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1.
bioRxiv ; 2023 Mar 16.
Article in English | MEDLINE | ID: mdl-36993753

ABSTRACT

Chemical modification of RNAs is important for post-transcriptional gene regulation. The METTL3-METTL14 complex generates most N 6 -methyladenosine (m 6 A) modifications in mRNAs, and dysregulated methyltransferase expression has been linked to numerous cancers. Here we show that changes in m 6 A modification location can impact oncogenesis. A gain-of-function missense mutation found in cancer patients, METTL14 R298P , promotes malignant cell growth in culture and in transgenic mice. The mutant methyltransferase preferentially modifies noncanonical sites containing a GGAU motif and transforms gene expression without increasing global m 6 A levels in mRNAs. The altered substrate specificity is intrinsic to METTL3-METTL14, helping us to propose a structural model for how the METTL3-METTL14 complex selects the cognate RNA sequences for modification. Together, our work highlights that sequence-specific m 6 A deposition is important for proper function of the modification and that noncanonical methylation events can impact aberrant gene expression and oncogenesis.

2.
Nucleic Acids Res ; 47(16): 8708-8719, 2019 09 19.
Article in English | MEDLINE | ID: mdl-31392993

ABSTRACT

Long Interspersed Elements (LINEs), also known as non-LTR retrotransposons, encode a multifunctional protein that reverse transcribes its mRNA into DNA at the site of insertion by target primed reverse transcription. The second half of the integration reaction remains very poorly understood. Second-strand DNA cleavage and second-strand DNA synthesis were investigated in vitro using purified components from a site-specific restriction-like endonuclease (RLE) bearing LINE. DNA structure was shown to be a critical component of second-strand DNA cleavage. A hitherto unknown and unexplored integration intermediate, an open '4-way' DNA junction, was recognized by the element protein and cleaved in a Holliday junction resolvase-like reaction. Cleavage of the 4-way junction resulted in a natural primer-template pairing used for second-strand DNA synthesis. A new model for RLE LINE integration is presented.


Subject(s)
DNA Restriction Enzymes/genetics , DNA, Cruciform/genetics , Long Interspersed Nucleotide Elements , RNA, Messenger/genetics , RNA-Directed DNA Polymerase/genetics , Reverse Transcription , Animals , Bombyx/genetics , Bombyx/metabolism , DNA/chemistry , DNA/genetics , DNA/metabolism , DNA Cleavage , DNA Primers/genetics , DNA Primers/metabolism , DNA Restriction Enzymes/metabolism , DNA, Cruciform/chemistry , DNA, Cruciform/metabolism , Holliday Junction Resolvases/genetics , Holliday Junction Resolvases/metabolism , Nucleic Acid Conformation , RNA, Messenger/metabolism , RNA-Directed DNA Polymerase/metabolism
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