N-terminal derivatization and fragmentation of neutral peptides via ion--molecule reactions with acylium ions: toward gas-phase Edman degradation?

The gas-phase ion-molecule reactions of neutral alanylglycine have been examined with various mass-selected acylium ions RCO(+) (R= CH(3), CD(3), C(6)H(5), C(6)F(5) and (CH(3))( 2)N), as well as the transacylation reagent O-benzoylbenzophenone in a Fourier transform ion cyclotron resonance mass spectrometer. Reactions of the gaseous dipeptide with acylium ions trapped in the ICR cell result in the formation of energized [M + RCO](+) adduct ions that fragment to yield N-terminal b-type and C-terminal y-type product ions, including a modified b(1) ion which is typically not observed in the fragmentation of protonated peptides. Judicious choice of the acylium ion employed allows some control over the product ion types that are observed (i.e., b versus y ions). The product ion distributions from these ion--molecule reactions are similar to those obtained by collision-activated dissociation in a triple quadrupole mass spectrometer of the authentic N-acylated alanylglycine derivatives. These data indicate that derivatization of the peptide in the gas-phase occurs at the N-terminal amine. Ab initio molecular orbital calculations, performed to estimate the thermochemistry of the steps associated with adduct formation as well as product ion formation, indicate that (i) the initially formed adduct is energized and hence likely to rapidly undergo fragmentation, and (ii) the likelihood for the formation of modified b(1) ions in preference to y(1) ions is dependent on the R substituent of the acylium ion. The reaction of the tetrapeptide valine--alanine--alanine--phenylalanine with the benzoyl cation was also found to yield a number of product ions, including a modified b(1) ion. This result suggests that the new experimental approach described here may provide a tool to address one of the major limitations associated with traditional mass spectrometric peptide sequencing approaches, that is, determination of the identity and order of the two N-terminal amino acids. Analogies are made between the reactions observed here and the derivatization and N-terminal cleavage reactions employed in the condensed-phase Edman degradation method.

A Fourier-transform ion cyclotron resonance study of the 3,5-didehydrophenyl cation.

The 3,5-didehydrophenyl cation has been generated in good purity via sustained off-resonance irradiation for collision-activated dissociation of 3,5-dinitrobenzoyl chloride in a Fourier-transform ion cyclotron resonance mass spectrometer. Differences in the ion-molecule reactivity of this species from that of its cyclic and acyclic isomers allowed isomeric distinction to be achieved. This study represents the first definitive identification of this fundamentally interesting, doubly aromatic ion. However, the formation of the 3,5-didehydrophenyl cation was found to be the exception rather than the rule, with most 1,3,5-substituted benzenes yielding mainly acyclic C6H3+ isomers under electron ionization conditions. This mixed ion population was attributed to isomerization of fragmentation intermediates rather than any intrinsic instability of the 3,5-didehydrophenyl cation.

Polarity of the transition state controls the reactivity of related charged phenyl radicals toward atom and group donors.

Polar effects are demonstrated to be a key factor in controlling the reactivities of related charged phenyl radicals in different exothermic atom and group abstraction reactions in the gas phase. The effects of various meta substituents on the phenyl radicals' reactivity were probed via the measurement of bimolecular reaction rate constants by using Fourier transform ion cyclotron resonance mass spectrometry. This approach requires an additional, charged substituent to be present in the phenyl radical to allow mass spectrometric manipulation. The m-pyridinium group was chosen for this purpose. The substrates studied were allyl iodide, dimethyl disulfide, and tert-butyl isocyanide. Two of the reactions of interest, *I and *SCH(3) transfer, are thought to occur by concerted bimolecular homolytic substitution (S(H)2), and the third one, *CN transfer, by an addition/elimination mechanism. For all three substrates, the reaction rate was found to increase in the following order for the differently substituted phenyl radicals: CH(3) approximately H < Br approximately Cl approximately COOH < NO(2) approximately CN. This trend does not arise from differences in reaction exothermicities or bond dissociation energies but via lowering the reaction barrier by electronic effects. The stabilization of the transition state is attributed to its increased polar character. A semiquantitative measure of the barrier lowering effect for each substituent is obtained from its influence on the electron affinity of the charged radical, as the calculated (B3LYP/6-31+G(d)) adiabatic electron affinities of the radical model systems (ammonium instead of pyridinium charge site) follow the same trend as the reactivities.

Laser desorption in transmission geometry inside a Fourier-transform ion cyclotron resonance mass spectrometer.

We report here the first application of laser desorption (LD) in transmission geometry (backside irradiation of the sample through a transparent support) inside a Fourier-transform ion cyclotron resonance mass spectrometer (FT-ICR). A probe-mounted fiber optic assembly was used to simplify the implementation of this LD technique. This setup requires little or no instrument modifications, has minimum maintenance requirements, and is relatively inexpensive to build. The performance of the probe was tested by determining the molecular weight of a commercial polystyrene standard from its matrix-assisted laser desorption/ionization (MALDI) spectrum. The measured average molecular weight is comparable to that obtained for the same sample by MALDI in the conventional top-illumination arrangement (reflection geometry) and by the manufacturer of the sample by gel permeation chromatography. The average velocities measured for ions evaporated by transmission mode LD of several neat samples are about half the velocity of those obtained by using the reflection geometry. Therefore, transmission mode irradiation of the sample holds promise to desorb ions that are easier to trap in an ICR cell. An oscillating capillary nebulizer was adapted for the deposition of analytes to improve sampling reproducibility.

Determination of 3,3'-dichlorobenzidine and its degradation products in environmental samples with a small low-field Fourier transform ion cyclotron resonance mass spectrometer.

3,3'-Dichlorobenzidine (DCB) and its degradation products, 3-chlorobenzidine (MCB) and benzidine, are of environmental concern because of their carcinogenic nature. The suitability of a small Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer for the analysis of these environmental contaminants in different types of matrices was explored. All the measurements were carried out by depositing the sample solution directly on a disk that was introduced into the mass spectrometer. This approach is very fast and simple because it requires no prior chromatographic separation or derivatization. Calibration curves determined by collecting 70-eV electron ionization mass spectra of neat samples yielded lower limits of detection of 29 and 17 pg (total amount on the solids probe) for DCB and benzidine, respectively (based on a signal to noise ratio of > or = 2:1), while chemical ionization with ammonia resulted in lower limits of detection of 21 pg for DCB and 9 pg for benzidine (total amount on the solids probe). FT-ICR analysis of sediments collected from Lake Macatawa (Holland, MI) verified the presence of DCB in this complex, environmentally significant sample matrix. Laboratory experiments designed to probe biodegradation and photodegradation pathways showed that DCB undergoes sequential dehalogenation to yield MCB and then benzidine under exposure to microorganisms and under simulated tropospheric solar radiation. The ability of the FT-ICR to determine elemental compositions of compounds introduced as described above was demonstrated for one of the degradation products.

Reactivity of Cl-P(+)-Cl toward cyclic organic ethers.

The dichlorophosphenium ion (Cl-P(+)-Cl) undergoes a variety of reactions with cyclic organic ethers in the gas phase in a Fourier-transform ion cyclotron resonance mass spectrometer. Most of the reactions are initiated by Cl-P(+)-Cl-induced heterolytic C-O bond cleavage. However, the observed final products depend on the exact structure of the ether. For saturated ethers, e.g., tetrahydropyran, tetrahydrofuran, and 2-methyltetrahydrofuran, the most abundant ionic product corresponds to hydroxide abstraction by Cl-P(+)-Cl. This unexpected reaction is rationalized by a multistep mechanism that involves an initial heterolytic C-O bond cleavage accompanied by a 1,2-hydride shift, and that ultimately yields a resonance-stabilized allyl cation and HOPCl2. The process is estimated to be highly exothermic (AM1 calculations yield delta H = -(33-38) kcal mol(-1) for the ethers mentioned above). However, the adducts formed from most of the unsaturated ethers are unable to undergo hydride shifts and hence cannot react via this pathway. In some of these cases, e.g., for 2,5-dihydrofuran and 2,5-dihydro-3,4-benzofuran, the C-O bond heterolysis is followed by oxygen/chlorine exchange to yield the O=PCl radical and a resonance-stabilized carbocation (AM1 calculations yield delta H = -14 kcal mol(-1) for the reaction of 2,5-dihydro-3,4-benzofuran). Hydride abstraction by Cl-P(+)-Cl also yields an abundant product for these two ethers. On the other hand, the ethers with low ionization energies, such as 2,3-dihydrofuran and 2,3-dihydrobenzofuran, react with Cl-P(+)-Cl by electron transfer. Finally, a unique pathway, addition followed by elimination of HCl, dominates the reaction with furan. The observed reactions are rationalized by thermochemical data obtained from semiempirical molecular orbital calculations.

Synthesis of charged phenyl radicals and biradicals by laser photolysis in a Fourier-transform ion cyclotron resonance mass spectrometer.

The feasibility of generating substituted phenyl radicals and biradicals (with a charged substituent) in the gas phase by laser photolysis was examined by using a Fourier-transform ion cyclotron resonance mass spectrometer. The precursors were generated by ipso-substitution of a halogen atom in the radical cation of a di- or trihalobenzene by various nucleophiles. Photolytic cleavage of the remaining carbon-halogen bond(s) with 266-nm radiation was found to produce many substituted phenyl radicals in greater yields than the earlier employed method, sustained off-resonance irradiated collision-activated dissociation (SORI-CAD). Furthermore, ion generation by photolysis leads to isomerization less often than collisional activation. Finally, not only phenyl-bromine and phenyl-iodine but also certain phenyl-chlorine bonds can be cleaved by photolysis, whereas the synthetic utility of SORI-CAD appears to be largely limited to the cleavage of phenyl-iodine bonds. Hence, laser photolysis greatly expands the variety of substituted phenyl radicals and biradicals that can be synthesized inside a mass spectrometer.

Characterization of long-chain carboxylic esters with CH3OBOCH 3 (+) in a small fourier-transform ion cyclotron resonance mass spectrometer.

The usefulness of CH3OBOCH 3 (+) as a chemical ionization reagent was examined by allowing the ion to react with carboxylic esters of various chain lengths in a small Fourier-transform ion cyclotron resonance mass spectrometer equipped with a permanent magnet. CH3OBOCH 3 (+) is a strong electrophile and readily abstracts an oxygen-containing group from the carboxylic esters. Long-chain esters exclusively lose the alkoxide moiety to give the acylium ion. The same reaction was observed for saturated, unsaturated, branched and cyclic esters. In each case, the acylium ion reacts further with a neutral ester molecule by proton transfer to yield the protonated ester as a secondary product. This remarkably simple product distribution reveals the molecular weight of the ester, the chain length of its acid moiety, and the degree of unsaturation in the acid and alcohol moieties.

Distinguishing conventional and distonic radical cations by using dimethyl diselenide.

Dimethyl diselenide is demonstrated to be among the most powerful reagents used to identify distonic radical cations. Most such ions readily abstract CH3Se from dimethyl diselenide. The reaction is faster and more exclusive than CH3S(·) abstraction from dimethyl disulfide, a reaction used successfully in the past to identify numerous distonic ions. Very acidic distonic ions, such as HC(+)(OH)OCH 2 (·) , do not undergo CH3Se(·) abstraction, but instead protonate dimethyl diselenide. In sharp contrast to the reactivity of distonic ions, most conventional radical cations were found either to react by exclusive electron transfer or to be unreactive toward dimethyl diselenide. Hence, this reagent allows distinction of distonic and conventional isomers, which was demonstrated directly by examining two such isomer pairs. To be able to predict whether electron transfer is exothermic (and hence likely to occur), the ionization energy of dimethyl diselenide was determined by bracketing experiments. The low value obtained (7.9±0.1 eV) indicates that dimethyl diselenide will react with many conventional carbon-, sulfur-, and oxygen-containing radical cations by electron transfer. Nitrogen-containing conventional radical cations were found either to react with dimethyl diselenide by electron transfer or to be unreactive.

Methyl propionate radical cation.

Examination of the reactions of the long-lived (>0.5-s) radical cations of CD3CH2COOCH3 and CH3CH2COOCD3 indicates that the long-lived, nondecomposing methyl propionate radical cation CH3CH2C(O)OCH 3 (+·) isomerizes to its enol form CH3CH=C(OH)OCH 3 (+·) (ΔH isomerization ≃ -32 kcal/mol) via two different pathways in the gas phase in a Fourier-transform ion cyclotron resonance mass spectrometer. A 1,4-shift of a ß-hydrogen of the acid moiety to the carbonyl oxygen yields the distonic ion (·)CH2CH2C(+) (OH)OCH3 that then rearranges to CH3CH=C(OH)OCH 3 (+·) probably by consecutive 1,5- and 1,4-hydrogen shifts. This process is in competition with a 1,4-hydrogen transfer from the alcohol moiety to form another distonic ion, CH3CH2C(+)(OH)OCH 2 (·) , that can undergo a 1,4-hydrogen shift to form CH3CH=C(OH)OCH 3 (+·) . Ab initio molecular orbital calculations carried out at the UMP2/6-31G** + ZPVE level of theory show that the two distonic ions lie more than 16 kcal/mol lower in energy than CH3CH2C(O)OCH 3 (+·) . Hence, the first step of both rearrangement processes has a great driving force. The 1,4-hydrogen shift that involves the acid moiety is 3 kcal/mol more exothermic (ΔH isomerization=-16 kcal/mol) and is associated with a 4-kcal/mol lower barrier (10 kcal/mol) than the shift that involves the alcohol moiety. Indeed, experimental findings suggest that the hydrogen shift from the acid moiety is likely to be the favored channel.

Multiple-stage mass spectrometry in structural characterization of organophosphorus compounds.

Multiple-stage mass spectrometry involving consecutive collision-activated dissociation reactions was used to examine the structures of fragment ions commonly formed on electron ionization of organophosphorus esters. The compounds studied include several aryl thiophosphates, some of which are analogs of common pesticides. Energy-resolved collisionactivated dissociation experiments allow the dissociation of the molecular ions of these compounds in such a manner that only a few fragment ions dominate the spectrum. An abundant fragment ion of m/z 109, formed from all of the compounds studied, can have at least four different stable structures: (CH3O)2PO(+), CH3CH2OP(O)OH(+), CH2 =CHOP(H)(OH)2 (+), and (CH2O)2P(H)OH(+). The structure of the fragment ion of m/z 109 was found to reflect the phosphorus-containing part of the compounds studied. Another abundant fragment ion obtained for all the aryl esters studied is structurally characteristic of the aromatic moiety of the molecule. This fragment ion is the result of a complex rearrangement involving transfer of an alkylene group to the aromatic ring from the phosphoruscontaining part of the molecular ion. The utility of these fragment ions in the structural characterization of unknown organophosphorus esters is discussed.

Information on the location of carbon-carbon double bonds in C6-C 23 linear alkenes from carbon addition reactions in a quadrupole ion trap equipped with a pulsed sample-inlet system.

Ion-molecule reactions of a number of alkene molecular ions with different neutral alkenes were studied in a quadrupole ion trap equipped with a pulsed sample-inlet system. The molecules studied include several isomeric unbranched hexenes, heptenes, octenes, and nonenes, as well as representative alkenes with ten, twelve, fourteen, and twenty-three carbon atoms. Transfer of structurally characteristic number of methylene units between the ionic and neutral reactants dominates the product distributions for all the alkenes studied, with the exception of 1-alkenes. Isomeric alkenes can be readily distinguished on the basis of their products from reactions with neutral alkenes. It is suggested that distonic intermediates are generated in these reactions, and that they fragment by alkene elimination after 1,2- and 1,5-hydride shifts. The ability to vary the reaction time, pressure of the neutral reagents, and the type of ions and neutral molecules present in the reaction chamber during each stage of the experiment sequence makes it possible to maximize the amount of structural information obtained for alkenes in these experiments. Use of CS 2 (+•) to generate the alkene molecular ion by charge exchange yields the same information without the need to carry out a mass-selection step for the ionized alkene.

Pulsed gas introduction into quadrupole ion traps.

Two different Paul-type quadrupole ion traps were equipped with pulsed-valve gas inlets. The duration of a gas pulse inside the trap is variable, and pulses as short as 50 ms (FWHH) have been measured, allowing the use of several gas pulses during one experiment. The benefits of pulsed valves are outlined and demonstrated for chemical ionization experiments and for the use of selective ion-molecule reactions in structure determination of ions and neutral molecules.