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1.
Ecol Evol ; 14(7): e11623, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38957695

ABSTRACT

The colours of insects function in intraspecific communication such as sexual signalling, interspecific communication such as protection from predators, and in physiological processes, such as thermoregulation. The expression of melanin-based colours is temperature-dependent and thus likely to be impacted by a changing climate. However, it is unclear how climate change drives changes in body and wing colour may impact insect physiology and their interactions with conspecifics (e.g. mates) or heterospecific (e.g. predators or prey). The aim of this review is to synthesise the current knowledge of the consequences of climate-driven colour change on insects. Here, we discuss the environmental factors that affect insect colours, and then we outline the adaptive mechanisms in terms of phenotypic plasticity and microevolutionary response. Throughout we discuss the impact of climate-related colour change on insect physiology, and interactions with con-and-heterospecifics.

2.
J Evol Biol ; 2024 Jun 06.
Article in English | MEDLINE | ID: mdl-38843076

ABSTRACT

Statistical analysis and data visualisation are integral parts of science communication. One of the major issues in current data analysis practice is an over-dependency on - and misuse of - p-values. Researchers have been advocating for the estimation and reporting of effect sizes for quantitative research to enhance the clarity and effectiveness of data analysis. Reporting effect sizes in scientific publications has until now been mainly limited to numeric tables, even though effect size plotting is a more effective means of communicating results. We have developed the Durga R package for estimating and plotting effect sizes for paired and unpaired group comparisons. Durga allows users to estimate unstandardised and standardised effect sizes and bootstrapped confidence intervals of the effect sizes. The central functionality of Durga is to combine effect size visualisations with traditional plotting methods. Durga is a powerful statistical and data visualisation package that is easy to use, providing the flexibility to estimate effect sizes of paired and unpaired data using different statistical methods. Durga provides a plethora of options for plotting effect size, which allows users to plot data in the most informative and aesthetic way. Here, we introduce the package and its various functions. We further describe a workflow for estimating and plotting effect sizes using example data sets.

3.
Ecol Evol ; 14(2): e10897, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38304265

ABSTRACT

Host-parasite interactions are impacted by climate, which may result in variation of parasitism across landscapes and time. Understanding how parasitism varies across these spatio-temporal scales is crucial to predicting how organisms will respond to and cope under a rapidly changing climate. Empirical work on how parasitism varies across climates is limited. Here, we examine the variation of parasitism across seasons and identify the likely climatic factors that explain this variation using Agriocnemis femina damselflies and Arrenurus water mite ectoparasites as a host-parasite study system. We assessed parasitism in a natural population in Sylhet, Bangladesh which is located in subtropical climate between 2021 and 2023. We calculated prevalence (proportion of infected individuals) and intensity (the number of parasites on an infected individual) of parasitism across different seasons. Parasite prevalence and intensity were greater during cooler seasons (autumn and winter) compared to hotter seasons (spring and summer). Mean temperature and precipitation were negatively correlated with parasite prevalence, whereas only mean precipitation was negatively correlated with parasite intensity. Tropical, subtropical and mediterranean regions are predicted to experience extreme climatic events (extreme temperature, less precipitation and frequent drought) as a consequence of anthropogenic climate change, and our finding suggests that this might alter patterns of parasitism in aquatic insects.

4.
Proc Biol Sci ; 290(2009): 20232035, 2023 10 25.
Article in English | MEDLINE | ID: mdl-37876190

ABSTRACT

Many animals use self-built structures (extended phenotypes) to enhance body functions, such as thermoregulation, prey capture or defence. Yet, it is unclear whether the evolution of animal constructions supplements or substitutes body functions-with disparate feedbacks on trait evolution. Here, using brown spiders (Araneae: marronoid clade), we explored if the evolutionary loss and gain of silken webs as extended prey capture devices correlates with alterations in traits known to play an important role in predatory strikes-locomotor performance (sprint speed) and leg spination (expression of capture spines on front legs). We found that in this group high locomotor performance, with running speeds of over 100 body lengths per second, evolved repeatedly-both in web-building and cursorial spiders. There was no correlation with running speed, and leg spination only poorly correlated, relative to the use of extended phenotypes, indicating that web use does not reduce selective pressures on body functions involved in prey capture and defence per se. Consequently, extended prey capture devices serve as supplements rather than substitutions to body traits and may only be beneficial in conjunction with certain life-history traits, possibly explaining the rare evolution and repeated loss of trapping strategies in predatory animals.


Subject(s)
Running , Spiders , Animals , Spiders/physiology , Predatory Behavior/physiology , Silk
5.
Heliyon ; 8(8): e10290, 2022 Aug.
Article in English | MEDLINE | ID: mdl-36046541

ABSTRACT

Lepidoptera, butterflies and moths, are significant pollinators and ecosystem health indicators. Therefore, monitoring their diversity, distribution, and extinction risks are of critical importance. We aim to understand drivers of local extinction risks of the butterflies in Bangladesh. We conducted a systematic review to extract local extinction risks of the butterflies of Bangladesh, and possible drivers (e.g., body size and diet breadth) of their extinction. We tested whether body size, larval host plants and adult nectar plants contribute to the local extinction risks of butterflies. We predicted butterflies with larger body size and fewer host and nectar plants would be in greater extinction risk. We showed extinction risk is higher in larger butterflies than smaller butterflies, and in butterflies with fewer number of host and nectar plants than the butterflies with higher number host and nectar plants. Our study identifies body size and diet breadth as a potential driver of the local extinction of butterflies thereby suggesting larger conservation urgency for the larger butterflies with narrow diet breadth.

6.
PLoS One ; 17(7): e0261540, 2022.
Article in English | MEDLINE | ID: mdl-35802642

ABSTRACT

The prevalence and intensity of parasitism can have different fitness costs between sexes, and across species and developmental stages. This variation could arise because of species specific sexual and developmental differences in body condition, immunity, and resistance. Theory predicts that the prevalence of parasitism will be greater in individuals with poor body condition and the intensity of parasitism will be greater in individuals with larger body size. These predictions have been tested and verified in vertebrates. In insects, however, contradictory evidence has been found in different taxa. Here, we tested these predictions on two species of Agriocnemis (Agriocnemis femina and Agriocnemis pygmaea) damselflies, which are parasitized by Arrenurus water mite ectoparasites. We measured body weight, total body length, abdomen area and thorax area of non-parasitized damselflies and found body condition varied between males and females, between immature females and mature females and between A. femina and A. pygmaea. Then, we calculated the parasite prevalence, i.e., the absence or presence of parasites and intensity, i.e., the number of parasites per infected damselfly in eleven natural populations of both species. In line to our predictions, we observed greater prevalence in immature females than mature females but found no difference in parasite prevalence between males and females. Furthermore, we found that parasite intensity was higher in females than males and in immature females than mature females. Our result also showed that the frequency and intensity of parasitism varied between the two studied species, being higher in A. pygmaea than A. femina. Our study provides evidence that parasitism impacts sexes, developmental stages and species differentially and suggests that variation may occur due to sex, developmental stage, and species-specific resistance and tolerance mechanism.


Subject(s)
Mites , Odonata , Animals , Body Size , Female , Host-Parasite Interactions , Humans , Insecta/parasitology , Male
7.
Sci Data ; 9(1): 265, 2022 06 02.
Article in English | MEDLINE | ID: mdl-35654905

ABSTRACT

Trait databases have become important resources for large-scale comparative studies in ecology and evolution. Here we introduce the AnimalTraits database, a curated database of body mass, metabolic rate and brain size, in standardised units, for terrestrial animals. The database has broad taxonomic breadth, including tetrapods, arthropods, molluscs and annelids from almost 2000 species and 1000 genera. All data recorded in the database are sourced from their original empirical publication, and the original metrics and measurements are included with each record. This allows for subsequent data transformations as required. We have included rich metadata to allow users to filter the dataset. The additional R scripts we provide will assist researchers with aggregating standardised observations into species-level trait values. Our goals are to provide this resource without restrictions, to keep the AnimalTraits database current, and to grow the number of relevant traits in the future.


Subject(s)
Basal Metabolism , Body Weight , Brain , Databases, Factual , Animals , Ecology , Organ Size , Phenotype
8.
Nutrients ; 13(6)2021 May 24.
Article in English | MEDLINE | ID: mdl-34073784

ABSTRACT

Mounting evidence support the potential benefits of functional foods or nutraceuticals for human health and diseases. Black cumin (Nigella sativa L.), a highly valued nutraceutical herb with a wide array of health benefits, has attracted growing interest from health-conscious individuals, the scientific community, and pharmaceutical industries. The pleiotropic pharmacological effects of black cumin, and its main bioactive component thymoquinone (TQ), have been manifested by their ability to attenuate oxidative stress and inflammation, and to promote immunity, cell survival, and energy metabolism, which underlie diverse health benefits, including protection against metabolic, cardiovascular, digestive, hepatic, renal, respiratory, reproductive, and neurological disorders, cancer, and so on. Furthermore, black cumin acts as an antidote, mitigating various toxicities and drug-induced side effects. Despite significant advances in pharmacological benefits, this miracle herb and its active components are still far from their clinical application. This review begins with highlighting the research trends in black cumin and revisiting phytochemical profiles. Subsequently, pharmacological attributes and health benefits of black cumin and TQ are critically reviewed. We overview molecular pharmacology to gain insight into the underlying mechanism of health benefits. Issues related to pharmacokinetic herb-drug interactions, drug delivery, and safety are also addressed. Identifying knowledge gaps, our current effort will direct future research to advance potential applications of black cumin and TQ in health and diseases.


Subject(s)
Nigella sativa/chemistry , Plant Preparations/chemistry , Plant Preparations/pharmacology , Anti-Inflammatory Agents/pharmacokinetics , Anti-Inflammatory Agents/pharmacology , Antioxidants/pharmacokinetics , Antioxidants/pharmacology , Benzoquinones/analysis , Biological Availability , Cell Survival/drug effects , Dietary Supplements , Drug Delivery Systems , Drug-Related Side Effects and Adverse Reactions , Energy Metabolism , Functional Food , Humans , Immunomodulation/drug effects , Inflammation/therapy , Oxidative Stress/drug effects , Phytotherapy/methods , Plant Preparations/pharmacokinetics
9.
Drug Dev Res ; 81(8): 919-941, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32632960

ABSTRACT

Coronavirus disease-19 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is one of the most contagious diseases in human history that has already affected millions of lives worldwide. To date, no vaccines or effective therapeutics have been discovered yet that may successfully treat COVID-19 patients or contain the transmission of the virus. Scientific communities across the globe responded rapidly and have been working relentlessly to develop drugs and vaccines, which may require considerable time. In this uncertainty, repurposing the existing antiviral drugs could be the best strategy to speed up the discovery of effective therapeutics against SARS-CoV-2. Moreover, drug repurposing may leave some vital information on druggable targets that could be capitalized in target-based drug discovery. Information on possible drug targets and the progress on therapeutic and vaccine development also needs to be updated. In this review, we revisited the druggable targets that may hold promise in the development of the anti-SARS-CoV-2 agent. Progresses on the development of potential therapeutics and vaccines that are under the preclinical studies and clinical trials have been highlighted. We anticipate that this review will provide valuable information that would help to accelerate the development of therapeutics and vaccines against SARS-CoV-2 infection.

10.
Evolution ; 74(10): 2293-2303, 2020 10.
Article in English | MEDLINE | ID: mdl-32573766

ABSTRACT

Conspicuous female coloration can evolve through male mate choice or via female-female competition thereby increasing female mating success. However, when mating is not beneficial, such as in pre-reproductive females, selection should favor cryptic rather than conspicuous coloration to avoid male detection and the associated harassment. Nevertheless, conspicuous female coloration occurs in many prereproductive animals, and its evolution remains an enigma. Here, I studied conspicuous female coloration in Agriocnemis femina damselflies, in which the conspicuous red color of the immature females changes to a less conspicuous green approximately a week after their emergence. I measured body size, weight, and egg numbers of the female morphs and found that red females are smaller and lighter and do not carry developed eggs. Finally, I calculated the occurrence frequency and mating frequency of red and green females in several populations over a three-year period. The results demonstrate that red females mated less frequently than green females even when red females were the abundant morph in the populations. I concluded that conspicuous female coloration is likely to function as a warning signal of sexual unprofitability, thereby reducing sexual harassment for females and unprofitable mating for males.


Subject(s)
Odonata/growth & development , Pigmentation , Sexual Behavior, Animal , Sexual Maturation , Animals , Female , Fertility , Genetic Fitness , Male , Vision, Ocular
11.
PLoS One ; 15(4): e0231727, 2020.
Article in English | MEDLINE | ID: mdl-32324748

ABSTRACT

Combining scientific data over a long-time period is necessary for generating large-scale datasets, which are an essential component of comparative analysis for understanding evolutionary processes. Furthermore, monitoring temporal and spatial distributions of animals at a global and regional scale is essential for studying climate change driven extinction risks. Regional and global datasets focusing on different animal groups are on the rise to meet such challenges. Although being one of the earliest and best-known insect groups, the data on Odonata remains rudimentary and dispersed, especially in the South Asian region. Bangladesh, being located within a biodiversity hotspot, possesses a large number of odonate species and many of them are endemic to the South Asian region. We have developed an online database for the Odonata of Bangladesh by compiling and digitizing data from our last four years of field studies, from previously published research articles and field guides, and also by collecting data from citizen scientists. The Odonata of Bangladesh database (accessible at http://www.odobd.org) contains phenotypic, genotypic, photographic, taxonomic, biogeographic and faunistic data of the Odonata of Bangladesh. The database will be a valuable resource for understanding diversity, distributions, extinction risks and conservation planning of the Odonata of Bangladesh. Finally, phenotypic, spatial and temporal data of Odonata of Bangladesh datasets can be integrated with other regional datasets for analyzing macroevolutionary trends and to monitor the effect of climate change on odonates.


Subject(s)
Databases, Factual , Odonata/classification , Animals , Bangladesh , Biodiversity , Climate Change , Extinction, Biological , Online Systems
12.
Nitric Oxide ; 100-101: 7-16, 2020 08 01.
Article in English | MEDLINE | ID: mdl-32283262

ABSTRACT

Being a chilling-sensitive staple crop, rice (Oryza sativa L.) is vulnerable to climate change. The competence of rice to withstand chilling stress should, therefore, be enhanced through technological tools. The present study employed chemical intervention like application of sodium nitroprusside (SNP) as nitric oxide (NO) donor and elucidated the underlying morpho-physiological and biochemical mechanisms of NO-mediated chilling tolerance in rice plants. At germination stage, germination indicators were interrupted by chilling stress (5.0 ± 1.0 °C for 8 h day-1), while pretreatment with 100 µM SNP markedly improved all the indicators. At seedling stage (14-day-old), chilling stress caused stunted growth with visible toxicity along with alteration of biochemical markers, for example, increase in oxidative stress markers (superoxide, hydrogen peroxide, and malondialdehyde) and osmolytes (total soluble sugar; proline and soluble protein content, SPC), and decrease in chlorophyll (Chl), relative water content (RWC), and antioxidants. However, NO application attenuated toxicity symptoms with improving growth attributes which might be related to enhance activities of antioxidants, mineral contents, Chl, RWC and SPC. Furthermore, principal component analysis indicated that water imbalance and increased oxidative damage were the main contributors to chilling injury, whereas NO-mediated mineral homeostasis and antioxidant defense were the critical determinants for chilling tolerance in rice. Collectively, our findings revealed that NO protects against chilling stress through valorizing cellular defense mechanisms, suggesting that exogenous application of NO could be a potential tool to evolve cold tolerance as well as climate resilience in rice.


Subject(s)
Cold-Shock Response/physiology , Crop Protection/methods , Homeostasis/drug effects , Nitric Oxide/metabolism , Oryza/drug effects , Cold Temperature , Germination/drug effects , Hydrogen Peroxide/metabolism , Lipid Peroxidation/drug effects , Malondialdehyde/metabolism , Nitric Oxide Donors/pharmacology , Nitroprusside/pharmacology , Peroxidases/metabolism , Seedlings/drug effects , Superoxides/metabolism
13.
Mol Immunol ; 61(1): 16-22, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24853589

ABSTRACT

Epitope-based vaccines permit the selection of only a specific subset of epitopes to induce the necessary immune response, thus providing a rational alternative to conventional design approaches. Using a range of immunoinformatics tools, we identified a novel, contiguous 28 amino acid multi-epitope cluster within the highly conserved secretory protein Ag85B of Mycobacterium tuberculosis, the causative agent of TB. This cluster, named Ep85B, is composed of epitopes which bind to three HLA Class I and 15 Class II molecules, and harbors the potential to generate 99% population coverage in TB-endemic regions. We experimentally evaluated the capacity of Ep85B to elicit T-cell immune responses using whole blood cells and, as predicted, observed significant increases in populations of both CD4+ and memory CD4+ CD45RO+ T-cells. Our results demonstrate the practical utility of an epitope-based design methodology - a strategy that, following further evaluation, may serve as an additional tool for the development of novel vaccine candidates against TB and other diseases.


Subject(s)
Acyltransferases/immunology , Antigens, Bacterial/immunology , Bacterial Proteins/immunology , CD4-Positive T-Lymphocytes/immunology , Computer Simulation , Epitopes, T-Lymphocyte/immunology , T-Lymphocytes/immunology , Acyltransferases/genetics , Amino Acid Sequence , Antigens, Bacterial/genetics , Bacterial Proteins/genetics , CD4-Positive T-Lymphocytes/metabolism , CD8-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/metabolism , Cell Proliferation , Cross Reactions/immunology , Epitope Mapping , Epitopes, T-Lymphocyte/genetics , HLA Antigens/immunology , HLA Antigens/metabolism , Humans , Leukocyte Common Antigens/immunology , Leukocyte Common Antigens/metabolism , Molecular Sequence Data , Mycobacterium tuberculosis/genetics , Mycobacterium tuberculosis/immunology , Mycobacterium tuberculosis/metabolism , Protein Binding/immunology , T-Lymphocytes/metabolism , Tuberculosis Vaccines/immunology
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