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1.
Sci Rep ; 14(1): 9879, 2024 Apr 30.
Article in English | MEDLINE | ID: mdl-38684698

ABSTRACT

Refractive index stands as an inherent characteristic of a material, allowing non-invasive exploration of the three-dimensional (3D) interior of the material. Certain materials with different refractive indices produce a birefringence phenomenon in which incident light is split into two polarization components when it passes through the materials. Representative birefringent materials appear in calcite crystals, liquid crystals (LCs), biological tissues, silk fibers, polymer films, etc. If the internal 3D shape of these materials can be visually expressed through a non-invasive method, it can greatly contribute to the semiconductor, display industry, optical components and devices, and biomedical diagnosis. This paper introduces a novel approach employing deep learning to generate 3D birefringence images using multi-viewed holographic interference images. First, we acquired a set of multi-viewed holographic interference pattern images and a 3D volume image of birefringence directly from a polarizing DTT (dielectric tensor tomography)-based microscope system about each LC droplet sample. The proposed model was trained to generate the 3D volume images of birefringence using the two-dimensional (2D) interference pattern image set. Performance evaluations were conducted against the ground truth images obtained directly from the DTT microscopy. Visualization techniques were applied to describe the refractive index distribution in the generated 3D images of birefringence. The results show the proposed method's efficiency in generating the 3D refractive index distribution from multi-viewed holographic interference images, presenting a novel data-driven alternative to traditional methods from the DTT devices.

2.
Int J Mol Sci ; 24(21)2023 Nov 06.
Article in English | MEDLINE | ID: mdl-37959001

ABSTRACT

Cannabidiol (CBD), a major non-psychoactive component of the cannabis plant, has shown therapeutic potential in Alzheimer's disease (AD). In this study, we identified potential CBD targets associated with AD using a drug-target binding affinity prediction model and generated CBD analogs using a genetic algorithm combined with a molecular docking system. As a result, we identified six targets associated with AD: Endothelial NOS (ENOS), Myeloperoxidase (MPO), Apolipoprotein E (APOE), Amyloid-beta precursor protein (APP), Disintegrin and metalloproteinase domain-containing protein 10 (ADAM10), and Presenilin-1 (PSEN1). Furthermore, we generated CBD analogs for each target that optimize for all desired drug-likeness properties and physicochemical property filters, resulting in improved pIC50 values and docking scores compared to CBD. Molecular dynamics (MD) simulations were applied to analyze each target's CBD and highest-scoring CBD analogs. The MD simulations revealed that the complexes of ENOS, MPO, and ADAM10 with CBD exhibited high conformational stability, and the APP and PSEN1 complexes with CBD analogs demonstrated even higher conformational stability and lower interaction energy compared to APP and PSEN1 complexes with CBD. These findings demonstrated the capable binding of the six identified targets with CBD and the enhanced binding stability achieved with the developed CBD analogs for each target.


Subject(s)
Alzheimer Disease , Cannabidiol , Humans , Alzheimer Disease/metabolism , Cannabidiol/pharmacology , Cannabidiol/therapeutic use , Molecular Docking Simulation , Amyloid beta-Protein Precursor/metabolism , Molecular Dynamics Simulation
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