approximately 60 degrees C, which seem to remove a structural energy barrier for the protein to refold to a conformational status with increased chaperone-like activity.


Subject(s)
Bacterial Proteins , Chaperonins/chemistry , Chaperonins/metabolism , Insulin/chemistry , Mycobacterium tuberculosis/metabolism , Calorimetry, Differential Scanning , Circular Dichroism , Dithiothreitol/pharmacology , Hot Temperature , Protein Conformation , Protein Denaturation , Spectrophotometry, Ultraviolet , Thermodynamics
16.
J Clin Microbiol ; 39(7): 2541-7, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11427566

ABSTRACT

We have developed a PCR-based assay which allows the detection of staphylococci at the genus level by targeting the tuf gene, which encodes the elongation factor Tu. Degenerate PCR primers derived from consensus regions of several tuf genes were used to amplify a target region of 884 bp from 11 representative staphylococcal species. Subsequently, the entire nucleotide sequence of these amplicons was determined. The analysis of a multiple alignment of these sequences revealed regions conserved among staphylococci but distinct from those of other gram-positive bacteria genetically related to staphylococci. PCR primers complementary to these regions could amplify specifically and efficiently a DNA fragment of 370 bp for all of 27 different staphylococcal species tested. There was no amplification with genomic DNA prepared from 53 nonstaphylococcal species tested to verify the specificity of the assay (20 gram positive and 33 gram negative). Furthermore, this assay amplified efficiently all 27 American Type Culture Collection (ATCC) staphylococcal reference strains as well as 307 clinical isolates of staphylococci from the Québec City region. Analysis of the multiple sequence alignment for the 884-bp fragment for the 11 staphylococcal species as well as comparison of the sequences for the 370-bp amplicon from five unrelated ATCC and clinical strains for each of the species S. aureus, S. epidermidis, S. haemolyticus, S. hominis, and S. saprophyticus demonstrated sufficient interspecies polymorphism to generate genus- and species-specific capture probes. This sequence information allowed the development of Staphylococcus-specific and species-specific (targeting S. aureus, S. epidermidis, S. haemolyticus, S. hominis, or S. saprophyticus) capture probes hybridizing to the 370-bp amplicon. In conclusion, this PCR assay is suitable for detection of staphylococci at both genus and species levels.


Subject(s)
Peptide Elongation Factor Tu/genetics , Polymerase Chain Reaction/methods , Staphylococcus/classification , DNA Primers , DNA, Bacterial/analysis , DNA, Bacterial/genetics , Genes, Bacterial , Humans , Molecular Sequence Data , Phylogeny , Sensitivity and Specificity , Sequence Analysis, DNA , Species Specificity , Staphylococcal Infections/microbiology , Staphylococcus/genetics , Staphylococcus/isolation & purification
17.
Expert Rev Mol Med ; 3(27): 1-14, 2001 Nov 08.
Article in English | MEDLINE | ID: mdl-14585149

ABSTRACT

Group B streptococci (GBS) are an important cause of neonatal sepsis and meningitis, and maternal infection. Although the pathogenesis of GBS infection is not well understood, several virulence factors have been identified. Two prevention strategies have been proposed: chemoprophylaxis and immunoprophylaxis. Implementation of selective intrapartum chemoprophylaxis on the basis of either screening or risk assessment has led to a substantial decrease in the morbidity and mortality of GBS disease in both mothers and infants. Penicillin remains the antibiotic of choice with no reported resistant GBS so far, whereas resistance of 10-20% of GBS to erythromycin and clindamycin has been reported in North America. Chemoprophylaxis based on screening requires optimal detection methods for GBS, which involve selective broth culture of combined vaginal and anal samples. Other conventional methods are useful for rapid identification of heavily colonised women, but are unreliable for the detection of light GBS colonisation because of poor sensitivity. GBS-specific polymerase chain reaction (PCR) assays using real-time PCR coupled with fluorescence-labelling technology offer powerful tools for sensitive and specific, yet rapid (less than 1 h), detection of GBS directly from clinical specimens at the time of delivery. The application of these assays to the current prevention strategies will simplify the prevention practice and rationalise the use of antibiotics. Immunoprophylaxis relies on the development of new vaccines against GBS, and active research is being conducted in this area.

18.
Expert Rev Mol Diagn ; 1(2): 175-81, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11901812

ABSTRACT

Group B streptococci (GBS) are an important cause of neonatal sepsis and meningitis. Implementation of selective intrapartum chemoprophylaxis based on either a screening-based approach or a risk-based approach has led to a substantial decrease in the morbidity and mortality of GBS disease. Current 'gold-standard' detection methods for GBS are selective broth cultures of combined vaginal and anal specimens collected at 35-37 week's gestation. Rapid immunological detection methods, including latex agglutination test, enzyme immunoassay and optical immunoassay, as well as hybridization-based test, are available. These methods are useful in rapid identification of heavily colonized women, but are unable to detect light GBS colonization due to poor sensitivity. Recent development of real-time PCR and fluorescence labeling technologies has provided new detection platforms for bacterial identification. GBS-specific PCR assays using these new technologies offer promising tools for sensitive and specific detection of GBS directly from clinical specimens. The application of these assays in the current prevention strategy will simplify the prevention practice and rationalize antibiotic use.


Subject(s)
Chemistry, Clinical/methods , Molecular Diagnostic Techniques , Pregnancy Complications, Infectious/diagnosis , Streptococcal Infections/diagnosis , Streptococcus agalactiae/genetics , Cell Culture Techniques , Enzyme-Linked Immunosorbent Assay , Female , Humans , Infant, Newborn , Mass Screening/methods , Polymerase Chain Reaction/instrumentation , Polymerase Chain Reaction/methods , Pregnancy , Reverse Transcriptase Polymerase Chain Reaction , Streptococcal Infections/prevention & control
19.
J Bacteriol ; 182(24): 6913-20, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11092850

ABSTRACT

The elongation factor Tu, encoded by tuf genes, is a GTP binding protein that plays a central role in protein synthesis. One to three tuf genes per genome are present, depending on the bacterial species. Most low-G+C-content gram-positive bacteria carry only one tuf gene. We have designed degenerate PCR primers derived from consensus sequences of the tuf gene to amplify partial tuf sequences from 17 enterococcal species and other phylogenetically related species. The amplified DNA fragments were sequenced either by direct sequencing or by sequencing cloned inserts containing putative amplicons. Two different tuf genes (tufA and tufB) were found in 11 enterococcal species, including Enterococcus avium, Enterococcus casseliflavus, Enterococcus dispar, Enterococcus durans, Enterococcus faecium, Enterococcus gallinarum, Enterococcus hirae, Enterococcus malodoratus, Enterococcus mundtii, Enterococcus pseudoavium, and Enterococcus raffinosus. For the other six enterococcal species (Enterococcus cecorum, Enterococcus columbae, Enterococcus faecalis, Enterococcus sulfureus, Enterococcus saccharolyticus, and Enterococcus solitarius), only the tufA gene was present. Based on 16S rRNA gene sequence analysis, the 11 species having two tuf genes all have a common ancestor, while the six species having only one copy diverged from the enterococcal lineage before that common ancestor. The presence of one or two copies of the tuf gene in enterococci was confirmed by Southern hybridization. Phylogenetic analysis of tuf sequences demonstrated that the enterococcal tufA gene branches with the Bacillus, Listeria, and Staphylococcus genera, while the enterococcal tufB gene clusters with the genera Streptococcus and Lactococcus. Primary structure analysis showed that four amino acid residues encoded within the sequenced regions are conserved and unique to the enterococcal tufB genes and the tuf genes of streptococci and Lactococcus lactis. The data suggest that an ancestral streptococcus or a streptococcus-related species may have horizontally transferred a tuf gene to the common ancestor of the 11 enterococcal species which now carry two tuf genes.


Subject(s)
Enterococcus/genetics , Evolution, Molecular , Gene Transfer, Horizontal , Genes, Bacterial , Peptide Elongation Factor Tu/genetics , Amino Acid Sequence , Blotting, Southern , Enterococcus/metabolism , Gram-Positive Bacteria/genetics , Gram-Positive Bacteria/metabolism , Molecular Sequence Data , Peptide Elongation Factor Tu/chemistry , Peptide Elongation Factor Tu/metabolism , Phylogeny , Sequence Alignment , Sequence Analysis, DNA
20.
N Engl J Med ; 343(3): 175-9, 2000 Jul 20.
Article in English | MEDLINE | ID: mdl-10900276

ABSTRACT

BACKGROUND: Group B streptococcal infections are an important cause of neonatal morbidity and mortality. A rapid method for the detection of this organism in pregnant women at the time of delivery is needed to allow early treatment of neonates. METHODS: We studied the efficacy of two polymerase-chain-reaction (PCR) assays for routine screening of pregnant women for group B streptococci at the time of delivery. We obtained anal, vaginal, and combined vaginal and anal specimens from 112 pregnant women; in 57 women, specimens were obtained before and after the rupture of the amniotic membranes. The specimens were tested for group B streptococci by culture in a standard selective broth medium, with a conventional PCR assay, and with a new fluorogenic PCR assay. RESULTS: Among the 112 women, the results of the culture of the combined vaginal and anal specimens were positive for group B streptococci in 33 women (29.5 percent). The two PCR assays detected group B streptococcal colonization in specimens from 32 of these 33 women: the one negative PCR result was in a sample obtained after the rupture of membranes. As compared with the culture results, the sensitivity of both PCR assays was 97.0 percent and the negative predictive value was 98.8 percent. Both the specificity and the positive predictive value of the two PCR assays were 100 percent. The length of time required to obtain results was 30 to 45 minutes for the new PCR assay, 100 minutes for the conventional PCR assay, and at least 36 hours for culture. CONCLUSIONS: Colonization with group B streptococci can be identified rapidly and reliably by a PCR assay in pregnant women in labor both before and after the rupture of membranes.


Subject(s)
Polymerase Chain Reaction/methods , Pregnancy Complications, Infectious/diagnosis , Streptococcal Infections/diagnosis , Streptococcus agalactiae/isolation & purification , Anal Canal/microbiology , Bacteriological Techniques , Colony Count, Microbial , Extraembryonic Membranes , Female , Humans , Labor, Obstetric , Predictive Value of Tests , Pregnancy , Prospective Studies , Sensitivity and Specificity , Time Factors , Vagina/microbiology
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