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1.
Biochem Biophys Res Commun ; 526(1): 176-183, 2020 05 21.
Article in English | MEDLINE | ID: mdl-32201075

ABSTRACT

Autophagy is an essential process to maintain cell survival and homeostasis under various stress conditions. Here, we report that lysine-specific demethylase 3A (KDM3A) plays an important role in starvation-induced autophagy. Using Kdm3a knockout mice, we demonstrate that KDM3A is crucial for proper hepatic autophagy in vivo. Hepatic mRNA expression analysis and ChIP assay in WT and Kdm3a knockout mouse livers reveal that KDM3A activates autophagy genes by reducing histone H3K9me2 levels upon fasting. Together, our finding represents previously unidentified function of KDM3A as a key regulator of autophagy, implicating potential therapeutic approaches for autophagy-related diseases.


Subject(s)
Autophagy , Jumonji Domain-Containing Histone Demethylases/metabolism , Animals , Autophagosomes/metabolism , Fasting , Fibroblasts/metabolism , Gene Expression Regulation , Hep G2 Cells , Humans , Jumonji Domain-Containing Histone Demethylases/genetics , Liver/cytology , Liver/metabolism , Lysosomes/metabolism , Male , Mice, Inbred C57BL , Mice, Knockout , RNA, Messenger/genetics , RNA, Messenger/metabolism
2.
Proc Natl Acad Sci U S A ; 115(46): 11766-11771, 2018 11 13.
Article in English | MEDLINE | ID: mdl-30377265

ABSTRACT

Janus tyrosine kinase 2 (JAK2)-signal transducer and activator of transcription 3 (STAT3) signaling pathway is essential for modulating cellular development, differentiation, and homeostasis. Thus, dysregulation of JAK2-STAT3 signaling pathway is frequently associated with human malignancies. Here, we provide evidence that lysine-specific demethylase 3A (KDM3A) functions as an essential epigenetic enzyme for the activation of JAK2-STAT3 signaling pathway. KDM3A is tyrosine-phosphorylated by JAK2 in the nucleus and functions as a STAT3-dependent transcriptional coactivator. JAK2-KDM3A signaling cascade induced by IL-6 leads to alteration of histone H3K9 methylation as a predominant epigenetic event, thereby providing the functional and mechanistic link between activation of JAK2-STAT3 signaling pathway and its epigenetic control. Together, our findings demonstrate that inhibition of KDM3A phosphorylation could be a potent therapeutic strategy to control oncogenic effect of JAK2-STAT3 signaling pathway.


Subject(s)
Jumonji Domain-Containing Histone Demethylases/metabolism , Epigenesis, Genetic , HEK293 Cells/metabolism , HeLa Cells , Histones/metabolism , Humans , Interleukin-6/metabolism , Janus Kinase 2/metabolism , Jumonji Domain-Containing Histone Demethylases/genetics , Phosphorylation , Protein-Tyrosine Kinases/metabolism , STAT3 Transcription Factor/metabolism , Signal Transduction , Transcriptional Activation
3.
Nat Commun ; 6: 6810, 2015 Apr 10.
Article in English | MEDLINE | ID: mdl-25857206

ABSTRACT

The actions of transcription factors, chromatin modifiers and noncoding RNAs are crucial for the programming of cell states. Although the importance of various epigenetic machineries for controlling pluripotency of embryonic stem (ES) cells has been previously studied, how chromatin modifiers cooperate with specific transcription factors still remains largely elusive. Here, we find that Pontin chromatin remodelling factor plays an essential role as a coactivator for Oct4 for maintenance of pluripotency in mouse ES cells. Genome-wide analyses reveal that Pontin and Oct4 share a substantial set of target genes involved in ES cell maintenance. Intriguingly, we find that the Oct4-dependent coactivator function of Pontin extends to the transcription of large intergenic noncoding RNAs (lincRNAs) and in particular linc1253, a lineage programme repressing lincRNA, is a Pontin-dependent Oct4 target lincRNA. Together, our findings demonstrate that the Oct4-Pontin module plays critical roles in the regulation of genes involved in ES cell fate determination.


Subject(s)
DNA Helicases/genetics , Epigenesis, Genetic , Mouse Embryonic Stem Cells/metabolism , Octamer Transcription Factor-3/genetics , RNA, Long Noncoding/genetics , Animals , Cell Differentiation , Chromatin/chemistry , Chromatin/metabolism , Chromatin Assembly and Disassembly , DNA Helicases/deficiency , Gene Expression Profiling , Genome-Wide Association Study , Mice , Mice, Knockout , Mouse Embryonic Stem Cells/cytology , Octamer Transcription Factor-3/deficiency , Patched Receptors , Pluripotent Stem Cells/cytology , Pluripotent Stem Cells/metabolism , RNA, Long Noncoding/metabolism , Receptors, Cell Surface/genetics , Receptors, Cell Surface/metabolism , Signal Transduction , Telomere-Binding Proteins/genetics , Telomere-Binding Proteins/metabolism , Tissue Inhibitor of Metalloproteinase-2/genetics , Tissue Inhibitor of Metalloproteinase-2/metabolism , Tropomyosin/genetics , Tropomyosin/metabolism
4.
Mol Cell ; 48(4): 572-86, 2012 Nov 30.
Article in English | MEDLINE | ID: mdl-23063525

ABSTRACT

Ubiquitination plays a major role in protein degradation. Although phosphorylation-dependent ubiquitination is well known for the regulation of protein stability, methylation-dependent ubiquitination machinery has not been characterized. Here, we provide evidence that methylation-dependent ubiquitination is carried out by damage-specific DNA binding protein 1 (DDB1)/cullin4 (CUL4) E3 ubiquitin ligase complex and a DDB1-CUL4-associated factor 1 (DCAF1) adaptor, which recognizes monomethylated substrates. Molecular modeling and binding affinity studies reveal that the putative chromo domain of DCAF1 directly recognizes monomethylated substrates, whereas critical binding pocket mutations of the DCAF1 chromo domain ablated the binding from the monomethylated substrates. Further, we discovered that enhancer of zeste homolog 2 (EZH2) methyltransferase has distinct substrate specificities for histone H3K27 and nonhistones exemplified by an orphan nuclear receptor, RORα. We propose that EZH2-DCAF1/DDB1/CUL4 represents a previously unrecognized methylation-dependent ubiquitination machinery specifically recognizing "methyl degron"; through this, nonhistone protein stability can be dynamically regulated in a methylation-dependent manner.


Subject(s)
Carrier Proteins/metabolism , Cullin Proteins/metabolism , DNA-Binding Proteins/metabolism , Polycomb Repressive Complex 2/metabolism , Ubiquitin-Protein Ligases/metabolism , Enhancer of Zeste Homolog 2 Protein , Humans , MCF-7 Cells , Methylation , Nuclear Receptor Subfamily 1, Group F, Member 1/metabolism , Protein Serine-Threonine Kinases , Substrate Specificity
5.
Fertil Steril ; 95(3): 1120.e11-4, 2011 Mar 01.
Article in English | MEDLINE | ID: mdl-20947074

ABSTRACT

OBJECTIVE: To analyze cases of ovarian leiomyomas and to discuss the proper surgical management. DESIGN: A case series and discussion. SETTING: General university hospital and healthcare center. PATIENT(S): Nine patients who were diagnosed with ovarian leiomyomas after surgery between 1993 and 2009. INTERVENTION(S): None. MAIN OUTCOME MEASURE(S): A preoperative diagnosis that was matched to the postoperative diagnosis and the type of surgery. RESULT(S): In all cases, ovarian leiomyoma was misdiagnosed preoperatively as pedunculated uterine myoma, ovarian fibroma, or even ovarian endometrioma. Seven (77.8%) of the nine patients underwent a salpingo-oophorectomy or an oophorectomy with or without hysterectomy, and only two (22.2%) patients were submitted to an ovary-preserving surgery (i.e., a cystectomy or ovarian wedge resection). CONCLUSION(S): Because of their extreme rarity, ovarian leiomyomas are seldom suspected intraoperatively or preoperatively. However, most of these tumors appear at reproductive age and have a benign nature, similar to uterine myomas. Therefore, surgeons should perform ovary-preserving management, especially in young patients.


Subject(s)
Infertility, Female/etiology , Leiomyoma/complications , Ovarian Neoplasms/complications , Adolescent , Adult , Biopsy , Female , Humans , Infertility, Female/pathology , Infertility, Female/surgery , Laparoscopy , Leiomyoma/pathology , Leiomyoma/surgery , Middle Aged , Ovarian Neoplasms/pathology , Ovarian Neoplasms/surgery , Preoperative Care , Young Adult
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