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1.
Sci Rep ; 13(1): 10408, 2023 06 27.
Article in English | MEDLINE | ID: mdl-37369714

ABSTRACT

Understanding large carnivore demography on human-dominated lands is a priority to inform conservation strategies, yet few studies examine long-term trends. Jaguars (Panthera onca) are one such species whose population trends and survival rates remain unknown across working lands. We integrated nine years of camera trap data and tourist photos to estimate jaguar density, survival, abundance, and probability of tourist sightings on a working ranch and tourism destination in Colombia. We found that abundance increased from five individuals in 2014 to 28 in 2022, and density increased from 1.88 ± 0.87 per 100 km2 in 2014 to 3.80 ± 1.08 jaguars per 100 km2 in 2022. The probability of a tourist viewing a jaguar increased from 0% in 2014 to 40% in 2020 before the Covid-19 pandemic. Our results are the first robust estimates of jaguar survival and abundance on working lands. Our findings highlight the importance of productive lands for jaguar conservation and suggest that a tourism destination and working ranch can host an abundant population of jaguars when accompanied by conservation agreements and conflict interventions. Our analytical model that combines conventional data collection with tourist sightings can be applied to other species that are observed during tourism activities.Entender los patrones demográficos de los grandes carnívoros al interior de paisajes antrópicos es fundamental para el diseño de estrategias de conservación efectivas. En el Neotrópico, el jaguar (Panthera onca) es una de estas especies cuyas tendencias poblacionales y tasas de supervivencia en paisajes productivos son desconocidas. Para entender mejor estas dinámicas, integramos nueve años de fototrampeo junto a fotos de turistas para estimar la densidad, supervivencia, abundancia y probabilidad de avistamiento de esta especie en una finca ganadera y destino turístico en Colombia. Entre 2014 y 2022 encontramos que la abundancia incrementó de cinco a 28 individuos y la densidad de 1.88 ± 0.87 jaguares/ 100 km2 a 3.80 ± 1.08 jaguares/ 100 km2. La probabilidad de avistamiento por turistas aumentó de 0% en 2014 a 40% en 2020 antes de la pandemia del Covid-19. Nuestros resultados presentan las primeras estimaciones robustas de abundancia y supervivencia de este felino en paisajes antrópicos dónde el manejo de sistemas productivos combinados con turismo e intervenciones para la mitigación del conflicto puede albergar poblaciones abundantes de jaguares, demostrando su importancia para la conservación de esta especie. Nuestro modelo, al combinar datos convencionales con avistamientos, podría ser aplicado a otras especies observadas durante actividades turísticas.


Subject(s)
COVID-19 , Pandemics , Humans , Colombia , Tourism , COVID-19/epidemiology , Probability , Retrospective Studies
2.
Ecol Appl ; 33(1): e2726, 2023 01.
Article in English | MEDLINE | ID: mdl-36053865

ABSTRACT

We conducted a range-wide investigation of the dynamics of site-level reproductive rate of northern spotted owls using survey data from 11 study areas across the subspecies geographic range collected during 1993-2018. Our analytical approach accounted for imperfect detection of owl pairs and misclassification of successful reproduction (i.e., at least one young fledged) and contributed further insights into northern spotted owl population ecology and dynamics. Both nondetection and state misclassification were important, especially because factors affecting these sources of error also affected focal ecological parameters. Annual probabilities of site occupancy were greatest at sites with successful reproduction in the previous year and lowest for sites not occupied by a pair in the previous year. Site-specific occupancy transition probabilities declined over time and were negatively affected by barred owl presence. Overall, the site-specific probability of successful reproduction showed substantial year-to-year fluctuations and was similar for occupied sites that did or did not experience successful reproduction the previous year. Site-specific probabilities for successful reproduction were very small for sites that were unoccupied the previous year. Barred owl presence negatively affected the probability of successful reproduction by northern spotted owls in Washington and California, as predicted, but the effect in Oregon was mixed. The proportions of sites occupied by northern spotted owl pairs showed steep, near-monotonic declines over the study period, with all study areas showing the lowest observed levels of occupancy to date. If trends continue it is likely that northern spotted owls will become extirpated throughout large portions of their range in the coming decades.


Subject(s)
Strigiformes , Animals , Probability , Reproduction , Oregon , Washington
3.
Ecol Appl ; 32(6): e2628, 2022 09.
Article in English | MEDLINE | ID: mdl-35397481

ABSTRACT

Dispersal drives invasion dynamics of nonnative species and pathogens. Applying knowledge of dispersal to optimize the management of invasions can mean the difference between a failed and a successful control program and dramatically improve the return on investment of control efforts. A common approach to identifying optimal management solutions for invasions is to optimize dynamic spatial models that incorporate dispersal. Optimizing these spatial models can be very challenging because the interaction of time, space, and uncertainty rapidly amplifies the number of dimensions being considered. Addressing such problems requires advances in and the integration of techniques from multiple fields, including ecology, decision analysis, bioeconomics, natural resource management, and optimization. By synthesizing recent advances from these diverse fields, we provide a workflow for applying ecological theory to advance optimal management science and highlight priorities for optimizing the control of invasions. One of the striking gaps we identify is the extremely limited consideration of dispersal uncertainty in optimal management frameworks, even though dispersal estimates are highly uncertain and greatly influence invasion outcomes. In addition, optimization frameworks rarely consider multiple types of uncertainty (we describe five major types) and their interrelationships. Thus, feedbacks from management or other sources that could magnify uncertainty in dispersal are rarely considered. Incorporating uncertainty is crucial for improving transparency in decision risks and identifying optimal management strategies. We discuss gaps and solutions to the challenges of optimization using dynamic spatial models to increase the practical application of these important tools and improve the consistency and robustness of management recommendations for invasions.


Subject(s)
Introduced Species , Uncertainty
4.
Ecol Appl ; 32(3): e2544, 2022 04.
Article in English | MEDLINE | ID: mdl-35080801

ABSTRACT

In the United States, the Bald and Golden Eagle Protection Act prohibits take of golden eagles (Aquila chrysaetos) unless authorized by permit, and stipulates that all permitted take must be sustainable. Golden eagles are unintentionally killed in conjunction with many lawful activities (e.g., electrocution on power poles, collision with wind turbines). Managers who issue permits for incidental take of golden eagles must determine allowable take levels and manage permitted take accordingly. To aid managers in making these decisions in the western United States, we used an integrated population model to obtain estimates of golden eagle vital rates and population size, and then used those estimates in a prescribed take level (PTL) model to estimate the allowable take level. Estimated mean annual survival rates for golden eagles ranged from 0.70 (95% credible interval = 0.66-0.74) for first-year birds to 0.90 (0.88-0.91) for adults. Models suggested a high proportion of adult female golden eagles attempted to breed and breeding pairs fledged a mean of 0.53 (0.39-0.72) young annually. Population size in the coterminous western United States has averaged ~31,800 individuals for several decades, with λ = 1.0 (0.96-1.05). The PTL model estimated a median allowable take limit of ~2227 (708-4182) individuals annually given a management objective of maintaining a stable population. We estimate that take averaged 2572 out of 4373 (59%) deaths annually, based on a representative sample of transmitter-tagged golden eagles. For the subset of golden eagles that were recovered and a cause of death determined, anthropogenic mortality accounted for an average of 74% of deaths after their first year; leading forms of take over all age classes were shooting (~670 per year), collisions (~611), electrocutions (~506), and poisoning (~427). Although observed take overlapped the credible interval of our allowable take estimate and the population overall has been stable, our findings indicate that additional take, unless mitigated for, may not be sustainable. Our analysis demonstrates the utility of the joint application of integrated population and prescribed take level models to management of incidental take of a protected species.


Subject(s)
Eagles , Age Factors , Animals , Cause of Death , Female , Humans , Propylamines , Sulfides , Survival Rate , United States
6.
Ecol Evol ; 9(24): 13991-14004, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31938497

ABSTRACT

Many published studies in ecological science are viewed as stand-alone investigations that purport to provide new insights into how ecological systems behave based on single analyses. But it is rare for results of single studies to provide definitive results, as evidenced in current discussions of the "reproducibility crisis" in science. The key step in science is the comparison of hypothesis-based predictions with observations, where the predictions are typically generated by hypothesis-specific models. Repeating this step allows us to gain confidence in the predictive ability of a model, and its corresponding hypothesis, and thus to accumulate evidence and eventually knowledge. This accumulation may occur via an ad hoc approach, via meta-analyses, or via a more systematic approach based on the anticipated evolution of an information state. We argue the merits of this latter approach, provide an example, and discuss implications for designing sequences of studies focused on a particular question. We conclude by discussing current data collection programs that are preadapted to use this approach and argue that expanded use would increase the rate of learning in ecology, as well as our confidence in what is learned.

7.
Ecol Appl ; 28(5): 1325-1341, 2018 07.
Article in English | MEDLINE | ID: mdl-29696712

ABSTRACT

Conservation and management decision making in natural resources is challenging due to numerous uncertainties and unknowns, especially relating to understanding system dynamics. Adaptive resource management (ARM) is a formal process to making logical and transparent recurrent decisions when there are uncertainties about system dynamics. Despite wide recognition and calls for implementing adaptive natural resource management, applications remain limited. More common is a reactive approach to decision making, which ignores future system dynamics. This contrasts with ARM, which anticipates future dynamics of ecological process and management actions using a model-based framework. Practitioners may be reluctant to adopt ARM because of the dearth of comparative evaluations between ARM and more common approaches to making decisions. We compared the probability of meeting management objectives when managing a population under both types of decision frameworks, specifically in relation to typical uncertainties and unknowns. We use a population of Sandhill Cranes as our case study. We evaluate each decision process under varying levels of monitoring and ecological uncertainty, where the true underlying population dynamics followed a stochastic age-structured population model with environmentally driven vital rate density dependence. We found that the ARM framework outperformed the currently employed reactive decision framework to manage Sandhill Cranes in meeting the population objective across an array of scenarios. This was even the case when the candidate set of population models contained only naïve representations of the true population process. Under the reactive decision framework, we found little improvement in meeting the population objective even if monitoring uncertainty was eliminated. In contrast, if the population was monitored without error within the ARM framework, the population objective was always maintained, regardless of the population models considered. Contrary to expectation, we found that age-specific optimal harvest decisions are not always necessary to meet a population objective when population dynamics are age structured. Population managers can decrease risks and gain transparency and flexibility in management by adopting an ARM framework. If population monitoring data has high sampling variation and/or limited empirical knowledge is available for constructing mechanistic population models, ARM model sets should consider a range of mechanistic, descriptive, and predictive model types.


Subject(s)
Birds , Conservation of Natural Resources , Decision Making , Uncertainty , Animals , Models, Biological , Northwestern United States , Population Dynamics , Southwestern United States
8.
PLoS One ; 11(9): e0162690, 2016.
Article in English | MEDLINE | ID: mdl-27681854

ABSTRACT

While variation in age structure over time and space has long been considered important for population dynamics and conservation, reliable estimates of such spatio-temporal variation in age structure have been elusive for wild vertebrate populations. This limitation has arisen because of problems of imperfect detection, the potential for temporary emigration impacting assessments of age structure, and limited information on age. However, identifying patterns in age structure is important for making reliable predictions of both short- and long-term dynamics of populations of conservation concern. Using a multistate superpopulation estimator, we estimated region-specific abundance and age structure (the proportion of individuals within each age class) of a highly endangered population of snail kites for two separate regions in Florida over 17 years (1997-2013). We find that in the southern region of the snail kite-a region known to be critical for the long-term persistence of the species-the population has declined significantly since 1997, and during this time, it has increasingly become dominated by older snail kites (> 12 years old). In contrast, in the northern region-a region historically thought to serve primarily as drought refugia-the population has increased significantly since 2007 and age structure is more evenly distributed among age classes. Given that snail kites show senescence at approximately 13 years of age, where individuals suffer higher mortality rates and lower breeding rates, these results reveal an alarming trend for the southern region. Our work illustrates the importance of accounting for spatial structure when assessing changes in abundance and age distribution and the need for monitoring of age structure in imperiled species.

9.
Biometrics ; 72(1): 262-71, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26348116

ABSTRACT

We present a novel formulation of a mark-recapture-resight model that allows estimation of population size, stopover duration, and arrival and departure schedules at migration areas. Estimation is based on encounter histories of uniquely marked individuals and relative counts of marked and unmarked animals. We use a Bayesian analysis of a state-space formulation of the Jolly-Seber mark-recapture model, integrated with a binomial model for counts of unmarked animals, to derive estimates of population size and arrival and departure probabilities. We also provide a novel estimator for stopover duration that is derived from the latent state variable representing the interim between arrival and departure in the state-space model. We conduct a simulation study of field sampling protocols to understand the impact of superpopulation size, proportion marked, and number of animals sampled on bias and precision of estimates. Simulation results indicate that relative bias of estimates of the proportion of the population with marks was low for all sampling scenarios and never exceeded 2%. Our approach does not require enumeration of all unmarked animals detected or direct knowledge of the number of marked animals in the population at the time of the study. This provides flexibility and potential application in a variety of sampling situations (e.g., migratory birds, breeding seabirds, sea turtles, fish, pinnipeds, etc.). Application of the methods is demonstrated with data from a study of migratory sandpipers.


Subject(s)
Animal Migration/physiology , Bayes Theorem , Censuses , Models, Statistical , Population Density , Population Dynamics , Animals , Computer Simulation , Data Interpretation, Statistical , Reproducibility of Results , Sensitivity and Specificity
10.
J Anim Ecol ; 84(5): 1299-310, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25808951

ABSTRACT

1. Prediction is fundamental to scientific enquiry and application; however, ecologists tend to favour explanatory modelling. We discuss a predictive modelling framework to evaluate ecological hypotheses and to explore novel/unobserved environmental scenarios to assist conservation and management decision-makers. We apply this framework to develop an optimal predictive model for juvenile (<1 year old) sandhill crane Grus canadensis recruitment of the Rocky Mountain Population (RMP). We consider spatial climate predictors motivated by hypotheses of how drought across multiple time-scales and spring/summer weather affects recruitment. 2. Our predictive modelling framework focuses on developing a single model that includes all relevant predictor variables, regardless of collinearity. This model is then optimized for prediction by controlling model complexity using a data-driven approach that marginalizes or removes irrelevant predictors from the model. Specifically, we highlight two approaches of statistical regularization, Bayesian least absolute shrinkage and selection operator (LASSO) and ridge regression. 3. Our optimal predictive Bayesian LASSO and ridge regression models were similar and on average 37% superior in predictive accuracy to an explanatory modelling approach. Our predictive models confirmed a priori hypotheses that drought and cold summers negatively affect juvenile recruitment in the RMP. The effects of long-term drought can be alleviated by short-term wet spring-summer months; however, the alleviation of long-term drought has a much greater positive effect on juvenile recruitment. The number of freezing days and snowpack during the summer months can also negatively affect recruitment, while spring snowpack has a positive effect. 4. Breeding habitat, mediated through climate, is a limiting factor on population growth of sandhill cranes in the RMP, which could become more limiting with a changing climate (i.e. increased drought). These effects are likely not unique to cranes. The alteration of hydrological patterns and water levels by drought may impact many migratory, wetland nesting birds in the Rocky Mountains and beyond. 5. Generalizable predictive models (trained by out-of-sample fit and based on ecological hypotheses) are needed by conservation and management decision-makers. Statistical regularization improves predictions and provides a general framework for fitting models with a large number of predictors, even those with collinearity, to simultaneously identify an optimal predictive model while conducting rigorous Bayesian model selection. Our framework is important for understanding population dynamics under a changing climate and has direct applications for making harvest and habitat management decisions.


Subject(s)
Birds/physiology , Climate , Ecosystem , Animals , Bayes Theorem , Climate Change , Colorado , Models, Biological , Population Dynamics , Regression Analysis , Seasons
11.
Ecol Appl ; 24(5): 1155-66, 2014 Jul.
Article in English | MEDLINE | ID: mdl-25154103

ABSTRACT

Despite intensive monitoring, temporary emigration from the sampling area can induce bias severe enough for managers to discard survival parameter estimates toward the terminus of the times series (terminal bias). Under random temporary emigration, unbiased parameters can be estimated with CJS models. However, unmodeled Markovian temporary emigration causes bias in parameter estimates, and an unobservable state is required to model this type of emigration. The robust design is most flexible when modeling temporary emigration, and partial solutions to mitigate bias have been identified; nonetheless, there are conditions were terminal bias prevails. Long-lived species with high adult survival and highly variable nonrandom temporary emigration present terminal bias in survival estimates, despite being modeled with the robust design and suggested constraints. Because this bias is due to uncertainty about the fate of individuals that are undetected toward the end of the time series, solutions should involve using additional information on survival status or location of these individuals at that time. Using simulation, we evaluated the performance of models that jointly analyze robust design data and an additional source of ancillary data (predictive covariate on temporary emigration, telemetry, dead recovery, or auxiliary resightings) in reducing terminal bias in survival estimates. The auxiliary resighting and predictive covariate models reduced terminal bias the most. Additional telemetry data were effective at reducing terminal bias only when individuals were tracked for a minimum of two years. High adult survival of long-lived species made the joint model with recovery data ineffective at reducing terminal bias because of small-sample bias. The naive constraint model (last and penultimate temporary emigration parameters made equal), was the least efficient, although still able to reduce terminal bias when compared to an unconstrained model. Joint analysis of several sources of data improved parameter estimates and reduced terminal bias. Efforts to incorporate or acquire such data should be considered by researchers and wildlife managers, especially in the years leading up to status assessments of species of interest. Simulation modeling is a very cost-effective method to explore the potential impacts of using different sources of data to produce high-quality demographic data to inform management.


Subject(s)
Conservation of Natural Resources , Animals , Demography , Models, Theoretical , Population Dynamics
12.
Ecology ; 94(3): 610-7, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23687887

ABSTRACT

Occupancy statistical models that account for imperfect detection have proved very useful in several areas of ecology, including species distribution and spatial dynamics, disease ecology, and ecological responses to climate change. These models are based on the collection of multiple samples at each of a number of sites within a given season, during which it is assumed the species is either absent or present and available for detection while each sample is taken. However, for some species, individuals are only present or available for detection seasonally. We present a statistical model that relaxes the closure assumption within a season by permitting staggered entry and exit times for the species of interest at each site. Based on simulation, our open model eliminates bias in occupancy estimators and in some cases increases precision. The power to detect the violation of closure is high if detection probability is reasonably high. In addition to providing more robust estimation of occupancy, this model permits comparison of phenology across sites, species, or years, by modeling variation in arrival or departure probabilities. In a comparison of four species of amphibians in Maryland we found that two toad species arrived at breeding sites later in the season than a salamander and frog species, and departed from sites earlier.


Subject(s)
Anura/physiology , Models, Biological , Models, Statistical , Urodela/physiology , Animals , Anura/classification , Climate Change , Population Dynamics , Reproduction , Seasons , Species Specificity
13.
Ecology ; 93(4): 913-20, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22690641

ABSTRACT

Development and use of multistate mark-recapture models, which provide estimates of parameters of Markov processes in the face of imperfect detection, have become common over the last 20 years. Recently, estimating parameters of hidden Markov models, where the state of an individual can be uncertain even when it is detected, has received attention. Previous work has shown that ignoring state uncertainty biases estimates of survival and state transition probabilities, thereby reducing the power to detect effects. Efforts to adjust for state uncertainty have included special cases and a general framework for a single sample per period of interest. We provide a flexible framework for adjusting for state uncertainty in multistate models, while utilizing multiple sampling occasions per period of interest to increase precision and remove parameter redundancy. These models also produce direct estimates of state structure for each primary period, even for the case where there is just one sampling occasion. We apply our model to expected-value data, and to data from a study of Florida manatees, to provide examples of the improvement in precision due to secondary capture occasions. We have also implemented these models in program MARK. This general framework could also be used by practitioners to consider constrained models of particular interest, or to model the relationship between within-primary-period parameters (e.g., state structure) and between-primary-period parameters (e.g., state transition probabilities).


Subject(s)
Animal Identification Systems , Markov Chains , Models, Biological , Trichechus manatus/physiology , Animals , Ecosystem , Population Dynamics , Uncertainty
14.
Ecology ; 93(12): 2580-9, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23431589

ABSTRACT

Extreme weather events, such as droughts and heat waves, are expected to become more severe and more frequent in the coming years, and understanding their impacts on demographic rates is of increasing interest to both evolutionary ecologists and conservation practitioners. An individual's breeding probability can be a sensitive indicator of the decision to initiate reproductive behavior under varying environmental conditions, has strong fitness consequences, and can be considered the first step in a life history trade-off between allocating resources for breeding activities or self-survival. Using a 14-year time series spanning large variation in climatic conditions and the entirety of a population's breeding range, we estimated the effects of extreme weather conditions (drought) on the state-specific probabilities of breeding and survival of an endangered bird, the Florida Snail Kite (Rostrhamus sociabilis plumbeus). Our analysis accounted for uncertainty in breeding status assignment, a common source of uncertainty that is often ignored when states are based on field observations. Breeding probabilities in adult kites (> 1 year of age) decreased during droughts, whereas the probability of breeding in young kites (1 year of age) tended to increase. Individuals attempting to breed showed no evidence of reduced future survival. Although population viability analyses of this species and other species often implicitly assume that all adults will attempt to breed, we find that breeding probabilities were significantly < 1 for all 13 estimable years considered. Our results suggest that experience is an important factor determining whether or not individuals attempt to breed during harsh environmental conditions and that reproductive effort may be constrained by an individual's quality and/or despotic behavior among individuals attempting to breed.


Subject(s)
Endangered Species , Falconiformes/physiology , Reproduction/physiology , Sexual Behavior, Animal/physiology , Weather , Animals , Conservation of Natural Resources , Droughts , Models, Biological
15.
Ecology ; 91(6): 1598-604, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20583702

ABSTRACT

Multistate mark-recapture models with unobservable states can yield unbiased estimators of survival probabilities in the presence of temporary emigration (i.e., in cases where some individuals are temporarily unavailable for capture). In addition, these models permit the estimation of transition probabilities between states, which may themselves be of interest; for example, when only breeding animals are available for capture. However, parameter redundancy is frequently a problem in these models, yielding biased parameter estimates and influencing model selection. Using numerical methods, we examine complex multistate mark-recapture models involving two observable and two unobservable states. This model structure was motivated by two different biological systems: one involving island-nesting albatross, and another involving pond-breeding amphibians. We found that, while many models are theoretically identifiable given appropriate constraints, obtaining accurate and precise parameter estimates in practice can be difficult. Practitioners should consider ways to increase detection probabilities or adopt robust design sampling in order to improve the properties of estimates obtained from these models. We suggest that investigators interested in using these models explore both theoretical identifiability and possible near-singularity for likely parameter values using a combination of available methods.


Subject(s)
Ecosystem , Models, Biological , Animals , Bias , Demography , Models, Statistical , Research Design
16.
Ecol Lett ; 13(6): 659-74, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20426794

ABSTRACT

Analytical methods accounting for imperfect detection are often used to facilitate reliable inference in population and community ecology. We contend that similar approaches are needed in disease ecology because these complicated systems are inherently difficult to observe without error. For example, wildlife disease studies often designate individuals, populations, or spatial units to states (e.g., susceptible, infected, post-infected), but the uncertainty associated with these state assignments remains largely ignored or unaccounted for. We demonstrate how recent developments incorporating observation error through repeated sampling extend quite naturally to hierarchical spatial models of disease effects, prevalence, and dynamics in natural systems. A highly pathogenic strain of avian influenza virus in migratory waterfowl and a pathogenic fungus recently implicated in the global loss of amphibian biodiversity are used as motivating examples. Both show that relatively simple modifications to study designs can greatly improve our understanding of complex spatio-temporal disease dynamics by rigorously accounting for uncertainty at each level of the hierarchy.


Subject(s)
Animal Diseases/epidemiology , Animal Diseases/microbiology , Animals, Domestic/microbiology , Animals, Wild/microbiology , Ecology/statistics & numerical data , Models, Statistical , Uncertainty , Amphibians/microbiology , Amphibians/physiology , Animal Diseases/virology , Animal Migration , Animals , Animals, Domestic/physiology , Animals, Domestic/virology , Animals, Wild/physiology , Animals, Wild/virology , Anseriformes/virology , Fungi/pathogenicity , Humans , Influenza A virus/pathogenicity , Influenza in Birds/epidemiology , Influenza in Birds/virology , Mycoses/epidemiology , Mycoses/microbiology , Mycoses/veterinary
17.
Ecol Appl ; 19(5): 1079-90, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19688917

ABSTRACT

Thresholds and their relevance to conservation have become a major topic of discussion in the ecological literature. Unfortunately, in many cases the lack of a clear conceptual framework for thinking about thresholds may have led to confusion in attempts to apply the concept of thresholds to conservation decisions. Here, we advocate a framework for thinking about thresholds in terms of a structured decision making process. The purpose of this framework is to promote a logical and transparent process for making informed decisions for conservation. Specification of such a framework leads naturally to consideration of definitions and roles of different kinds of thresholds in the process. We distinguish among three categories of thresholds. Ecological thresholds are values of system state variables at which small changes bring about substantial changes in system dynamics. Utility thresholds are components of management objectives (determined by human values) and are values of state or performance variables at which small changes yield substantial changes in the value of the management outcome. Decision thresholds are values of system state variables at which small changes prompt changes in management actions in order to reach specified management objectives. The approach that we present focuses directly on the objectives of management, with an aim to providing decisions that are optimal with respect to those objectives. This approach clearly distinguishes the components of the decision process that are inherently subjective (management objectives, potential management actions) from those that are more objective (system models, estimates of system state). Optimization based on these components then leads to decision matrices specifying optimal actions to be taken at various values of system state variables. Values of state variables separating different actions in such matrices are viewed as decision thresholds. Utility thresholds are included in the objectives component, and ecological thresholds may be embedded in models projecting consequences of management actions. Decision thresholds are determined by the above-listed components of a structured decision process. These components may themselves vary over time, inducing variation in the decision thresholds inherited from them. These dynamic decision thresholds can then be determined using adaptive management. We provide numerical examples (that are based on patch occupancy models) of structured decision processes that include all three kinds of thresholds.


Subject(s)
Conservation of Natural Resources , Decision Making , Decision Support Techniques , Models, Theoretical
18.
Ecol Appl ; 19(1): 55-68, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19323173

ABSTRACT

For the purposes of making many informed conservation decisions, the main goal for data collection is to assess population status and allow prediction of the consequences of candidate management actions. Reducing the bias and variance of estimates of population parameters reduces uncertainty in population status and projections, thereby reducing the overall uncertainty under which a population manager must make a decision. In capture-recapture studies, imperfect detection of individuals, unobservable life-history states, local movement outside study areas, and tag loss can cause bias or precision problems with estimates of population parameters. Furthermore, excessive disturbance to individuals during capture-recapture sampling may be of concern because disturbance may have demographic consequences. We address these problems using as an example a monitoring program for Black-footed Albatross (Phoebastria nigripes) and Laysan Albatross (Phoebastria immutabilis) nesting populations in the northwestern Hawaiian Islands. To mitigate these estimation problems, we describe a synergistic combination of sampling design and modeling approaches. Solutions include multiple capture periods per season and multistate, robust design statistical models, dead recoveries and incidental observations, telemetry and data loggers, buffer areas around study plots to neutralize the effect of local movements outside study plots, and double banding and statistical models that account for band loss. We also present a variation on the robust capture-recapture design and a corresponding statistical model that minimizes disturbance to individuals. For the albatross case study, this less invasive robust design was more time efficient and, when used in combination with a traditional robust design, reduced the standard error of detection probability by 14% with only two hours of additional effort in the field. These field techniques and associated modeling approaches are applicable to studies of most taxa being marked and in some cases have individually been applied to studies of birds, fish, herpetofauna, and mammals.


Subject(s)
Charadriiformes/physiology , Ecosystem , Research Design , Animals , Models, Biological , Models, Statistical , Population Dynamics , Sample Size
19.
Ecology ; 88(4): 891-903, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17536706

ABSTRACT

Simultaneous estimation of survival, reproduction, and movement is essential to understanding how species maximize lifetime reproduction in environments that vary across space and time. We conducted a four-year, capture-recapture study of three populations of eastern tiger salamanders (Ambystoma tigrinum tigrinum) and used multistate mark-recapture statistical methods to estimate the manner in which movement, survival, and breeding probabilities vary under different environmental conditions across years and among populations and habitats. We inferred how individuals may mitigate risks of mortality and reproductive failure by deferring breeding or by moving among populations. Movement probabilities among populations were extremely low despite high spatiotemporal variation in reproductive success and survival, suggesting possible costs to movements among breeding ponds. Breeding probabilities varied between wet and dry years and according to whether or not breeding was attempted in the previous year. Estimates of survival in the nonbreeding, forest habitat varied among populations but were consistent across time. Survival in breeding ponds was generally high in years with average or high precipitation, except for males in an especially ephemeral pond. A drought year incurred severe survival costs in all ponds to animals that attempted breeding. Female salamanders appear to defer these episodic survival costs of breeding by choosing not to breed in years when the risk of adult mortality is high. Using stochastic simulations of survival and breeding under historical climate conditions, we found that an interaction between breeding probabilities and mortality limits the probability of multiple breeding attempts differently between the sexes and among populations.


Subject(s)
Ambystoma/physiology , Breeding/methods , Environment , Reproduction/physiology , Animals , Female , Male , Mortality , Probability , Rain , Stochastic Processes , Survival , Time Factors
20.
Ecology ; 87(1): 169-77, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16634308

ABSTRACT

Matrix population models that allow an animal to occupy more than one state over time are important tools for population and evolutionary ecologists. Definition of state can vary, including location for metapopulation models and breeding state for life history models. For populations whose members can be marked and subsequently reencountered, multistate mark-recapture models are available to estimate the survival and transition probabilities needed to construct population models. Multistate models have proved extremely useful in this context, but they often require a substantial amount of data and restrict estimation of transition probabilities to those areas or states subjected to formal sampling effort. At the same time, for many species, there are considerable tag recovery data provided by the public that could be modeled in order to increase precision and to extend inference to a greater number of areas or states. Here we present a statistical model for combining multistate capture-recapture data (e.g., from a breeding ground study) with multistate tag recovery data (e.g., from wintering grounds). We use this method to analyze data from a study of Canada Geese (Branta canadensis) in the Atlantic Flyway of North America. Our analysis produced marginal improvement in precision, due to relatively few recoveries, but we demonstrate how precision could be further improved with increases in the probability that a retrieved tag is reported.


Subject(s)
Demography , Ecology/methods , Geese/physiology , Models, Biological , Animal Migration , Animals , Reproduction , Seasons
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