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1.
Sci Rep ; 14(1): 10678, 2024 05 09.
Article in English | MEDLINE | ID: mdl-38724551

ABSTRACT

Mutations in LRBA, a BEACH domain protein, cause severe immune deficiency in humans. LRBA is expressed in many tissues and organs according to biochemical analysis, but little is known about its cellular and subcellular localization, and its deficiency phenotype outside the immune system. By LacZ histochemistry of Lrba gene-trap mice, we performed a comprehensive survey of LRBA expression in numerous tissues, detecting it in many if not all epithelia, in exocrine and endocrine cells, and in subpopulations of neurons. Immunofluorescence microscopy of the exocrine and endocrine pancreas, salivary glands, and intestinal segments, confirmed these patterns of cellular expression and provided information on the subcellular localizations of the LRBA protein. Immuno-electron microscopy demonstrated that in neurons and endocrine cells, which co-express LRBA and its closest relative, neurobeachin, both proteins display partial association with endomembranes in complementary, rather than overlapping, subcellular distributions. Prominent manifestations of human LRBA deficiency, such as inflammatory bowel disease or endocrinopathies, are believed to be primarily due to immune dysregulation. However, as essentially all affected tissues also express LRBA, it is possible that LRBA deficiency enhances their vulnerability and contributes to the pathogenesis.


Subject(s)
Endocrine Glands , Epithelium , Exocrine Glands , Immunologic Deficiency Syndromes , Neurons , Animals , Humans , Mice , Endocrine Glands/metabolism , Epithelium/metabolism , Exocrine Glands/metabolism , Immunologic Deficiency Syndromes/genetics , Immunologic Deficiency Syndromes/metabolism , Immunologic Deficiency Syndromes/pathology , Mutation , Neurons/metabolism
2.
Nat Commun ; 15(1): 2496, 2024 Mar 28.
Article in English | MEDLINE | ID: mdl-38548776

ABSTRACT

Postsynaptic proteins play crucial roles in synaptic function and plasticity. During brain development, alterations in synaptic number, shape, and stability occur, known as synapse maturation. However, the postsynaptic protein composition changes during development are not fully understood. Here, we show the trajectory of the postsynaptic proteome in developing male mice and common marmosets. Proteomic analysis of mice at 2, 3, 6, and 12 weeks of age shows that proteins involved in synaptogenesis are differentially expressed during this period. Analysis of published transcriptome datasets shows that the changes in postsynaptic protein composition in the mouse brain after 2 weeks of age correlate with gene expression changes. Proteomic analysis of marmosets at 0, 2, 3, 6, and 24 months of age show that the changes in the marmoset brain can be categorized into two parts: the first 2 months and after that. The changes observed in the first 2 months are similar to those in the mouse brain between 2 and 12 weeks of age. The changes observed in marmoset after 2 months old include differential expression of synaptogenesis-related molecules, which hardly overlap with that in mice. Our results provide a comprehensive proteomic resource that underlies developmental synapse maturation in rodents and primates.


Subject(s)
Biological Phenomena , Callithrix , Animals , Mice , Male , Proteome/metabolism , Proteomics , Synapses/metabolism
3.
Circulation ; 144(20): 1629-1645, 2021 11 16.
Article in English | MEDLINE | ID: mdl-34636652

ABSTRACT

BACKGROUND: PALMD (palmdelphin) belongs to the family of paralemmin proteins implicated in cytoskeletal regulation. Single nucleotide polymorphisms in the PALMD locus that result in reduced expression are strong risk factors for development of calcific aortic valve stenosis and predict severity of the disease. METHODS: Immunodetection and public database screening showed dominant expression of PALMD in endothelial cells (ECs) in brain and cardiovascular tissues including aortic valves. Mass spectrometry, coimmunoprecipitation, and immunofluorescent staining allowed identification of PALMD partners. The consequence of loss of PALMD expression was assessed in small interferring RNA-treated EC cultures, knockout mice, and human valve samples. RNA sequencing of ECs and transcript arrays on valve samples from an aortic valve study cohort including patients with the single nucleotide polymorphism rs7543130 informed about gene regulatory changes. RESULTS: ECs express the cytosolic PALMD-KKVI splice variant, which associated with RANGAP1 (RAN GTP hydrolyase activating protein 1). RANGAP1 regulates the activity of the GTPase RAN and thereby nucleocytoplasmic shuttling via XPO1 (Exportin1). Reduced PALMD expression resulted in subcellular relocalization of RANGAP1 and XPO1, and nuclear arrest of the XPO1 cargoes p53 and p21. This indicates an important role for PALMD in nucleocytoplasmic transport and consequently in gene regulation because of the effect on localization of transcriptional regulators. Changes in EC responsiveness on loss of PALMD expression included failure to form a perinuclear actin cap when exposed to flow, indicating lack of protection against mechanical stress. Loss of the actin cap correlated with misalignment of the nuclear long axis relative to the cell body, observed in PALMD-deficient ECs, Palmd-/- mouse aorta, and human aortic valve samples derived from patients with calcific aortic valve stenosis. In agreement with these changes in EC behavior, gene ontology analysis showed enrichment of nuclear- and cytoskeleton-related terms in PALMD-silenced ECs. CONCLUSIONS: We identify RANGAP1 as a PALMD partner in ECs. Disrupting the PALMD/RANGAP1 complex alters the subcellular localization of RANGAP1 and XPO1, and leads to nuclear arrest of the XPO1 cargoes p53 and p21, accompanied by gene regulatory changes and loss of actin-dependent nuclear resilience. Combined, these consequences of reduced PALMD expression provide a mechanistic underpinning for PALMD's contribution to calcific aortic valve stenosis pathology.


Subject(s)
Cell Nucleus/genetics , Cell Nucleus/metabolism , Endothelial Cells/metabolism , Endothelium/metabolism , Membrane Proteins/genetics , Stress, Mechanical , Aged , Animals , Cell Communication/genetics , Cell Line , Cell Movement/genetics , Cells, Cultured , Computational Biology/methods , Databases, Genetic , Female , Gene Expression , Gene Expression Profiling , Gene Knockdown Techniques , Gene Ontology , Humans , Immunohistochemistry , Male , Membrane Proteins/metabolism , Mice , Mice, Knockout , Middle Aged , Protein Transport
4.
Cell Stem Cell ; 24(4): 535-550.e9, 2019 04 04.
Article in English | MEDLINE | ID: mdl-30905618

ABSTRACT

The evolutionary expansion of the mammalian neocortex (Ncx) is thought to be linked to increased proliferative capacity of basal progenitors (BPs) and their neurogenic capacity. Here, by quantifying BP morphology in the developing Ncx of mouse, ferret, and human, we show that increased BP proliferative capacity is linked to an increase in BP process number. We identify human membrane-bound PALMDELPHIN (PALMD-Caax) as an underlying factor, and we show that it drives BP process growth and proliferation when expressed in developing mouse and ferret Ncx. Conversely, CRISPR/Cas9-mediated disruption of PALMD or its binding partner ADDUCIN-γ in fetal human Ncx reduces BP process numbers and proliferation. We further show that PALMD-induced processes enable BPs to receive pro-proliferative integrin-dependent signals. These findings provide a link between BP morphology and proliferation, suggesting that changes in BP morphology may have contributed to the evolutionary expansion of the Ncx.


Subject(s)
Neocortex/anatomy & histology , Neocortex/cytology , Neural Stem Cells/cytology , Neurons/cytology , Animals , Cell Proliferation , Cells, Cultured , Ferrets , Humans , Integrins/metabolism , Mice , Mice, Inbred C57BL , Neocortex/metabolism , Neural Stem Cells/metabolism , Neurons/metabolism , Signal Transduction
5.
Article in English | MEDLINE | ID: mdl-30158865

ABSTRACT

Spines are small protrusions from dendrites where most excitatory synapses reside. Changes in number, shape, and size of dendritic spines often reflect changes of neural activity in entire circuits or at individual synapses, making spines key structures of synaptic plasticity. Neurobeachin is a multidomain protein with roles in spine formation, postsynaptic neurotransmitter receptor targeting and actin distribution. However, the contributions of individual domains of Neurobeachin to these functions is poorly understood. Here, we used mostly live cell imaging and patch-clamp electrophysiology to monitor morphology and function of spinous synapses in primary hippocampal neurons. We demonstrate that a recombinant full-length Neurobeachin from humans can restore mushroom spine density and excitatory postsynaptic currents in neurons of Neurobeachin-deficient mice. We then probed the role of individual domains of Neurobeachin by comparing them to the full-length molecule in rescue experiments of knockout neurons. We show that the combined PH-BEACH domain complex is highly localized in spine heads, and that it is sufficient to restore normal spine density and surface targeting of postsynaptic AMPA receptors. In addition, we report that the Armadillo domain facilitates the formation of filopodia, long dendritic protrusions which often precede the development of mature spines, whereas the PKA-binding site appears as a negative regulator of filopodial extension. Thus, our results indicate that individual domains of Neurobeachin sustain important and specific roles in the regulation of spinous synapses. Since heterozygous mutations in Neurobeachin occur in autistic patients, the results will also improve our understanding of pathomechanism in neuropsychiatric disorders associated with impairments of spine function.

6.
Cell Rep ; 23(9): 2705-2717, 2018 05 29.
Article in English | MEDLINE | ID: mdl-29847800

ABSTRACT

Autism spectrum disorders (ASDs) are associated with mutations affecting synaptic components, including GluN2B-NMDA receptors (NMDARs) and neurobeachin (NBEA). NBEA participates in biosynthetic pathways to regulate synapse receptor targeting, synaptic function, cognition, and social behavior. However, the role of NBEA-mediated transport in specific trafficking routes is unclear. Here, we highlight an additional function for NBEA in the local delivery and surface re-insertion of synaptic receptors in mouse neurons. NBEA dynamically interacts with Rab4-positive recycling endosomes, transiently enters spines in an activity-dependent manner, and regulates GluN2B-NMDAR recycling. Furthermore, we show that the microtubule growth inhibitor kinesin KIF21B constrains NBEA dynamics and is present in the NBEA-recycling endosome-NMDAR complex. Notably, Kif21b knockout decreases NMDAR surface expression and alters social behavior in mice, consistent with reported social deficits in Nbea mutants. The influence of NBEA-KIF21B interactions on GluN2B-NMDAR local recycling may be relevant to mechanisms underlying ASD etiology.


Subject(s)
Behavior, Animal , Carrier Proteins/metabolism , Endocytosis , Kinesins/metabolism , Nerve Tissue Proteins/metabolism , Receptors, N-Methyl-D-Aspartate/metabolism , Social Behavior , Animals , COS Cells , Chlorocebus aethiops , Cognition , Dendritic Spines/drug effects , Dendritic Spines/metabolism , Dyneins/metabolism , Endocytosis/drug effects , Endosomes/metabolism , Glutamic Acid/pharmacology , Golgi Apparatus/drug effects , Golgi Apparatus/metabolism , Membrane Proteins , Mice, Knockout , Microtubules/drug effects , Microtubules/metabolism , Nocodazole/pharmacology , Protein Binding/drug effects , Protein Transport/drug effects , Synaptic Vesicles/drug effects , Synaptic Vesicles/metabolism , rab4 GTP-Binding Proteins/metabolism
7.
J Neurol ; 265(2): 394-401, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29260357

ABSTRACT

A subset of patients with polyglucosan body myopathy was found to have underlying mutations in the RBCK1 gene. Affected patients may display diverse symptoms ranging from skeletal muscular weakness, cardiomyopathy to chronic autoinflammation and immunodeficiency. It was suggested that the exact localization of the mutation within the gene might be responsible for the specific phenotype, with N-terminal mutations causing severe immunological dysfunction and mutations in the middle or C-terminal part leading to a myopathy phenotype. We report the clinical, immunological and genetic findings of two unrelated individuals suffering from a childhood-onset RBCK1-asscociated disease caused by the same homozygous truncating mutation (NM_031229.2:c.896_899del, p.Glu299Valfs*46) in the middle part of the RBCK1 gene. Our patients suffered from a myopathy with cardiac involvement, but in contrast to previous reports on mutations in this part of the gene, also displayed signs of autoinflammation and immunodeficiency. Our report suggests that RBCK1 mutations at locations that were previously thought to lack immunological features may also present with immunological dysfunction later in the disease course. This notably broadens the genotype-phenotype correlation of RBCK1-related polyglucosan body myopathy.


Subject(s)
Glucans/metabolism , Immune System Diseases/etiology , Muscular Diseases , Mutation/genetics , Transcription Factors/genetics , Ubiquitin-Protein Ligases/genetics , Adolescent , Adult , Antibodies, Antineutrophil Cytoplasmic/metabolism , Antibodies, Antinuclear/metabolism , Arteries/pathology , Creatine Kinase/blood , Family Health , Female , Genetic Association Studies , Humans , Liver/pathology , Male , Muscle, Skeletal/pathology , Muscular Diseases/complications , Muscular Diseases/genetics , Muscular Diseases/metabolism , Peripheral Nerves/pathology , Young Adult
8.
EMBO Rep ; 18(11): 2015-2029, 2017 11.
Article in English | MEDLINE | ID: mdl-28893864

ABSTRACT

Lipopolysaccharide-responsive beige-like anchor protein (LRBA) belongs to the enigmatic class of BEACH domain-containing proteins, which have been attributed various cellular functions, typically involving intracellular protein and membrane transport processes. Here, we show that LRBA deficiency in mice leads to progressive sensorineural hearing loss. In LRBA knockout mice, inner and outer hair cell stereociliary bundles initially develop normally, but then partially degenerate during the second postnatal week. LRBA deficiency is associated with a reduced abundance of radixin and Nherf2, two adaptor proteins, which are important for the mechanical stability of the basal taper region of stereocilia. Our data suggest that due to the loss of structural integrity of the central parts of the hair bundle, the hair cell receptor potential is reduced, resulting in a loss of cochlear sensitivity and functional loss of the fraction of spiral ganglion neurons with low spontaneous firing rates. Clinical data obtained from two human patients with protein-truncating nonsense or frameshift mutations suggest that LRBA deficiency may likewise cause syndromic sensorineural hearing impairment in humans, albeit less severe than in our mouse model.


Subject(s)
Adaptor Proteins, Signal Transducing/genetics , Cytoskeletal Proteins/genetics , Hair Cells, Auditory/metabolism , Hearing Loss, Sensorineural/genetics , Membrane Proteins/genetics , Phosphoproteins/genetics , Sodium-Hydrogen Exchangers/genetics , Stereocilia/metabolism , Adaptor Proteins, Signal Transducing/deficiency , Adult , Animals , Cytoskeletal Proteins/metabolism , Evoked Potentials, Auditory, Brain Stem/physiology , Female , Gene Expression Regulation, Developmental , Hair Cells, Auditory/pathology , Hearing/physiology , Hearing Loss, Sensorineural/metabolism , Hearing Loss, Sensorineural/pathology , Humans , Male , Membrane Proteins/metabolism , Mice , Mice, Inbred C57BL , Mice, Knockout , Mutation , Phosphoproteins/metabolism , Protein Domains , Signal Transduction , Sodium-Hydrogen Exchangers/metabolism , Spiral Ganglion/metabolism , Spiral Ganglion/pathology , Stereocilia/pathology
9.
Sci Rep ; 7(1): 8409, 2017 08 16.
Article in English | MEDLINE | ID: mdl-28814779

ABSTRACT

BEACH domain proteins are involved in membrane protein traffic and human diseases, but their molecular mechanisms are not understood. The BEACH protein LRBA has been implicated in immune response and cell proliferation, and human LRBA mutations cause severe immune deficiency. Here, we report a first functional and molecular phenotype outside the immune system of LRBA-knockout mice: compromised olfaction, manifesting in reduced electro-olfactogram response amplitude, impaired food-finding efficiency, and smaller olfactory bulbs. LRBA is prominently expressed in olfactory and vomeronasal chemosensory neurons of wild-type mice. Olfactory impairment in the LRBA-KO is explained by markedly reduced concentrations (20-40% of wild-type levels) of all three subunits αolf, ß1 and γ13 of the olfactory heterotrimeric G-protein, Golf, in the sensory cilia of olfactory neurons. In contrast, cilia morphology and the concentrations of many other proteins of olfactory cilia are not or only slightly affected. LRBA is also highly expressed in photoreceptor cells, another cell type with a specialized sensory cilium and heterotrimeric G-protein-based signalling; however, visual function appeared unimpaired by the LRBA-KO. To our knowledge, this is the first observation that a BEACH protein is required for the efficient subcellular localization of a lipid-anchored protein, and of a ciliary protein.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Cilia/metabolism , GTP-Binding Protein alpha Subunits/metabolism , Adaptor Proteins, Signal Transducing/genetics , Animals , Electroretinography , Female , Gene Expression Regulation , Golgi Apparatus/drug effects , Golgi Apparatus/metabolism , Male , Mice, Knockout , Mice, Transgenic , Olfaction Disorders/genetics , Olfactory Bulb/metabolism , Olfactory Bulb/pathology , Olfactory Receptor Neurons/metabolism , Protein Domains , Retina/abnormalities , Vomeronasal Organ/cytology , Vomeronasal Organ/metabolism
10.
J Inherit Metab Dis ; 38(3): 483-7, 2015 May.
Article in English | MEDLINE | ID: mdl-25376534

ABSTRACT

Glycogen is the storage form of glucose in animal cells. Its degradation can rapidly provide fuel for energy production (particularly important in muscle), or replenish blood glucose during fasting by the liver. Genetic defects of glycogen metabolism give rise to glycogen storage diseases (GSDs), manifesting histologically in abnormal quantity or quality of glycogen in the cells. GSDs can be caused by defects of proteins participating in the synthesis or degradation of glycogen itself, in the glycolytic degradation of glucose phosphates in muscle and erythrocytes, in the release of glucose from liver and kidney into the bloodstream, in the clearance of glycogen from lysosomes (all, "primary GSDs"), or in the control of these pathways ("secondary GSDs"). Most genes responsible for classical, primary GSDs have probably been identified, and future progress in understanding the biochemical and genetic defects underlying unsolved disorders presenting with glycogen storage abnormalities will perhaps be predominantly in the field of secondary GSDs.


Subject(s)
Glycogen Storage Disease/genetics , Glycogen/genetics , Glycolysis/genetics , Muscles/pathology , Animals , Genetics, Medical , Humans
11.
J Biol Chem ; 289(20): 13912-25, 2014 May 16.
Article in English | MEDLINE | ID: mdl-24719316

ABSTRACT

Loss of Ostm1 leads to the most severe form of osteopetrosis in mice and humans. Because functional rescue of the osteopetrotic defect in these mice extended their lifespan from ∼3 weeks to 6 weeks, this unraveled a second essential role of Ostm1. We discovered that Ostm1 is highly expressed in the mouse brain in neurons, microglia, and astrocytes. At 3-4 weeks of age, mice with Ostm1 loss showed 3-10-fold stimulation of reactive gliosis, with an increased astrocyte cell population and microglia activation. This inflammatory response was associated with marked retinal photoreceptor degeneration and massive neuronal loss in the brain. Intracellular characterization of neurons revealed abnormal storage of carbohydrates, lipids, and ubiquitinated proteins, combined with marked accumulation of autophagosomes that causes frequent axonal swelling. Stimulation of autophagy was provided by specific markers and by significant down-regulation of the mammalian target of rapamycin signaling, identifying a cellular pathologic mechanism. A series of transgenic mouse lines specifically targeted to distinct central nervous system cell subpopulations determined that Ostm1 has a primary and autonomous role in neuronal homeostasis. Complete functional complementation demonstrated that the development of severe and rapid neurodegeneration in these mice is independent of the hematopoietic lineage and has clinical implications for treatment of osteopetrosis. Importantly, this study establishes a novel neurodegenerative mouse model critical for understanding the multistep pathogenic cascade of cellular autophagy disorders toward therapeutic strategy design.


Subject(s)
Autophagy , Membrane Proteins/deficiency , Neurodegenerative Diseases/metabolism , Neurodegenerative Diseases/pathology , Ubiquitin-Protein Ligases/deficiency , Animals , Astrocytes/metabolism , Astrocytes/pathology , Hematopoiesis , Homeostasis , Humans , Membrane Proteins/genetics , Mice , Mice, Transgenic , Microglia/metabolism , Microglia/pathology , Neurodegenerative Diseases/genetics , Neurons/metabolism , Neurons/pathology , Proto-Oncogene Proteins/genetics , Trans-Activators/genetics , Ubiquitin-Protein Ligases/genetics
12.
Angiogenesis ; 16(4): 795-807, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23709172

ABSTRACT

The lymphatic system, the network of lymphatic vessels and lymphoid organs, maintains the body fluid balance and ensures the immunological surveillance of the body. In the adult organism, the de novo formation of lymphatic vessels is mainly observed in pathological conditions. In contrast to the molecular mechanisms governing the generation of the lymphatic vasculature during embryogenesis, the processes underlying pathological lymphangiogenesis are less well understood. A genome-wide screen comparing the transcriptome of tumor-derived lymphatic endothelial cells with that of blood vessel endothelial cells identified paralemmin-1 as a protein prominently expressed in lymphatic endothelial cells. Paralemmin-1 is a lipid-anchored membrane protein that in fibroblasts and neurons plays a role in the regulation of cell shape, plasma membrane dynamics and cell motility. Here, we show that paralemmin-1 is expressed in tumor-derived lymphatic endothelial cells as well as in lymphatic endothelial cells of normal, non-tumorigenic tissue. Paralemmin-1 represses cell migration and delays the formation of tube-like structures of lymphatic endothelial cells in vitro by modulating cell-substrate adhesion, filopodia formation and plasma membrane blebbing. While constitutive genetic ablation of paralemmin-1 expression in mice has no effect on the development and physiological function of the lymphatic system, the loss of paralemmin-1 impaired tumor-associated lymphangiogenesis. Together, these results newly identify paralemmin-1 as a protein highly expressed in lymphatic endothelial cells. Similar to its function in neurons, it may link the cytoskeleton to the plasma membrane and thereby modulate lymphatic endothelial cell adhesion, migration and lymphangiogenesis.


Subject(s)
Endothelial Cells/metabolism , Insulinoma/pathology , Lymphangiogenesis/physiology , Lymphatic Vessels/cytology , Membrane Proteins/physiology , Pancreatic Neoplasms/pathology , Phosphoproteins/physiology , Actin Cytoskeleton/ultrastructure , Animals , Cell Adhesion , Cell Movement , Cell Surface Extensions/ultrastructure , Gene Expression Profiling , Gene Expression Regulation, Neoplastic , Insulinoma/metabolism , Insulinoma/secondary , Islets of Langerhans/metabolism , Lymphatic Metastasis , Lymphatic Vessels/pathology , Membrane Proteins/antagonists & inhibitors , Membrane Proteins/biosynthesis , Membrane Proteins/deficiency , Membrane Proteins/genetics , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, Transgenic , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Pancreatic Neoplasms/metabolism , Phosphoproteins/antagonists & inhibitors , Phosphoproteins/biosynthesis , Phosphoproteins/deficiency , Phosphoproteins/genetics , RNA Interference , RNA, Small Interfering/pharmacology , Vascular Endothelial Growth Factor C/metabolism
13.
J Cell Biol ; 200(1): 61-80, 2013 Jan 07.
Article in English | MEDLINE | ID: mdl-23277425

ABSTRACT

The surface density of neurotransmitter receptors at synapses is a key determinant of synaptic efficacy. Synaptic receptor accumulation is regulated by the transport, postsynaptic anchoring, and turnover of receptors, involving multiple trafficking, sorting, motor, and scaffold proteins. We found that neurons lacking the BEACH (beige-Chediak/Higashi) domain protein Neurobeachin (Nbea) had strongly reduced synaptic responses caused by a reduction in surface levels of glutamate and GABA(A) receptors. In the absence of Nbea, immature AMPA receptors accumulated early in the biosynthetic pathway, and mature N-methyl-d-aspartate, kainate, and GABA(A) receptors did not reach the synapse, whereas maturation and surface expression of other membrane proteins, synapse formation, and presynaptic function were unaffected. These data show that Nbea regulates synaptic transmission under basal conditions by targeting neurotransmitter receptors to synapses.


Subject(s)
Carrier Proteins/metabolism , Nerve Tissue Proteins/metabolism , Receptors, GABA-A/metabolism , Receptors, Kainic Acid/metabolism , Receptors, N-Methyl-D-Aspartate/metabolism , Synapses/metabolism , Synaptic Transmission/physiology , Animals , Carrier Proteins/genetics , Membrane Proteins , Mice , Mice, Knockout , Nerve Tissue Proteins/genetics , Protein Transport/physiology , Receptors, GABA-A/genetics , Receptors, Kainic Acid/genetics , Receptors, N-Methyl-D-Aspartate/genetics , Synapses/genetics
14.
PLoS One ; 7(7): e41850, 2012.
Article in English | MEDLINE | ID: mdl-22855693

ABSTRACT

Paralemmin-1 is a protein implicated in plasma membrane dynamics, the development of filopodia, neurites and dendritic spines, as well as the invasiveness and metastatic potential of cancer cells. However, little is known about its mode of action, or about the biological functions of the other paralemmin isoforms: paralemmin-2, paralemmin-3 and palmdelphin. We describe here evolutionary analyses of the paralemmin gene family in a broad range of vertebrate species. Our results suggest that the four paralemmin isoform genes (PALM1, PALM2, PALM3 and PALMD) arose by quadruplication of an ancestral gene in the two early vertebrate genome duplications. Paralemmin-1 and palmdelphin were further duplicated in the teleost fish specific genome duplication. We identified a unique sequence motif common to all paralemmins, consisting of 11 highly conserved residues of which four are invariant. A single full-length paralemmin homolog with this motif was identified in the genome of the sea lamprey Petromyzon marinus and an isolated putative paralemmin motif could be detected in the genome of the lancelet Branchiostoma floridae. This allows us to conclude that the paralemmin gene family arose early and has been maintained throughout vertebrate evolution, suggesting functional diversification and specific biological roles of the paralemmin isoforms. The paralemmin genes have also maintained specific features of gene organisation and sequence. This includes the occurrence of closely linked downstream genes, initially identified as a readthrough fusion protein with mammalian paralemmin-2 (Palm2-AKAP2). We have found evidence for such an arrangement for paralemmin-1 and -2 in several vertebrate genomes, as well as for palmdelphin and paralemmin-3 in teleost fish genomes, and suggest the name paralemmin downstream genes (PDG) for this new gene family. Thus, our findings point to ancient roles for paralemmins and distinct biological functions of the gene duplicates.


Subject(s)
Evolution, Molecular , Membrane Proteins/metabolism , Phosphoproteins/metabolism , Animals , Genes, Duplicate/genetics , Membrane Proteins/classification , Membrane Proteins/genetics , Phosphoproteins/classification , Phosphoproteins/genetics , Vertebrates
15.
Cancer Cell Int ; 12(1): 17, 2012 May 10.
Article in English | MEDLINE | ID: mdl-22574838

ABSTRACT

BACKGROUND: Paralemmin-1 is a phosphoprotein lipid-anchored to the cytoplasmic face of membranes where it functions in membrane dynamics, maintenance of cell shape, and process formation. Expression of paralemmin-1 and its major splice variant (Δ exon 8) as well as the extent of posttranslational modifications are tissue- and development-specific. Paralemmin-1 expression in normal breast and breast cancer tissue has not been described previously. RESULTS: Paralemmin-1 mRNA and protein expression was evaluated in ten breast cell lines, 26 primary tumors, and 10 reduction mammoplasty (RM) tissues using real time RT-PCR. Paralemmin-1 splice variants were assessed in tumor and RM tissues using a series of primers and RT-PCR. Paralemmin-1 protein expression was examined in cell lines using Western Blots and in 31 ductal carcinomas in situ, 65 infiltrating ductal carcinomas, and 40 RM tissues using immunohistochemistry. Paralemmin-1 mRNA levels were higher in breast cancers than in RM tissue and estrogen receptor (ER)-positive tumors had higher transcript levels than ER-negative tumors. The Δ exon 8 splice variant was detected more frequently in tumor than in RM tissues. Protein expression was consistent with mRNA results showing higher paralemmin-1 expression in ER-positive tumors. CONCLUSIONS: The differential expression of paralemmin-1 in a subset of breast cancers suggests the existence of variation in membrane dynamics that may be exploited to improve diagnosis or provide a therapeutic target.

16.
PLoS Genet ; 8(3): e1002568, 2012.
Article in English | MEDLINE | ID: mdl-22438821

ABSTRACT

Neurobeachin (Nbea) regulates neuronal membrane protein trafficking and is required for the development and functioning of central and neuromuscular synapses. In homozygous knockout (KO) mice, Nbea deficiency causes perinatal death. Here, we report that heterozygous KO mice haploinsufficient for Nbea have higher body weight due to increased adipose tissue mass. In several feeding paradigms, heterozygous KO mice consumed more food than wild-type (WT) controls, and this consumption was primarily driven by calories rather than palatability. Expression analysis of feeding-related genes in the hypothalamus and brainstem with real-time PCR showed differential expression of a subset of neuropeptide or neuropeptide receptor mRNAs between WT and Nbea+/- mice in the sated state and in response to food deprivation, but not to feeding reward. In humans, we identified two intronic NBEA single-nucleotide polymorphisms (SNPs) that are significantly associated with body-mass index (BMI) in adult and juvenile cohorts. Overall, data obtained in mice and humans suggest that variation of Nbea abundance or activity critically affects body weight, presumably by influencing the activity of feeding-related neural circuits. Our study emphasizes the importance of neural mechanisms in body weight control and points out NBEA as a potential risk gene in human obesity.


Subject(s)
Body Mass Index , Carrier Proteins/genetics , Carrier Proteins/metabolism , Feeding Behavior , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Obesity/genetics , Adipose Tissue/metabolism , Adolescent , Animals , Brain Stem/metabolism , Child , Food Deprivation , Gene Expression Regulation/genetics , Genetic Association Studies , Humans , Hypothalamus/metabolism , Male , Membrane Proteins , Mice , Mice, Inbred C57BL , Mice, Knockout , Middle Aged , Polymorphism, Single Nucleotide
17.
Nat Commun ; 2: 557, 2011 Nov 22.
Article in English | MEDLINE | ID: mdl-22109531

ABSTRACT

A challenge in neuroscience is to understand the mechanisms underlying synapse formation. Most excitatory synapses in the brain are built on spines, which are actin-rich protrusions from dendrites. Spines are a major substrate of brain plasticity, and spine pathologies are observed in various mental illnesses. Here we investigate the role of neurobeachin (Nbea), a multidomain protein previously linked to cases of autism, in synaptogenesis. We show that deletion of Nbea leads to reduced numbers of spinous synapses in cultured neurons from complete knockouts and in cortical tissue from heterozygous mice, accompanied by altered miniature postsynaptic currents. In addition, excitatory synapses terminate mostly at dendritic shafts instead of spine heads in Nbea mutants, and actin becomes less enriched synaptically. As actin and synaptopodin, a spine-associated protein with actin-bundling activity, accumulate ectopically near the Golgi apparatus of mutant neurons, a role emerges for Nbea in trafficking important cargo to pre- and postsynaptic compartments.


Subject(s)
Carrier Proteins/metabolism , Dendritic Spines/metabolism , Nerve Tissue Proteins/metabolism , Neurons/cytology , Neurons/metabolism , Actins/genetics , Actins/metabolism , Animals , Brain/cytology , Brain/metabolism , Carrier Proteins/genetics , Cells, Cultured , Electrophysiology , Immunohistochemistry , Membrane Proteins , Mice , Microfilament Proteins/genetics , Microfilament Proteins/metabolism , Microscopy, Electron , Nerve Tissue Proteins/genetics , Synapses/metabolism
18.
Biochem Biophys Res Commun ; 412(3): 435-40, 2011 Sep 02.
Article in English | MEDLINE | ID: mdl-21821005

ABSTRACT

Inhibitory glycine receptors (GlyRs) are densely packed in the postsynaptic membrane due to a high-affinity interaction of their ß-subunits with the scaffolding protein gephyrin. Here, we used an affinity-based proteomic approach to identify the trafficking proteins Vacuolar Protein Sorting 35 (Vps35) and Neurobeachin (Nbea) as novel GlyR ß-subunit (GlyRß) interacting proteins in rat brain. Recombinant Vps35 and a central fragment of Nbea bound to the large intracellular loop of GlyRß in glutathione-S-transferase pull-downs; in addition, Vps35 displayed binding to gephyrin. Immunocytochemical staining of spinal cord sections revealed Nbea immunoreactivity apposed to and colocalizing with marker proteins of inhibitory synapses. Our data are consistent with roles of Vps35 and Nbea in the retrieval and post-Golgi trafficking of synaptic GlyRs and possibly other neurotransmitter receptors.


Subject(s)
Brain/metabolism , Receptors, Glycine/metabolism , Vesicular Transport Proteins/metabolism , Animals , Carrier Proteins/metabolism , Cell Line , Golgi Apparatus/metabolism , Humans , Membrane Proteins/metabolism , Protein Transport , Proteomics/methods , Rats , Receptors, Glycine/genetics , Spinal Cord , Synapses/metabolism , Vesicular Transport Proteins/genetics
19.
Proc Natl Acad Sci U S A ; 108(31): E392-401, 2011 Aug 02.
Article in English | MEDLINE | ID: mdl-21712437

ABSTRACT

The protein machinery of neurotransmitter exocytosis requires efficient orchestration in space and time, for speed and precision of neurotransmission and also for synaptic ontogeny and plasticity. However, its spatial organization in situ is virtually unknown. Aczonin/Piccolo is a putative organizer protein of mammalian active zones. We determined by immunogold electron microscopy (EM) (i) the spatial arrangement (i.e., topology) of 11 segments of the Aczonin polypeptide in situ, and correlated it to (ii) the positioning of Aczonin-interacting domains of Bassoon, CAST/ELKS, Munc13, and RIM and (iii) the ultrastructurally defined presynaptic macromolecular aggregates known as dense projections and synaptic ribbons. At conventional synapses, Aczonin assumes a compact molecular topology within a layer 35 to 80 nm parallel to the plasma membrane (PM), with a "trunk" sitting on the dense projection top and a C-terminal "arm" extending down toward the PM and sideward to the dense projection periphery. At ribbon synapses, Aczonin occupies the whole ribbon area. Bassoon colocalizes with Aczonin at conventional synapses but not at ribbon synapses. At both conventional and ribbon synapses, CAST, Munc13, and RIM are segregated from Aczonin, closer to the PM, and Aczonin is positioned such that it may control the access of neurotransmitter vesicles to the fusion site.


Subject(s)
Cytoskeletal Proteins/metabolism , Neuropeptides/metabolism , Neurotransmitter Agents/metabolism , Synapses/metabolism , Adaptor Proteins, Signal Transducing/metabolism , Animals , Binding Sites , Cell Membrane/metabolism , Cell Membrane/ultrastructure , GTP-Binding Proteins/metabolism , Immunoblotting , Microscopy, Immunoelectron , Multiprotein Complexes/metabolism , Multiprotein Complexes/ultrastructure , Nerve Tissue Proteins/metabolism , Protein Binding , Rats , Rats, Sprague-Dawley , Synapses/ultrastructure
20.
J Neurosci Res ; 88(11): 2338-49, 2010 Aug 15.
Article in English | MEDLINE | ID: mdl-20623533

ABSTRACT

During embryonic development of the peripheral nervous system (PNS), the adhesion molecule neuronal cadherin (N-cadherin) is expressed by Schwann cell precursors and associated with axonal growth cones. N-cadherin expression levels decrease as precursors differentiate into Schwann cells. In this study, we investigated the distribution of N-cadherin in the developing postnatal and adult rat peripheral nervous system. N-cadherin was found primarily in ensheathing glia throughout development, concentrated at neuron-glial or glial-glial contacts of the sciatic nerve, dorsal root ganglia (DRG), and myenteric plexi. In the sciatic nerve, N-cadherin decreases with age and progress of myelination. In adult animals, N-cadherin was found exclusively in nonmyelinating Schwann cells. The distribution of N-cadherin in developing E17 DRG primary cultures is similar to what was observed in vivo. Functional studies of N-cadherin in these cultures, using the antagonist peptide INPISGQ, show a disruption of the attachment between Schwann cells, but no interference in the initial or long-term contact between Schwann cells and axons. We suggest that N-cadherin acts primarily in the adhesion between glial cells during postnatal development. It may form adherents/junctions between nonmyelinating glia, which contribute to the stable tubular structure encapsulating thin caliber axons and thus stabilize the nerve structure as a whole.


Subject(s)
Cadherins/metabolism , Cadherins/physiology , Schwann Cells/metabolism , Schwann Cells/physiology , Aging/physiology , Animals , Blotting, Western , Cadherins/antagonists & inhibitors , Cell Adhesion/physiology , Cells, Cultured , Female , Ganglia, Spinal/cytology , Ganglia, Spinal/metabolism , Ganglia, Spinal/physiology , Image Processing, Computer-Assisted , Immunohistochemistry , Microscopy, Immunoelectron , Myenteric Plexus/cytology , Myenteric Plexus/metabolism , Neuroglia/physiology , Peripheral Nervous System/growth & development , Peripheral Nervous System/physiology , Pregnancy , Rats , Stellate Ganglion/cytology , Stellate Ganglion/physiology
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